RNA–Protein interactions for RNA: ENST00000568301.1

COMMD4-223, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 666 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-223	ENST00000568301	PRELID1	Q9Y255	219 aa		10.34	□□□□□ -0.75
COMMD4-223	ENST00000568301	TRBV19	A0A075B6N1	114 aa		10.33	□□□□□ -0.76
COMMD4-223	ENST00000568301	C7orf71	A4D174	169 aa		10.33	□□□□□ -0.76
COMMD4-223	ENST00000568301	CST7	O76096	145 aa		10.33	□□□□□ -0.76
COMMD4-223	ENST00000568301	NMB	P08949	121 aa		10.33	□□□□□ -0.76
COMMD4-223	ENST00000568301	BCAP31	P51572	246 aa		10.33	□□□□□ -0.76
COMMD4-223	ENST00000568301	CAV2	P51636	162 aa		10.33	□□□□□ -0.76
COMMD4-223	ENST00000568301	ANXA2R	Q3ZCQ2	193 aa		10.33	□□□□□ -0.76
COMMD4-223	ENST00000568301		Q6ZRN7	208 aa	Predicted RBP	10.33	□□□□□ -0.76
COMMD4-223	ENST00000568301	EIF4E3	Q8N5X7	224 aa	Known RBP	10.33	□□□□□ -0.76
COMMD4-223	ENST00000568301	CHAC2	Q8WUX2	184 aa		10.33	□□□□□ -0.76
COMMD4-223	ENST00000568301	FAM19A4	Q96LR4	140 aa		10.33	□□□□□ -0.76
COMMD4-223	ENST00000568301	C20orf85	Q9H1P6	137 aa		10.33	□□□□□ -0.76
COMMD4-223	ENST00000568301	C11orf1	Q9H5F2	150 aa		10.33	□□□□□ -0.76
COMMD4-223	ENST00000568301	SLC39A9	Q9NUM3	307 aa		10.33	□□□□□ -0.76
COMMD4-223	ENST00000568301	PGPEP1	Q9NXJ5	209 aa		10.33	□□□□□ -0.76
COMMD4-223	ENST00000568301	TMEM14C	Q9P0S9	112 aa		10.33	□□□□□ -0.76
COMMD4-223	ENST00000568301	FUT9	Q9Y231	359 aa		10.33	□□□□□ -0.76
COMMD4-223	ENST00000568301		M0R3E3	92 aa		10.32	□□□□□ -0.76
COMMD4-223	ENST00000568301	SIVA1	O15304	175 aa		10.32	□□□□□ -0.76
COMMD4-223	ENST00000568301	HIST1H1E	P10412	219 aa	Known RBP	10.32	□□□□□ -0.76
COMMD4-223	ENST00000568301	LINC00315	P59091	139 aa		10.32	□□□□□ -0.76
COMMD4-223	ENST00000568301	PDE6H	Q13956	83 aa		10.32	□□□□□ -0.76
COMMD4-223	ENST00000568301	AGPAT4-IT1	Q9H0P7	198 aa		10.32	□□□□□ -0.76
COMMD4-223	ENST00000568301	LSM5	Q9Y4Y9	91 aa	Known RBP	10.32	□□□□□ -0.76
COMMD4-223	ENST00000568301	TRGV1	A0A0A0MS02	117 aa		10.31	□□□□□ -0.76
COMMD4-223	ENST00000568301	FAM24A	A6NFZ4	105 aa		10.31	□□□□□ -0.76
COMMD4-223	ENST00000568301	CCS	O14618	274 aa		10.31	□□□□□ -0.76
COMMD4-223	ENST00000568301	SPINK4	O60575	86 aa		10.31	□□□□□ -0.76
COMMD4-223	ENST00000568301	NDUFB4	O95168	129 aa		10.31	□□□□□ -0.76
COMMD4-223	ENST00000568301	INAFM2	P0DMQ5	153 aa		10.31	□□□□□ -0.76
COMMD4-223	ENST00000568301	PVALB	P20472	110 aa	Predicted RBP	10.31	□□□□□ -0.76
COMMD4-223	ENST00000568301	S100A11	P31949	105 aa		10.31	□□□□□ -0.76
COMMD4-223	ENST00000568301	CD300C	Q08708	224 aa		10.31	□□□□□ -0.76
COMMD4-223	ENST00000568301	ERCC8	Q13216	396 aa		10.31	□□□□□ -0.76
COMMD4-223	ENST00000568301	C9orf47	Q6ZRZ4	202 aa		10.31	□□□□□ -0.76
COMMD4-223	ENST00000568301	SRRM2	Q9UQ35	2752 aa	Known RBP	10.3	□□□□□ -0.76
COMMD4-223	ENST00000568301	FAM25E	A8MYX2	175 aa		10.3	□□□□□ -0.76
COMMD4-223	ENST00000568301	MPDU1	O75352	247 aa		10.3	□□□□□ -0.76
COMMD4-223	ENST00000568301	GPX1	P07203	203 aa		10.3	□□□□□ -0.76
COMMD4-223	ENST00000568301	CRISP2	P16562	243 aa		10.3	□□□□□ -0.76
COMMD4-223	ENST00000568301	RNASE4	P34096	147 aa	Known RBP	10.3	□□□□□ -0.76
COMMD4-223	ENST00000568301	FUS	P35637	526 aa	Known RBP eCLIP	10.3	□□□□□ -0.76
COMMD4-223	ENST00000568301	SULT1A1	P50225	295 aa		10.3	□□□□□ -0.76
COMMD4-223	ENST00000568301	TCL1A	P56279	114 aa		10.3	□□□□□ -0.76
COMMD4-223	ENST00000568301	SLA	Q13239	276 aa		10.3	□□□□□ -0.76
COMMD4-223	ENST00000568301	IBA57	Q5T440	356 aa	Known RBP	10.3	□□□□□ -0.76
COMMD4-223	ENST00000568301	ENKUR	Q8TC29	256 aa		10.3	□□□□□ -0.76
COMMD4-223	ENST00000568301	ST6GAL2	Q96JF0	529 aa		10.3	□□□□□ -0.76
COMMD4-223	ENST00000568301	C2orf50	Q96LR7	162 aa		10.3	□□□□□ -0.76
COMMD4-223	ENST00000568301	KLF12	Q9Y4X4	402 aa		10.3	□□□□□ -0.76
COMMD4-223	ENST00000568301	TIMM9	Q9Y5J7	89 aa		10.3	□□□□□ -0.76
COMMD4-223	ENST00000568301	C5orf51	A6NDU8	294 aa		10.29	□□□□□ -0.76
COMMD4-223	ENST00000568301	EREG	O14944	169 aa		10.29	□□□□□ -0.76
COMMD4-223	ENST00000568301	PAX4	O43316	350 aa		10.29	□□□□□ -0.76
COMMD4-223	ENST00000568301	H2AFB2	P0C5Z0	115 aa		10.29	□□□□□ -0.76
COMMD4-223	ENST00000568301	HBG1	P69891	147 aa		10.29	□□□□□ -0.76
COMMD4-223	ENST00000568301	HBG2	P69892	147 aa		10.29	□□□□□ -0.76
COMMD4-223	ENST00000568301	BAX	Q07812	192 aa		10.29	□□□□□ -0.76
COMMD4-223	ENST00000568301	BTN1A1	Q13410	526 aa		10.29	□□□□□ -0.76
COMMD4-223	ENST00000568301	ATP6V1F	Q16864	119 aa		10.29	□□□□□ -0.76
COMMD4-223	ENST00000568301	MARVELD1	Q9BSK0	173 aa		10.29	□□□□□ -0.76
COMMD4-223	ENST00000568301	LYRM2	Q9NU23	88 aa	Predicted RBP	10.29	□□□□□ -0.76
COMMD4-223	ENST00000568301	PRO0255	Q9UI72	69 aa		10.29	□□□□□ -0.76
COMMD4-223	ENST00000568301	ICOS	Q9Y6W8	199 aa		10.29	□□□□□ -0.76
COMMD4-223	ENST00000568301	UBE2L5P	A0A1B0GUS4	154 aa		10.28	□□□□□ -0.76
COMMD4-223	ENST00000568301	NXPH4	O95158	308 aa		10.28	□□□□□ -0.76
COMMD4-223	ENST00000568301	PTTG1	O95997	202 aa		10.28	□□□□□ -0.76
COMMD4-223	ENST00000568301	IL15RA	Q13261	267 aa		10.28	□□□□□ -0.76
COMMD4-223	ENST00000568301	CDPF1	Q6NVV7	123 aa		10.28	□□□□□ -0.76
COMMD4-223	ENST00000568301	STX12	Q86Y82	276 aa		10.28	□□□□□ -0.76
COMMD4-223	ENST00000568301	EXOC3-AS1	Q8N2X6	119 aa		10.28	□□□□□ -0.76
COMMD4-223	ENST00000568301	TMEM252	Q8N6L7	170 aa		10.28	□□□□□ -0.76
COMMD4-223	ENST00000568301	AAMDC	Q9H7C9	122 aa		10.28	□□□□□ -0.76
COMMD4-223	ENST00000568301	NUDT15	Q9NV35	164 aa		10.28	□□□□□ -0.76
COMMD4-223	ENST00000568301	RGS13	O14921	159 aa		10.27	□□□□□ -0.77
COMMD4-223	ENST00000568301	PRAF2	O60831	178 aa		10.27	□□□□□ -0.77
COMMD4-223	ENST00000568301	PYY	P10082	97 aa		10.27	□□□□□ -0.77
COMMD4-223	ENST00000568301	XG	P55808	180 aa		10.27	□□□□□ -0.77
COMMD4-223	ENST00000568301	ERVFC1-1	P60608	527 aa		10.27	□□□□□ -0.77
COMMD4-223	ENST00000568301	MRPL23	Q16540	153 aa	Known RBP	10.27	□□□□□ -0.77
COMMD4-223	ENST00000568301	NFE4	Q86UQ8	179 aa		10.27	□□□□□ -0.77
COMMD4-223	ENST00000568301	LYPD1	Q8N2G4	141 aa		10.27	□□□□□ -0.77
COMMD4-223	ENST00000568301	ZFAND2A	Q8N6M9	145 aa		10.27	□□□□□ -0.77
COMMD4-223	ENST00000568301	HHLA3	Q9XRX5	114 aa		10.27	□□□□□ -0.77
COMMD4-223	ENST00000568301	TRAV6	A0A075B6T7	132 aa		10.26	□□□□□ -0.77
COMMD4-223	ENST00000568301	IGHV1OR15-1	A0A075B7D0	117 aa		10.26	□□□□□ -0.77
COMMD4-223	ENST00000568301	IGSF23	A1L1A6	192 aa		10.26	□□□□□ -0.77
COMMD4-223	ENST00000568301		K7EP13	123 aa		10.26	□□□□□ -0.77
COMMD4-223	ENST00000568301	FGF7	P21781	194 aa		10.26	□□□□□ -0.77
COMMD4-223	ENST00000568301	CRYBA4	P53673	196 aa		10.26	□□□□□ -0.77
COMMD4-223	ENST00000568301	ICAM4	Q14773	271 aa		10.26	□□□□□ -0.77
COMMD4-223	ENST00000568301	TMEM78	Q5T7P6	136 aa		10.26	□□□□□ -0.77
COMMD4-223	ENST00000568301	LYPD5	Q6UWN5	251 aa		10.26	□□□□□ -0.77
COMMD4-223	ENST00000568301	BLNK	Q8WV28	456 aa		10.26	□□□□□ -0.77
COMMD4-223	ENST00000568301	VGLL1	Q99990	258 aa		10.26	□□□□□ -0.77
COMMD4-223	ENST00000568301	ZNF492	Q9P255	531 aa		10.26	□□□□□ -0.77
COMMD4-223	ENST00000568301	TP53TG3	Q9ULZ0	132 aa		10.26	□□□□□ -0.77
COMMD4-223	ENST00000568301	TRAV9-2	A0A087WT02	112 aa		10.25	□□□□□ -0.77
COMMD4-223	ENST00000568301	TRBV7-9	A0A0J9YWB2	115 aa		10.25	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms