RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 CLINT1Q14677 625 aa11.96□□□□□ -0.49
VPS9D1-203ENST00000563798 ANXA2RQ3ZCQ2 193 aa11.96□□□□□ -0.49
VPS9D1-203ENST00000563798 FAM167A-AS1Q96KT0 104 aa11.96□□□□□ -0.49
VPS9D1-203ENST00000563798 UPK3BQ9BT76 320 aa11.96□□□□□ -0.49
VPS9D1-203ENST00000563798 SLC25A2Q9BXI2 301 aa11.96□□□□□ -0.49
VPS9D1-203ENST00000563798 NMES1Q9C002 83 aa11.96□□□□□ -0.49
VPS9D1-203ENST00000563798 AGPAT4-IT1Q9H0P7 198 aa11.96□□□□□ -0.49
VPS9D1-203ENST00000563798 TIMM9Q9Y5J7 89 aa11.96□□□□□ -0.49
VPS9D1-203ENST00000563798 E5RGE8 158 aa11.95□□□□□ -0.5
VPS9D1-203ENST00000563798 J3KRW8 73 aa11.95□□□□□ -0.5
VPS9D1-203ENST00000563798 PYYP10082 97 aa11.95□□□□□ -0.5
VPS9D1-203ENST00000563798 TNP2Q05952 138 aa11.95□□□□□ -0.5
VPS9D1-203ENST00000563798 ERCC8Q13216 396 aa11.95□□□□□ -0.5
VPS9D1-203ENST00000563798 GCSAMLQ5JQS6 135 aa11.95□□□□□ -0.5
VPS9D1-203ENST00000563798 C11orf72Q8NBR9 251 aa11.95□□□□□ -0.5
VPS9D1-203ENST00000563798 ZNF680Q8NEM1 530 aa11.95□□□□□ -0.5
VPS9D1-203ENST00000563798 OR5C1Q8NGR4 320 aa11.95□□□□□ -0.5
VPS9D1-203ENST00000563798 SLC25A31Q9H0C2 315 aa11.95□□□□□ -0.5
VPS9D1-203ENST00000563798 Q9H8V8 135 aa11.95□□□□□ -0.5
VPS9D1-203ENST00000563798 Q6ZTI0 123 aa11.94□□□□□ -0.5
VPS9D1-203ENST00000563798 ZNF575Q86XF7 245 aa11.94□□□□□ -0.5
VPS9D1-203ENST00000563798 AAMDCQ9H7C9 122 aa11.94□□□□□ -0.5
VPS9D1-203ENST00000563798 H0YIZ8 118 aa11.93□□□□□ -0.5
VPS9D1-203ENST00000563798 PRAF2O60831 178 aa11.93□□□□□ -0.5
VPS9D1-203ENST00000563798 UPK1BO75841 260 aa11.93□□□□□ -0.5
VPS9D1-203ENST00000563798 NBEAP1P0C6P0 100 aa11.93□□□□□ -0.5
VPS9D1-203ENST00000563798 CYCSP99999 105 aaKnown RBP11.93□□□□□ -0.5
VPS9D1-203ENST00000563798 CD300CQ08708 224 aa11.93□□□□□ -0.5
VPS9D1-203ENST00000563798 EXOC3-AS1Q8N2X6 119 aa11.93□□□□□ -0.5
VPS9D1-203ENST00000563798 EIF4E3Q8N5X7 224 aaKnown RBP11.93□□□□□ -0.5
VPS9D1-203ENST00000563798 THAP6Q8TBB0 222 aa11.93□□□□□ -0.5
VPS9D1-203ENST00000563798 WDR61Q9GZS3 305 aaKnown RBP11.93□□□□□ -0.5
VPS9D1-203ENST00000563798 KCNIP2Q9NS61 270 aa11.93□□□□□ -0.5
VPS9D1-203ENST00000563798 OR5AC2Q9NZP5 309 aa11.93□□□□□ -0.5
VPS9D1-203ENST00000563798 TRBV7-9A0A0J9YWB2 115 aa11.92□□□□□ -0.5
VPS9D1-203ENST00000563798 BTF3P20290 206 aaKnown RBP11.92□□□□□ -0.5
VPS9D1-203ENST00000563798 ICAM4Q14773 271 aa11.92□□□□□ -0.5
VPS9D1-203ENST00000563798 ESRGQ1W209 222 aa11.92□□□□□ -0.5
VPS9D1-203ENST00000563798 TTC32Q5I0X7 151 aa11.92□□□□□ -0.5
VPS9D1-203ENST00000563798 IBA57Q5T440 356 aaKnown RBP11.92□□□□□ -0.5
VPS9D1-203ENST00000563798 MIR17HGQ75NE6 70 aa11.92□□□□□ -0.5
VPS9D1-203ENST00000563798 ZFAND2AQ8N6M9 145 aa11.92□□□□□ -0.5
VPS9D1-203ENST00000563798 ENKURQ8TC29 256 aa11.92□□□□□ -0.5
VPS9D1-203ENST00000563798 BLNKQ8WV28 456 aa11.92□□□□□ -0.5
VPS9D1-203ENST00000563798 MRPL32Q9BYC8 188 aaKnown RBP11.92□□□□□ -0.5
VPS9D1-203ENST00000563798 OR51M1Q9H341 326 aa11.92□□□□□ -0.5
VPS9D1-203ENST00000563798 TMPRSS5Q9H3S3 457 aa11.92□□□□□ -0.5
VPS9D1-203ENST00000563798 GSN-AS1Q9NRJ2 163 aa11.92□□□□□ -0.5
VPS9D1-203ENST00000563798 A0A0J9YY99 117 aa11.91□□□□□ -0.5
VPS9D1-203ENST00000563798 A0A1W2PPQ1 181 aa11.91□□□□□ -0.5
VPS9D1-203ENST00000563798 SIX6O95475 246 aa11.91□□□□□ -0.5
VPS9D1-203ENST00000563798 TCL1AP56279 114 aa11.91□□□□□ -0.5
VPS9D1-203ENST00000563798 BTN1A1Q13410 526 aa11.91□□□□□ -0.5
VPS9D1-203ENST00000563798 FXYD5Q96DB9 178 aa11.91□□□□□ -0.5
VPS9D1-203ENST00000563798 VSIG2Q96IQ7 327 aa11.91□□□□□ -0.5
VPS9D1-203ENST00000563798 Q9H3A6 140 aa11.91□□□□□ -0.5
VPS9D1-203ENST00000563798 ZNF492Q9P255 531 aa11.91□□□□□ -0.5
VPS9D1-203ENST00000563798 MRPS16Q9Y3D3 137 aaKnown RBP11.91□□□□□ -0.5
VPS9D1-203ENST00000563798 SPINK4O60575 86 aa11.9□□□□□ -0.5
VPS9D1-203ENST00000563798 GPX1P07203 203 aa11.9□□□□□ -0.5
VPS9D1-203ENST00000563798 RNASE4P34096 147 aaKnown RBP11.9□□□□□ -0.5
VPS9D1-203ENST00000563798 IFITM3Q01628 133 aa11.9□□□□□ -0.5
VPS9D1-203ENST00000563798 TMEM78Q5T7P6 136 aa11.9□□□□□ -0.5
VPS9D1-203ENST00000563798 MUC4Q99102 2169 aa11.9□□□□□ -0.5
VPS9D1-203ENST00000563798 VGLL1Q99990 258 aa11.9□□□□□ -0.5
VPS9D1-203ENST00000563798 KRTAP1-5Q9BYS1 174 aa11.9□□□□□ -0.5
VPS9D1-203ENST00000563798 FUT9Q9Y231 359 aa11.9□□□□□ -0.5
VPS9D1-203ENST00000563798 IGKV2-40A0A087WW87 121 aaPredicted RBP11.89□□□□□ -0.51
VPS9D1-203ENST00000563798 IGKV2D-40P01614 121 aaPredicted RBP11.89□□□□□ -0.51
VPS9D1-203ENST00000563798 LYPD1Q8N2G4 141 aa11.89□□□□□ -0.51
VPS9D1-203ENST00000563798 MARVELD1Q9BSK0 173 aa11.89□□□□□ -0.51
VPS9D1-203ENST00000563798 PAXXQ9BUH6 204 aa11.89□□□□□ -0.51
VPS9D1-203ENST00000563798 KLF12Q9Y4X4 402 aa11.89□□□□□ -0.51
VPS9D1-203ENST00000563798 ABCA13Q86UQ4 5058 aa11.88□□□□□ -0.51
VPS9D1-203ENST00000563798 TRGV2A0A075B6R0 118 aa11.88□□□□□ -0.51
VPS9D1-203ENST00000563798 A0A096LPF7 62 aa11.88□□□□□ -0.51
VPS9D1-203ENST00000563798 RBAKDNA6NC62 111 aa11.88□□□□□ -0.51
VPS9D1-203ENST00000563798 C17orf112F2Z3M2 114 aa11.88□□□□□ -0.51
VPS9D1-203ENST00000563798 INMT-MINDY4F8WBC2 141 aa11.88□□□□□ -0.51
VPS9D1-203ENST00000563798 CDK2AP2O75956 126 aa11.88□□□□□ -0.51
VPS9D1-203ENST00000563798 H2BFSP57053 126 aa11.88□□□□□ -0.51
VPS9D1-203ENST00000563798 LRRC37A5PQ49AS3 106 aa11.88□□□□□ -0.51
VPS9D1-203ENST00000563798 PRR9Q5T870 116 aa11.88□□□□□ -0.51
VPS9D1-203ENST00000563798 FAM122CQ6P4D5 195 aa11.88□□□□□ -0.51
VPS9D1-203ENST00000563798 LRP1BQ9NZR2 4599 aa11.87□□□□□ -0.51
VPS9D1-203ENST00000563798 IGHV1OR15-1A0A075B7D0 117 aa11.87□□□□□ -0.51
VPS9D1-203ENST00000563798 TRGV1A0A0A0MS02 117 aa11.87□□□□□ -0.51
VPS9D1-203ENST00000563798 C16orf90A8MZG2 172 aa11.87□□□□□ -0.51
VPS9D1-203ENST00000563798 ZNF138P52744 262 aa11.87□□□□□ -0.51
VPS9D1-203ENST00000563798 PPP1R1CQ8WVI7 109 aa11.87□□□□□ -0.51
VPS9D1-203ENST00000563798 ST6GAL2Q96JF0 529 aa11.87□□□□□ -0.51
VPS9D1-203ENST00000563798 A6NHS1 94 aa11.86□□□□□ -0.51
VPS9D1-203ENST00000563798 OR10J4P0C629 311 aa11.86□□□□□ -0.51
VPS9D1-203ENST00000563798 PHYHIPLQ96FC7 376 aa11.86□□□□□ -0.51
VPS9D1-203ENST00000563798 ATP5SQ99766 215 aa11.86□□□□□ -0.51
VPS9D1-203ENST00000563798 TP53TG3Q9ULZ0 132 aa11.86□□□□□ -0.51
VPS9D1-203ENST00000563798 HSPG2P98160 4391 aa11.86□□□□□ -0.51
VPS9D1-203ENST00000563798 RGS13O14921 159 aa11.85□□□□□ -0.51
VPS9D1-203ENST00000563798 ZNF266Q14584 549 aa11.85□□□□□ -0.51
VPS9D1-203ENST00000563798 Q6ZQT7 251 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms