RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 KLRD1Q13241 179 aa10.89□□□□□ -0.67
VPS9D1-202ENST00000561976 ACACAQ13085 2346 aa10.88□□□□□ -0.67
VPS9D1-202ENST00000561976 GAS8-AS1O95177 125 aa10.88□□□□□ -0.67
VPS9D1-202ENST00000561976 SMIM13P0DJ93 91 aa10.88□□□□□ -0.67
VPS9D1-202ENST00000561976 FABP2P12104 132 aa10.88□□□□□ -0.67
VPS9D1-202ENST00000561976 CEACAM3P40198 252 aa10.88□□□□□ -0.67
VPS9D1-202ENST00000561976 ARPC1AQ92747 370 aa10.88□□□□□ -0.67
VPS9D1-202ENST00000561976 PIEZO2Q9H5I5 2752 aa10.88□□□□□ -0.67
VPS9D1-202ENST00000561976 F8W735 103 aaPredicted RBP10.88□□□□□ -0.67
VPS9D1-202ENST00000561976 NDUFA3O95167 84 aa10.88□□□□□ -0.67
VPS9D1-202ENST00000561976 PPIFP30405 207 aaKnown RBP10.88□□□□□ -0.67
VPS9D1-202ENST00000561976 COX8CQ7Z4L0 72 aa10.88□□□□□ -0.67
VPS9D1-202ENST00000561976 NPBQ8NG41 125 aa10.88□□□□□ -0.67
VPS9D1-202ENST00000561976 OR5A1Q8NGJ0 315 aa10.88□□□□□ -0.67
VPS9D1-202ENST00000561976 CFHR4Q92496 578 aa10.88□□□□□ -0.67
VPS9D1-202ENST00000561976 RNF185Q96GF1 192 aa10.88□□□□□ -0.67
VPS9D1-202ENST00000561976 TTTY13Q9BZ97 58 aa10.88□□□□□ -0.67
VPS9D1-202ENST00000561976 G3V4G9 280 aa10.88□□□□□ -0.67
VPS9D1-202ENST00000561976 IGKV2D-26A0A0A0MRZ7 120 aa10.87□□□□□ -0.67
VPS9D1-202ENST00000561976 FABP5P3A8MUU1 101 aa10.87□□□□□ -0.67
VPS9D1-202ENST00000561976 TNFRSF6BO95407 300 aa10.87□□□□□ -0.67
VPS9D1-202ENST00000561976 FCER1GP30273 86 aa10.87□□□□□ -0.67
VPS9D1-202ENST00000561976 ERCC8Q13216 396 aa10.87□□□□□ -0.67
VPS9D1-202ENST00000561976 SAMD5Q5TGI4 173 aa10.87□□□□□ -0.67
VPS9D1-202ENST00000561976 SMAD5-AS1Q9Y6J3 95 aa10.87□□□□□ -0.67
VPS9D1-202ENST00000561976 ZNF672Q499Z4 452 aaPredicted RBP10.87□□□□□ -0.67
VPS9D1-202ENST00000561976 NXT2Q9NPJ8 142 aaKnown RBP10.87□□□□□ -0.67
VPS9D1-202ENST00000561976 ARHGAP32A7KAX9 2087 aa10.86□□□□□ -0.67
VPS9D1-202ENST00000561976 ANKRD11Q6UB99 2663 aaPredicted RBP10.86□□□□□ -0.67
VPS9D1-202ENST00000561976 SCGB2A1O75556 95 aa10.86□□□□□ -0.67
VPS9D1-202ENST00000561976 GATA1P15976 413 aaPredicted RBP10.86□□□□□ -0.67
VPS9D1-202ENST00000561976 NDPQ00604 133 aa10.86□□□□□ -0.67
VPS9D1-202ENST00000561976 ODF1Q14990 250 aa10.86□□□□□ -0.67
VPS9D1-202ENST00000561976 ZNF562Q6V9R5 426 aa10.86□□□□□ -0.67
VPS9D1-202ENST00000561976 LINC01560Q8TB33 94 aa10.86□□□□□ -0.67
VPS9D1-202ENST00000561976 ZNF48Q96MX3 618 aaPredicted RBP10.86□□□□□ -0.67
VPS9D1-202ENST00000561976 FOXC2Q99958 501 aa10.86□□□□□ -0.67
VPS9D1-202ENST00000561976 LY6HO94772 140 aa10.86□□□□□ -0.67
VPS9D1-202ENST00000561976 IGKCP01834 107 aa10.86□□□□□ -0.67
VPS9D1-202ENST00000561976 FXYD2P54710 66 aa10.86□□□□□ -0.67
VPS9D1-202ENST00000561976 GTSCR1Q86UQ5 136 aa10.85□□□□□ -0.67
VPS9D1-202ENST00000561976 OR11H6Q8NGC7 330 aa10.85□□□□□ -0.67
VPS9D1-202ENST00000561976 TMEM158Q8WZ71 300 aa10.85□□□□□ -0.67
VPS9D1-202ENST00000561976 CHAC1Q9BUX1 264 aa10.85□□□□□ -0.67
VPS9D1-202ENST00000561976 IGHG4P01861 327 aa10.85□□□□□ -0.67
VPS9D1-202ENST00000561976 CTSGP08311 255 aa10.85□□□□□ -0.67
VPS9D1-202ENST00000561976 NEGR1Q7Z3B1 354 aa10.85□□□□□ -0.67
VPS9D1-202ENST00000561976 DYNAPQ8N1N2 210 aa10.85□□□□□ -0.67
VPS9D1-202ENST00000561976 TTC9CQ8N5M4 171 aa10.85□□□□□ -0.67
VPS9D1-202ENST00000561976 NPFFR1Q9GZQ6 430 aa10.85□□□□□ -0.67
VPS9D1-202ENST00000561976 HHLA3Q9XRX5 114 aa10.85□□□□□ -0.67
VPS9D1-202ENST00000561976 PRR30Q53SZ7 412 aaPredicted RBP10.84□□□□□ -0.67
VPS9D1-202ENST00000561976 ZNF575Q86XF7 245 aa10.84□□□□□ -0.67
VPS9D1-202ENST00000561976 ATMQ13315 3056 aa10.84□□□□□ -0.67
VPS9D1-202ENST00000561976 RPL24P83731 157 aaKnown RBP10.84□□□□□ -0.67
VPS9D1-202ENST00000561976 Q8NA96 180 aa10.84□□□□□ -0.67
VPS9D1-202ENST00000561976 LY6G5BQ8NDX9 201 aa10.84□□□□□ -0.67
VPS9D1-202ENST00000561976 AKAP13Q12802 2813 aa10.84□□□□□ -0.67
VPS9D1-202ENST00000561976 PRAC2D3DTV9 90 aa10.83□□□□□ -0.68
VPS9D1-202ENST00000561976 K7ERJ3 54 aa10.83□□□□□ -0.68
VPS9D1-202ENST00000561976 PSMG4Q5JS54 123 aa10.83□□□□□ -0.68
VPS9D1-202ENST00000561976 ZC2HC1BQ5TFG8 222 aa10.83□□□□□ -0.68
VPS9D1-202ENST00000561976 PIFOQ8TCI5 191 aa10.83□□□□□ -0.68
VPS9D1-202ENST00000561976 TMEM160Q9NX00 188 aa10.83□□□□□ -0.68
VPS9D1-202ENST00000561976 NDUFS8O00217 210 aa10.83□□□□□ -0.68
VPS9D1-202ENST00000561976 DPM2O94777 84 aa10.83□□□□□ -0.68
VPS9D1-202ENST00000561976 CFAP161Q6P656 301 aa10.83□□□□□ -0.68
VPS9D1-202ENST00000561976 DTX2Q86UW9 622 aa10.83□□□□□ -0.68
VPS9D1-202ENST00000561976 RNF182Q8N6D2 247 aa10.83□□□□□ -0.68
VPS9D1-202ENST00000561976 CNFNQ9BYD5 112 aa10.83□□□□□ -0.68
VPS9D1-202ENST00000561976 ZMAT4Q9H898 229 aa10.83□□□□□ -0.68
VPS9D1-202ENST00000561976 HIGD1BQ9P298 99 aa10.83□□□□□ -0.68
VPS9D1-202ENST00000561976 TMEM8BA6NDV4 472 aa10.82□□□□□ -0.68
VPS9D1-202ENST00000561976 SRSF2Q01130 221 aaKnown RBP10.82□□□□□ -0.68
VPS9D1-202ENST00000561976 IL17RELQ6ZVW7 336 aa10.82□□□□□ -0.68
VPS9D1-202ENST00000561976 NHP2Q9NX24 153 aaKnown RBP10.82□□□□□ -0.68
VPS9D1-202ENST00000561976 WNK2Q9Y3S1 2297 aa10.82□□□□□ -0.68
VPS9D1-202ENST00000561976 TRBV25-1A0A075B6N4 114 aa10.82□□□□□ -0.68
VPS9D1-202ENST00000561976 ATP5LO75964 103 aa10.82□□□□□ -0.68
VPS9D1-202ENST00000561976 IGHV3-66A0A0C4DH42 116 aa10.82□□□□□ -0.68
VPS9D1-202ENST00000561976 LINC01546A6NGU7 62 aa10.81□□□□□ -0.68
VPS9D1-202ENST00000561976 SMIM17P0DL12 118 aa10.81□□□□□ -0.68
VPS9D1-202ENST00000561976 LINC01559Q495D7 138 aa10.81□□□□□ -0.68
VPS9D1-202ENST00000561976 Q8N8P6 123 aa10.81□□□□□ -0.68
VPS9D1-202ENST00000561976 ABCA4P78363 2273 aa10.81□□□□□ -0.68
VPS9D1-202ENST00000561976 TRAV40A0A0B4J280 105 aa10.81□□□□□ -0.68
VPS9D1-202ENST00000561976 K7EMI3 77 aa10.81□□□□□ -0.68
VPS9D1-202ENST00000561976 MYOZ3Q8TDC0 251 aa10.81□□□□□ -0.68
VPS9D1-202ENST00000561976 TIMD4Q96H15 378 aa10.81□□□□□ -0.68
VPS9D1-202ENST00000561976 SMPXQ9UHP9 88 aa10.81□□□□□ -0.68
VPS9D1-202ENST00000561976 UFC1Q9Y3C8 167 aa10.81□□□□□ -0.68
VPS9D1-202ENST00000561976 IGHV3OR16-13A0A075B7E8 117 aa10.8□□□□□ -0.68
VPS9D1-202ENST00000561976 IGHV3-74A0A0B4J1X5 117 aa10.8□□□□□ -0.68
VPS9D1-202ENST00000561976 FAM90A27PA6NNH2 459 aa10.8□□□□□ -0.68
VPS9D1-202ENST00000561976 TRGV3P03979 118 aa10.8□□□□□ -0.68
VPS9D1-202ENST00000561976 PRTN3P24158 256 aa10.8□□□□□ -0.68
VPS9D1-202ENST00000561976 ODF3BA8MYP8 253 aa10.8□□□□□ -0.68
VPS9D1-202ENST00000561976 CCDC144NLQ6NUI1 221 aa10.8□□□□□ -0.68
VPS9D1-202ENST00000561976 CEND1Q8N111 149 aa10.79□□□□□ -0.68
VPS9D1-202ENST00000561976 MRPL35Q9NZE8 188 aaKnown RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms