RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 OR2D3Q8NGH3 330 aa13.63□□□□□ -0.23
SNX1-208ENST00000559844 PCP4L1A6NKN8 68 aa13.63□□□□□ -0.23
SNX1-208ENST00000559844 S100A12P80511 92 aa13.63□□□□□ -0.23
SNX1-208ENST00000559844 FAM209BQ5JX69 171 aa13.63□□□□□ -0.23
SNX1-208ENST00000559844 DNLZQ5SXM8 178 aa13.63□□□□□ -0.23
SNX1-208ENST00000559844 RBPMS2Q6ZRY4 209 aaKnown RBP13.63□□□□□ -0.23
SNX1-208ENST00000559844 TCF24Q7RTU0 167 aa13.63□□□□□ -0.23
SNX1-208ENST00000559844 COX8CQ7Z4L0 72 aa13.63□□□□□ -0.23
SNX1-208ENST00000559844 ATRQ13535 2644 aa13.63□□□□□ -0.23
SNX1-208ENST00000559844 LCN12Q6JVE5 192 aa13.62□□□□□ -0.23
SNX1-208ENST00000559844 Q8N2B8 174 aa13.62□□□□□ -0.23
SNX1-208ENST00000559844 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.62□□□□□ -0.23
SNX1-208ENST00000559844 IGKV2-40A0A087WW87 121 aaPredicted RBP13.62□□□□□ -0.23
SNX1-208ENST00000559844 A0A1B0GXF2 115 aa13.62□□□□□ -0.23
SNX1-208ENST00000559844 GRIFINA4D1Z8 144 aa13.62□□□□□ -0.23
SNX1-208ENST00000559844 IGKV2D-40P01614 121 aaPredicted RBP13.62□□□□□ -0.23
SNX1-208ENST00000559844 OR10J3Q5JRS4 329 aa13.62□□□□□ -0.23
SNX1-208ENST00000559844 GTSF1Q8WW33 167 aa13.62□□□□□ -0.23
SNX1-208ENST00000559844 MRPL53Q96EL3 112 aaKnown RBP13.62□□□□□ -0.23
SNX1-208ENST00000559844 CLEC5AQ9NY25 188 aa13.62□□□□□ -0.23
SNX1-208ENST00000559844 IGHV3-66A0A0C4DH42 116 aa13.61□□□□□ -0.23
SNX1-208ENST00000559844 TMEM89A2RUT3 159 aa13.61□□□□□ -0.23
SNX1-208ENST00000559844 RBAKDNA6NC62 111 aa13.61□□□□□ -0.23
SNX1-208ENST00000559844 APOHP02749 345 aaPredicted RBP13.61□□□□□ -0.23
SNX1-208ENST00000559844 HBBP68871 147 aa13.61□□□□□ -0.23
SNX1-208ENST00000559844 OR4X2Q8NGF9 303 aa13.61□□□□□ -0.23
SNX1-208ENST00000559844 KLK15Q9H2R5 256 aa13.61□□□□□ -0.23
SNX1-208ENST00000559844 ZNF207O43670 478 aaKnown RBP13.6□□□□□ -0.23
SNX1-208ENST00000559844 NDUFA7O95182 113 aa13.6□□□□□ -0.23
SNX1-208ENST00000559844 IGHG4P01861 327 aa13.6□□□□□ -0.23
SNX1-208ENST00000559844 ESDP10768 282 aa13.6□□□□□ -0.23
SNX1-208ENST00000559844 FOXA3P55318 350 aaPredicted RBP13.6□□□□□ -0.23
SNX1-208ENST00000559844 BAGE3Q86Y29 109 aa13.6□□□□□ -0.23
SNX1-208ENST00000559844 NDFIP1Q9BT67 221 aa13.6□□□□□ -0.23
SNX1-208ENST00000559844 TMEM256Q8N2U0 113 aa13.6□□□□□ -0.23
SNX1-208ENST00000559844 PGLYRP4Q96LB8 373 aa13.6□□□□□ -0.23
SNX1-208ENST00000559844 C8orf49Q96NF6 230 aa13.6□□□□□ -0.23
SNX1-208ENST00000559844 PRR25Q96S07 402 aa13.6□□□□□ -0.23
SNX1-208ENST00000559844 A0A1W2PS18 150 aa13.59□□□□□ -0.23
SNX1-208ENST00000559844 TRBV12-3P01733 135 aa13.59□□□□□ -0.23
SNX1-208ENST00000559844 IGHV3-11P01762 117 aa13.59□□□□□ -0.23
SNX1-208ENST00000559844 HLA-DMBP28068 263 aa13.59□□□□□ -0.23
SNX1-208ENST00000559844 KRTAP24-1Q3LI83 254 aa13.59□□□□□ -0.23
SNX1-208ENST00000559844 Q6AWC8 147 aa13.59□□□□□ -0.23
SNX1-208ENST00000559844 LINC01006Q8NI28 216 aa13.59□□□□□ -0.23
SNX1-208ENST00000559844 GLMPQ8WWB7 406 aa13.59□□□□□ -0.23
SNX1-208ENST00000559844 C16orf95Q9H693 158 aa13.59□□□□□ -0.23
SNX1-208ENST00000559844 IGHV3OR16-13A0A075B7E8 117 aa13.58□□□□□ -0.24
SNX1-208ENST00000559844 IGHV3-74A0A0B4J1X5 117 aa13.58□□□□□ -0.24
SNX1-208ENST00000559844 CRIP1P50238 77 aa13.58□□□□□ -0.24
SNX1-208ENST00000559844 PAFAH1B2P68402 229 aa13.58□□□□□ -0.24
SNX1-208ENST00000559844 FAM162BQ5T6X4 162 aa13.58□□□□□ -0.24
SNX1-208ENST00000559844 IGFL4Q6B9Z1 124 aa13.58□□□□□ -0.24
SNX1-208ENST00000559844 TP53TG3Q9ULZ0 132 aa13.58□□□□□ -0.24
SNX1-208ENST00000559844 IGHV3-49A0A0A0MS15 119 aa13.58□□□□□ -0.24
SNX1-208ENST00000559844 SRIP30626 198 aa13.58□□□□□ -0.24
SNX1-208ENST00000559844 CAMPP49913 170 aa13.58□□□□□ -0.24
SNX1-208ENST00000559844 KIAA1644Q3SXP7 199 aa13.58□□□□□ -0.24
SNX1-208ENST00000559844 ASCL2Q99929 193 aa13.58□□□□□ -0.24
SNX1-208ENST00000559844 A0A1B0GUS0 222 aa13.57□□□□□ -0.24
SNX1-208ENST00000559844 ZNF705FA8MVS1 300 aaPredicted RBP13.57□□□□□ -0.24
SNX1-208ENST00000559844 BMI1P35226 326 aa13.57□□□□□ -0.24
SNX1-208ENST00000559844 SLAQ13239 276 aa13.57□□□□□ -0.24
SNX1-208ENST00000559844 JOSD1Q15040 202 aaPredicted RBP13.57□□□□□ -0.24
SNX1-208ENST00000559844 GDF5OSQ5U4N7 250 aa13.57□□□□□ -0.24
SNX1-208ENST00000559844 C8orf86Q6ZUL3 223 aa13.57□□□□□ -0.24
SNX1-208ENST00000559844 VGLL1Q99990 258 aa13.57□□□□□ -0.24
SNX1-208ENST00000559844 A8MWP6 167 aa13.56□□□□□ -0.24
SNX1-208ENST00000559844 HAX1O00165 279 aa13.56□□□□□ -0.24
SNX1-208ENST00000559844 SH2D1AO60880 128 aa13.56□□□□□ -0.24
SNX1-208ENST00000559844 SERF1AO75920 110 aa13.56□□□□□ -0.24
SNX1-208ENST00000559844 PSMB8P28062 276 aa13.56□□□□□ -0.24
SNX1-208ENST00000559844 UNQ9165/PRO28630Q6UXU0 137 aa13.56□□□□□ -0.24
SNX1-208ENST00000559844 PEF1Q9UBV8 284 aaKnown RBP13.56□□□□□ -0.24
SNX1-208ENST00000559844 PRB4P10163 310 aaPredicted RBP13.56□□□□□ -0.24
SNX1-208ENST00000559844 TRAV8-2A0A0B4J237 113 aa13.55□□□□□ -0.24
SNX1-208ENST00000559844 A0A1B0GW15 77 aa13.55□□□□□ -0.24
SNX1-208ENST00000559844 TMEM189A5PLL7 270 aa13.55□□□□□ -0.24
SNX1-208ENST00000559844 NUPR1O60356 82 aa13.55□□□□□ -0.24
SNX1-208ENST00000559844 GZMBP10144 247 aa13.55□□□□□ -0.24
SNX1-208ENST00000559844 RPS20P60866 119 aaKnown RBP13.55□□□□□ -0.24
SNX1-208ENST00000559844 RIGQ13278 110 aa13.55□□□□□ -0.24
SNX1-208ENST00000559844 RNF182Q8N6D2 247 aa13.55□□□□□ -0.24
SNX1-208ENST00000559844 RNF114Q9Y508 228 aa13.55□□□□□ -0.24
SNX1-208ENST00000559844 Q8TAT8 98 aa13.54□□□□□ -0.24
SNX1-208ENST00000559844 BORCS7Q96B45 105 aa13.54□□□□□ -0.24
SNX1-208ENST00000559844 C16orf92Q96LL3 132 aa13.54□□□□□ -0.24
SNX1-208ENST00000559844 A0A1B0GUT8 65 aa13.54□□□□□ -0.24
SNX1-208ENST00000559844 LINC00310P59036 64 aa13.54□□□□□ -0.24
SNX1-208ENST00000559844 LCNL1Q6ZST4 164 aa13.54□□□□□ -0.24
SNX1-208ENST00000559844 GSN-AS1Q9NRJ2 163 aa13.54□□□□□ -0.24
SNX1-208ENST00000559844 FBN1P35555 2871 aaKnown RBP13.54□□□□□ -0.24
SNX1-208ENST00000559844 PRAC2D3DTV9 90 aa13.53□□□□□ -0.24
SNX1-208ENST00000559844 K7EMT4 169 aa13.53□□□□□ -0.24
SNX1-208ENST00000559844 KLF5Q13887 457 aaPredicted RBP13.53□□□□□ -0.24
SNX1-208ENST00000559844 FAM106AQ4KMX7 169 aa13.53□□□□□ -0.24
SNX1-208ENST00000559844 KLHDC1Q8N7A1 406 aa13.53□□□□□ -0.24
SNX1-208ENST00000559844 TMEM158Q8WZ71 300 aa13.53□□□□□ -0.24
SNX1-208ENST00000559844 SSBP4Q9BWG4 385 aaPredicted RBP13.53□□□□□ -0.24
SNX1-208ENST00000559844 C10orf99Q6UWK7 81 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms