RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 BOD1L2Q8IYS8 172 aa8.92□□□□□ -0.98
LDLR-208ENST00000558518 ZNF418Q8TF45 676 aaPredicted RBP8.92□□□□□ -0.98
LDLR-208ENST00000558518 DCHS2Q6V1P9 2916 aa8.92□□□□□ -0.98
LDLR-208ENST00000558518 TMEM8BA6NDV4 472 aa8.92□□□□□ -0.98
LDLR-208ENST00000558518 ZNF80P51504 273 aaPredicted RBP8.92□□□□□ -0.98
LDLR-208ENST00000558518 EMP1P54849 157 aa8.92□□□□□ -0.98
LDLR-208ENST00000558518 CUL9Q8IWT3 2517 aa8.92□□□□□ -0.98
LDLR-208ENST00000558518 A0A1B0GWB2 263 aa8.91□□□□□ -0.98
LDLR-208ENST00000558518 APOBEC3AP31941 199 aaPredicted RBP8.91□□□□□ -0.98
LDLR-208ENST00000558518 OR4X2Q8NGF9 303 aa8.91□□□□□ -0.98
LDLR-208ENST00000558518 ZNF479Q96JC4 524 aa8.91□□□□□ -0.98
LDLR-208ENST00000558518 CYSLTR1Q9Y271 337 aa8.91□□□□□ -0.98
LDLR-208ENST00000558518 GATA4P43694 442 aa8.91□□□□□ -0.98
LDLR-208ENST00000558518 ECSCRQ19T08 205 aa8.91□□□□□ -0.98
LDLR-208ENST00000558518 ZNF491Q8N8L2 437 aa8.91□□□□□ -0.98
LDLR-208ENST00000558518 OR9G4Q8NGQ1 327 aa8.91□□□□□ -0.98
LDLR-208ENST00000558518 SHANK2-AS3Q9BTD1 123 aa8.91□□□□□ -0.98
LDLR-208ENST00000558518 MRPL35Q9NZE8 188 aaKnown RBP8.91□□□□□ -0.98
LDLR-208ENST00000558518 IGKCP01834 107 aa8.9□□□□□ -0.98
LDLR-208ENST00000558518 INSL3P51460 131 aa8.9□□□□□ -0.98
LDLR-208ENST00000558518 LGALS9BQ3B8N2 356 aa8.9□□□□□ -0.98
LDLR-208ENST00000558518 LGALS9CQ6DKI2 356 aa8.9□□□□□ -0.98
LDLR-208ENST00000558518 SIGMAR1Q99720 223 aa8.9□□□□□ -0.98
LDLR-208ENST00000558518 NACAE9PAV3 2078 aa8.9□□□□□ -0.98
LDLR-208ENST00000558518 VSTM5A8MXK1 200 aa8.9□□□□□ -0.98
LDLR-208ENST00000558518 H3BVH4 76 aa8.9□□□□□ -0.98
LDLR-208ENST00000558518 UFSP1Q6NVU6 142 aa8.9□□□□□ -0.98
LDLR-208ENST00000558518 TRBV25-1A0A075B6N4 114 aa8.9□□□□□ -0.99
LDLR-208ENST00000558518 SCGB1D4Q6XE38 83 aa8.9□□□□□ -0.99
LDLR-208ENST00000558518 TEX22C9J3V5 150 aa8.89□□□□□ -0.99
LDLR-208ENST00000558518 TNFRSF6BO95407 300 aa8.89□□□□□ -0.99
LDLR-208ENST00000558518 APOMO95445 188 aa8.89□□□□□ -0.99
LDLR-208ENST00000558518 RPL11P62913 178 aaKnown RBP8.89□□□□□ -0.99
LDLR-208ENST00000558518 SPANXN1Q5VSR9 72 aa8.89□□□□□ -0.99
LDLR-208ENST00000558518 GFRALQ6UXV0 394 aa8.89□□□□□ -0.99
LDLR-208ENST00000558518 Q6ZQT7 251 aa8.89□□□□□ -0.99
LDLR-208ENST00000558518 ZNF502Q8TBZ5 544 aa8.89□□□□□ -0.99
LDLR-208ENST00000558518 MBD3L4A6NDZ8 208 aaPredicted RBP8.89□□□□□ -0.99
LDLR-208ENST00000558518 MBD3L3A6NE82 208 aaPredicted RBP8.89□□□□□ -0.99
LDLR-208ENST00000558518 MBD3L5A6NJ08 208 aaPredicted RBP8.89□□□□□ -0.99
LDLR-208ENST00000558518 OR5A1Q8NGJ0 315 aa8.89□□□□□ -0.99
LDLR-208ENST00000558518 MBD3L2Q8NHZ7 208 aaPredicted RBP8.89□□□□□ -0.99
LDLR-208ENST00000558518 MYOZ3Q8TDC0 251 aa8.89□□□□□ -0.99
LDLR-208ENST00000558518 ABHD17AQ96GS6 310 aa8.89□□□□□ -0.99
LDLR-208ENST00000558518 H7C2G1 150 aa8.88□□□□□ -0.99
LDLR-208ENST00000558518 M0R381 172 aa8.88□□□□□ -0.99
LDLR-208ENST00000558518 FTH1P19P0C7X4 201 aa8.88□□□□□ -0.99
LDLR-208ENST00000558518 C3orf36Q3SXR2 165 aa8.88□□□□□ -0.99
LDLR-208ENST00000558518 BUB1B-PAK6H3BSN5 160 aa8.88□□□□□ -0.99
LDLR-208ENST00000558518 I3L2K1 104 aa8.88□□□□□ -0.99
LDLR-208ENST00000558518 K7EIM0 57 aa8.88□□□□□ -0.99
LDLR-208ENST00000558518 PRRG2O14669 202 aa8.88□□□□□ -0.99
LDLR-208ENST00000558518 TRGV3P03979 118 aa8.88□□□□□ -0.99
LDLR-208ENST00000558518 CRYGCP07315 174 aa8.88□□□□□ -0.99
LDLR-208ENST00000558518 RBPJQ06330 500 aa8.88□□□□□ -0.99
LDLR-208ENST00000558518 TEX36Q5VZQ5 186 aa8.88□□□□□ -0.99
LDLR-208ENST00000558518 LINC01560Q8TB33 94 aa8.88□□□□□ -0.99
LDLR-208ENST00000558518 RNASE6Q93091 150 aaKnown RBP8.88□□□□□ -0.99
LDLR-208ENST00000558518 CLUHP3Q96NS8 147 aa8.88□□□□□ -0.99
LDLR-208ENST00000558518 PRAC2D3DTV9 90 aa8.88□□□□□ -0.99
LDLR-208ENST00000558518 MGPP08493 103 aa8.88□□□□□ -0.99
LDLR-208ENST00000558518 SRSF9Q13242 221 aaKnown RBP eCLIP8.88□□□□□ -0.99
LDLR-208ENST00000558518 SMIM17P0DL12 118 aa8.87□□□□□ -0.99
LDLR-208ENST00000558518 MRGPRG-AS1Q2M3A8 158 aa8.87□□□□□ -0.99
LDLR-208ENST00000558518 TMEM155Q4W5P6 130 aa8.87□□□□□ -0.99
LDLR-208ENST00000558518 IL17RELQ6ZVW7 336 aa8.87□□□□□ -0.99
LDLR-208ENST00000558518 MAPKAPK5-AS1Q8N8E1 139 aa8.87□□□□□ -0.99
LDLR-208ENST00000558518 PRR25Q96S07 402 aa8.87□□□□□ -0.99
LDLR-208ENST00000558518 VKORC1Q9BQB6 163 aa8.87□□□□□ -0.99
LDLR-208ENST00000558518 LINC00527Q9UJ94 153 aa8.87□□□□□ -0.99
LDLR-208ENST00000558518 CUBNO60494 3623 aa8.87□□□□□ -0.99
LDLR-208ENST00000558518 NCOR2Q9Y618 2525 aa8.87□□□□□ -0.99
LDLR-208ENST00000558518 C19orf67A6NJJ6 358 aa8.87□□□□□ -0.99
LDLR-208ENST00000558518 J3QR89 54 aa8.87□□□□□ -0.99
LDLR-208ENST00000558518 GAGE12HA6NDE8 117 aa8.87□□□□□ -0.99
LDLR-208ENST00000558518 DPM2O94777 84 aa8.87□□□□□ -0.99
LDLR-208ENST00000558518 FAM90A27PA6NNH2 459 aa8.86□□□□□ -0.99
LDLR-208ENST00000558518 H3BRN7 92 aa8.86□□□□□ -0.99
LDLR-208ENST00000558518 CIDEAO60543 219 aa8.86□□□□□ -0.99
LDLR-208ENST00000558518 MFAP4P55083 255 aa8.86□□□□□ -0.99
LDLR-208ENST00000558518 DEFB1P60022 68 aa8.86□□□□□ -0.99
LDLR-208ENST00000558518 NDPQ00604 133 aa8.86□□□□□ -0.99
LDLR-208ENST00000558518 NEGR1Q7Z3B1 354 aa8.86□□□□□ -0.99
LDLR-208ENST00000558518 C21orf62Q9NYP8 219 aa8.86□□□□□ -0.99
LDLR-208ENST00000558518 A0A0G2JNJ9 132 aa8.86□□□□□ -0.99
LDLR-208ENST00000558518 RPS20P60866 119 aaKnown RBP8.86□□□□□ -0.99
LDLR-208ENST00000558518 MRPL16Q9NX20 251 aaKnown RBP8.86□□□□□ -0.99
LDLR-208ENST00000558518 Q9UFV3 132 aa8.86□□□□□ -0.99
LDLR-208ENST00000558518 PSMB2P49721 201 aa8.86□□□□□ -0.99
LDLR-208ENST00000558518 TTC9CQ8N5M4 171 aa8.86□□□□□ -0.99
LDLR-208ENST00000558518 GLMPQ8WWB7 406 aa8.86□□□□□ -0.99
LDLR-208ENST00000558518 S100A4P26447 101 aaKnown RBP8.85□□□□□ -0.99
LDLR-208ENST00000558518 BMI1P35226 326 aa8.85□□□□□ -0.99
LDLR-208ENST00000558518 ODF1Q14990 250 aa8.85□□□□□ -0.99
LDLR-208ENST00000558518 Q6AWC8 147 aa8.85□□□□□ -0.99
LDLR-208ENST00000558518 DTX2Q86UW9 622 aa8.85□□□□□ -0.99
LDLR-208ENST00000558518 DYNAPQ8N1N2 210 aa8.85□□□□□ -0.99
LDLR-208ENST00000558518 SRSF8Q9BRL6 282 aaKnown RBP8.85□□□□□ -0.99
LDLR-208ENST00000558518 PTPRQQ9UMZ3 2332 aa8.85□□□□□ -0.99
LDLR-208ENST00000558518 PTH2Q96A98 100 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms