RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 TNFRSF13BO14836 293 aaPredicted RBP8.59□□□□□ -1.03
USP3-206ENST00000558157 DPM2O94777 84 aa8.59□□□□□ -1.03
USP3-206ENST00000558157 MT-ATP8P03928 68 aa8.59□□□□□ -1.03
USP3-206ENST00000558157 SPRNQ5BIV9 151 aa8.59□□□□□ -1.03
USP3-206ENST00000558157 SS18L2Q9UHA2 77 aa8.59□□□□□ -1.03
USP3-206ENST00000558157 TFF1P04155 84 aa8.58□□□□□ -1.04
USP3-206ENST00000558157 SAA1P0DJI8 122 aaPredicted RBP8.58□□□□□ -1.04
USP3-206ENST00000558157 TCTAP57738 103 aa8.58□□□□□ -1.04
USP3-206ENST00000558157 ZFAND6Q6FIF0 208 aa8.58□□□□□ -1.04
USP3-206ENST00000558157 PRNTQ86SH4 94 aa8.58□□□□□ -1.04
USP3-206ENST00000558157 PPDPFLQ8WWR9 84 aa8.58□□□□□ -1.04
USP3-206ENST00000558157 TMEM158Q8WZ71 300 aa8.58□□□□□ -1.04
USP3-206ENST00000558157 DLX4Q92988 240 aaPredicted RBP8.58□□□□□ -1.04
USP3-206ENST00000558157 SLC25A39Q9BZJ4 359 aaPredicted RBP8.58□□□□□ -1.04
USP3-206ENST00000558157 TMEM133Q9H2Q1 129 aa8.58□□□□□ -1.04
USP3-206ENST00000558157 SPTBN1Q01082 2364 aaKnown RBP8.58□□□□□ -1.04
USP3-206ENST00000558157 ZNF785A8K8V0 405 aa8.58□□□□□ -1.04
USP3-206ENST00000558157 SRRM5B3KS81 715 aa8.58□□□□□ -1.04
USP3-206ENST00000558157 IGHV1-46P01743 117 aa8.58□□□□□ -1.04
USP3-206ENST00000558157 ORM2P19652 201 aa8.58□□□□□ -1.04
USP3-206ENST00000558157 XGP55808 180 aa8.58□□□□□ -1.04
USP3-206ENST00000558157 HOXA4Q00056 320 aaPredicted RBP8.58□□□□□ -1.04
USP3-206ENST00000558157 C17orf58Q2M2W7 97 aa8.58□□□□□ -1.04
USP3-206ENST00000558157 LYRM7Q5U5X0 104 aa8.58□□□□□ -1.04
USP3-206ENST00000558157 IGKV1D-17A0A075B6S4 117 aa8.57□□□□□ -1.04
USP3-206ENST00000558157 FCER1GP30273 86 aa8.57□□□□□ -1.04
USP3-206ENST00000558157 ZNF672Q499Z4 452 aaPredicted RBP8.57□□□□□ -1.04
USP3-206ENST00000558157 AMTNQ6UX39 209 aa8.57□□□□□ -1.04
USP3-206ENST00000558157 RAX2Q96IS3 184 aa8.57□□□□□ -1.04
USP3-206ENST00000558157 TRBV7-9A0A0J9YWB2 115 aa8.56□□□□□ -1.04
USP3-206ENST00000558157 MRPL51Q4U2R6 128 aaKnown RBP8.56□□□□□ -1.04
USP3-206ENST00000558157 TEX29Q8N6K0 151 aa8.56□□□□□ -1.04
USP3-206ENST00000558157 LINC00574Q9H8X3 128 aa8.56□□□□□ -1.04
USP3-206ENST00000558157 NXT2Q9NPJ8 142 aaKnown RBP8.56□□□□□ -1.04
USP3-206ENST00000558157 FLNCQ14315 2725 aa8.56□□□□□ -1.04
USP3-206ENST00000558157 ICE1Q9Y2F5 2266 aa8.56□□□□□ -1.04
USP3-206ENST00000558157 IGKV1-16P04430 117 aa8.56□□□□□ -1.04
USP3-206ENST00000558157 CKS2P33552 79 aa8.56□□□□□ -1.04
USP3-206ENST00000558157 TNFAIP6P98066 277 aaPredicted RBP8.56□□□□□ -1.04
USP3-206ENST00000558157 GOLT1AQ6ZVE7 132 aa8.56□□□□□ -1.04
USP3-206ENST00000558157 LYPD1Q8N2G4 141 aa8.56□□□□□ -1.04
USP3-206ENST00000558157 HIST1H4GQ99525 98 aa8.56□□□□□ -1.04
USP3-206ENST00000558157 MAP1LC3AQ9H492 121 aa8.56□□□□□ -1.04
USP3-206ENST00000558157 ROS1P08922 2347 aa8.56□□□□□ -1.04
USP3-206ENST00000558157 TRAV8-1A0A0A6YYK1 113 aa8.55□□□□□ -1.04
USP3-206ENST00000558157 GATA3P23771 443 aa8.55□□□□□ -1.04
USP3-206ENST00000558157 ZC2HC1BQ5TFG8 222 aa8.55□□□□□ -1.04
USP3-206ENST00000558157 PVRIGQ6DKI7 326 aa8.55□□□□□ -1.04
USP3-206ENST00000558157 MOGAT3Q86VF5 341 aa8.55□□□□□ -1.04
USP3-206ENST00000558157 TEN1Q86WV5 123 aa8.55□□□□□ -1.04
USP3-206ENST00000558157 AMN1Q8IY45 258 aa8.55□□□□□ -1.04
USP3-206ENST00000558157 TMEM167AQ8TBQ9 72 aa8.55□□□□□ -1.04
USP3-206ENST00000558157 FLYWCH2Q96CP2 140 aaKnown RBP8.55□□□□□ -1.04
USP3-206ENST00000558157 HRNRQ86YZ3 2850 aaPredicted RBP8.55□□□□□ -1.04
USP3-206ENST00000558157 TRBV7-3A0A075B6L6 115 aa8.55□□□□□ -1.04
USP3-206ENST00000558157 C17orf100A8MU93 164 aa8.55□□□□□ -1.04
USP3-206ENST00000558157 SRD5A1P18405 259 aa8.55□□□□□ -1.04
USP3-206ENST00000558157 DYNLRB1Q9NP97 96 aa8.55□□□□□ -1.04
USP3-206ENST00000558157 UBR5O95071 2799 aaPredicted RBP8.55□□□□□ -1.04
USP3-206ENST00000558157 IL4P05112 153 aa8.54□□□□□ -1.04
USP3-206ENST00000558157 PRSS1P07477 247 aa8.54□□□□□ -1.04
USP3-206ENST00000558157 NFE4Q86UQ8 179 aa8.54□□□□□ -1.04
USP3-206ENST00000558157 HARBI1Q96MB7 349 aa8.54□□□□□ -1.04
USP3-206ENST00000558157 PKDREJQ9NTG1 2253 aa8.54□□□□□ -1.04
USP3-206ENST00000558157 DYSFO75923 2080 aa8.54□□□□□ -1.04
USP3-206ENST00000558157 MYO18BQ8IUG5 2567 aa8.54□□□□□ -1.04
USP3-206ENST00000558157 USP9XQ93008 2570 aaPredicted RBP8.54□□□□□ -1.04
USP3-206ENST00000558157 B9A039 149 aa8.54□□□□□ -1.04
USP3-206ENST00000558157 HOXA3O43365 443 aaPredicted RBP8.54□□□□□ -1.04
USP3-206ENST00000558157 GATA4P43694 442 aa8.54□□□□□ -1.04
USP3-206ENST00000558157 CCL8P80075 99 aa8.54□□□□□ -1.04
USP3-206ENST00000558157 WT1-ASQ06250 92 aa8.54□□□□□ -1.04
USP3-206ENST00000558157 SHISA2Q6UWI4 295 aa8.54□□□□□ -1.04
USP3-206ENST00000558157 LYZL1Q6UWQ5 148 aa8.54□□□□□ -1.04
USP3-206ENST00000558157 LEAP2Q969E1 77 aa8.54□□□□□ -1.04
USP3-206ENST00000558157 HIGD1AQ9Y241 93 aa8.54□□□□□ -1.04
USP3-206ENST00000558157 DOPEY1Q5JWR5 2465 aa8.54□□□□□ -1.04
USP3-206ENST00000558157 CHD6Q8TD26 2715 aa8.53□□□□□ -1.04
USP3-206ENST00000558157 NCBP2LA6PVI3 153 aaKnown RBP8.53□□□□□ -1.04
USP3-206ENST00000558157 NPYP01303 97 aa8.53□□□□□ -1.04
USP3-206ENST00000558157 SMCPP49901 116 aaPredicted RBP8.53□□□□□ -1.04
USP3-206ENST00000558157 FHL3Q13643 280 aa8.53□□□□□ -1.04
USP3-206ENST00000558157 GTSCR1Q86UQ5 136 aa8.53□□□□□ -1.04
USP3-206ENST00000558157 A0A1W2PPR1 153 aa8.53□□□□□ -1.04
USP3-206ENST00000558157 B5MCH6 92 aa8.53□□□□□ -1.04
USP3-206ENST00000558157 IGHG4P01861 327 aa8.53□□□□□ -1.04
USP3-206ENST00000558157 ZNF688P0C7X2 276 aa8.53□□□□□ -1.04
USP3-206ENST00000558157 PLNP26678 52 aa8.53□□□□□ -1.04
USP3-206ENST00000558157 MORN3Q6PF18 240 aaPredicted RBP8.53□□□□□ -1.04
USP3-206ENST00000558157 ZNF833PQ6ZTB9 187 aa8.53□□□□□ -1.04
USP3-206ENST00000558157 CITED1Q99966 193 aa8.53□□□□□ -1.04
USP3-206ENST00000558157 TTTY13Q9BZ97 58 aa8.53□□□□□ -1.04
USP3-206ENST00000558157 UFC1Q9Y3C8 167 aa8.53□□□□□ -1.04
USP3-206ENST00000558157 LEPP41159 167 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 COX8CQ7Z4L0 72 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 SBSPONQ8IVN8 264 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 TPPP3Q9BW30 176 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 MRPL36Q9P0J6 103 aaKnown RBP8.52□□□□□ -1.05
USP3-206ENST00000558157 ARFGEF3Q5TH69 2177 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 TRBV20-1A0A075B6N2 111 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms