RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 APOHP02749 345 aaPredicted RBP12.91□□□□□ -0.34
LDLR-206ENST00000557958 LCN12Q6JVE5 192 aa12.91□□□□□ -0.34
LDLR-206ENST00000557958 GLMPQ8WWB7 406 aa12.91□□□□□ -0.34
LDLR-206ENST00000557958 MRPL18Q9H0U6 180 aaKnown RBP12.91□□□□□ -0.34
LDLR-206ENST00000557958 ZNF702PQ9H963 129 aa12.91□□□□□ -0.34
LDLR-206ENST00000557958 DAZ1Q9NQZ3 744 aaKnown RBP12.91□□□□□ -0.34
LDLR-206ENST00000557958 IGHV3-49A0A0A0MS15 119 aa12.9□□□□□ -0.34
LDLR-206ENST00000557958 HIGD1CA8MV81 97 aa12.9□□□□□ -0.34
LDLR-206ENST00000557958 BMI1P35226 326 aa12.9□□□□□ -0.34
LDLR-206ENST00000557958 IQCJQ1A5X6 159 aa12.9□□□□□ -0.34
LDLR-206ENST00000557958 UNQ9165/PRO28630Q6UXU0 137 aa12.9□□□□□ -0.34
LDLR-206ENST00000557958 LCNL1Q6ZST4 164 aa12.9□□□□□ -0.34
LDLR-206ENST00000557958 WIPF2Q8TF74 440 aaPredicted RBP12.9□□□□□ -0.34
LDLR-206ENST00000557958 ZC2HC1AQ96GY0 325 aa12.9□□□□□ -0.34
LDLR-206ENST00000557958 NDUFAF3Q9BU61 184 aa12.9□□□□□ -0.34
LDLR-206ENST00000557958 ESM1Q9NQ30 184 aa12.9□□□□□ -0.34
LDLR-206ENST00000557958 IGKV2-40A0A087WW87 121 aaPredicted RBP12.89□□□□□ -0.35
LDLR-206ENST00000557958 FAM181BA6NEQ2 426 aa12.89□□□□□ -0.35
LDLR-206ENST00000557958 IGKV2D-40P01614 121 aaPredicted RBP12.89□□□□□ -0.35
LDLR-206ENST00000557958 RAB4BP61018 213 aa12.89□□□□□ -0.35
LDLR-206ENST00000557958 MRPL54Q6P161 138 aaKnown RBP12.89□□□□□ -0.35
LDLR-206ENST00000557958 LINC00322Q6ZN03 302 aaPredicted RBP12.89□□□□□ -0.35
LDLR-206ENST00000557958 C8orf86Q6ZUL3 223 aa12.89□□□□□ -0.35
LDLR-206ENST00000557958 NUP35Q8NFH5 326 aa12.89□□□□□ -0.35
LDLR-206ENST00000557958 C2orf88Q9BSF0 95 aa12.89□□□□□ -0.35
LDLR-206ENST00000557958 MXRA5Q9NR99 2828 aa12.89□□□□□ -0.35
LDLR-206ENST00000557958 K7EMT4 169 aa12.89□□□□□ -0.35
LDLR-206ENST00000557958 SPINK4O60575 86 aa12.89□□□□□ -0.35
LDLR-206ENST00000557958 COX8CQ7Z4L0 72 aa12.89□□□□□ -0.35
LDLR-206ENST00000557958 ZNF664Q8N3J9 261 aa12.89□□□□□ -0.35
LDLR-206ENST00000557958 OR2D3Q8NGH3 330 aa12.89□□□□□ -0.35
LDLR-206ENST00000557958 ZNF418Q8TF45 676 aaPredicted RBP12.89□□□□□ -0.35
LDLR-206ENST00000557958 RBPMS2Q6ZRY4 209 aaKnown RBP12.88□□□□□ -0.35
LDLR-206ENST00000557958 GPHB5Q86YW7 130 aa12.88□□□□□ -0.35
LDLR-206ENST00000557958 Q8N2B8 174 aa12.88□□□□□ -0.35
LDLR-206ENST00000557958 UFC1Q9Y3C8 167 aa12.88□□□□□ -0.35
LDLR-206ENST00000557958 FAM162BQ5T6X4 162 aa12.87□□□□□ -0.35
LDLR-206ENST00000557958 TMEM136Q6ZRR5 245 aa12.87□□□□□ -0.35
LDLR-206ENST00000557958 C16orf92Q96LL3 132 aa12.87□□□□□ -0.35
LDLR-206ENST00000557958 PRR25Q96S07 402 aa12.87□□□□□ -0.35
LDLR-206ENST00000557958 IGHV7-4-1A0A0J9YVY3 117 aa12.87□□□□□ -0.35
LDLR-206ENST00000557958 Q6AWC8 147 aa12.87□□□□□ -0.35
LDLR-206ENST00000557958 IGFL4Q6B9Z1 124 aa12.87□□□□□ -0.35
LDLR-206ENST00000557958 SAMD13Q5VXD3 122 aa12.86□□□□□ -0.35
LDLR-206ENST00000557958 HIVEP2P31629 2446 aa12.85□□□□□ -0.35
LDLR-206ENST00000557958 ZNF705FA8MVS1 300 aaPredicted RBP12.85□□□□□ -0.35
LDLR-206ENST00000557958 RPLP1P05386 114 aaKnown RBP12.85□□□□□ -0.35
LDLR-206ENST00000557958 LGALS1P09382 135 aaKnown RBP12.85□□□□□ -0.35
LDLR-206ENST00000557958 CRISP2P16562 243 aa12.85□□□□□ -0.35
LDLR-206ENST00000557958 HLA-DMBP28068 263 aa12.85□□□□□ -0.35
LDLR-206ENST00000557958 HBBP68871 147 aa12.85□□□□□ -0.35
LDLR-206ENST00000557958 C10orf99Q6UWK7 81 aa12.85□□□□□ -0.35
LDLR-206ENST00000557958 RNF182Q8N6D2 247 aa12.85□□□□□ -0.35
LDLR-206ENST00000557958 RNF152Q8N8N0 203 aa12.85□□□□□ -0.35
LDLR-206ENST00000557958 MYOZ3Q8TDC0 251 aa12.85□□□□□ -0.35
LDLR-206ENST00000557958 UBE2E2Q96LR5 201 aa12.85□□□□□ -0.35
LDLR-206ENST00000557958 VGLL1Q99990 258 aa12.85□□□□□ -0.35
LDLR-206ENST00000557958 APCSP02743 223 aa12.85□□□□□ -0.35
LDLR-206ENST00000557958 ESDP10768 282 aa12.85□□□□□ -0.35
LDLR-206ENST00000557958 TMEM78Q5T7P6 136 aa12.85□□□□□ -0.35
LDLR-206ENST00000557958 TCF24Q7RTU0 167 aa12.85□□□□□ -0.35
LDLR-206ENST00000557958 C8orf49Q96NF6 230 aa12.85□□□□□ -0.35
LDLR-206ENST00000557958 RHPN1-AS1Q9BWJ2 59 aa12.85□□□□□ -0.35
LDLR-206ENST00000557958 KIR2DL5BA0A0G2JN68 375 aa12.84□□□□□ -0.35
LDLR-206ENST00000557958 KIR2DL5BA0A0G2JPC4 375 aa12.84□□□□□ -0.35
LDLR-206ENST00000557958 A0A1B0GV90 55 aa12.84□□□□□ -0.35
LDLR-206ENST00000557958 KIR2DL5AQ8N109 375 aa12.84□□□□□ -0.35
LDLR-206ENST00000557958 NRN1Q9NPD7 142 aa12.84□□□□□ -0.35
LDLR-206ENST00000557958 SMPXQ9UHP9 88 aa12.84□□□□□ -0.35
LDLR-206ENST00000557958 TRAV8-2A0A0B4J237 113 aa12.83□□□□□ -0.36
LDLR-206ENST00000557958 FOXA3P55318 350 aaPredicted RBP12.83□□□□□ -0.36
LDLR-206ENST00000557958 RPL11P62913 178 aaKnown RBP12.83□□□□□ -0.36
LDLR-206ENST00000557958 GTSF1Q8WW33 167 aa12.83□□□□□ -0.36
LDLR-206ENST00000557958 BORCS7Q96B45 105 aa12.83□□□□□ -0.36
LDLR-206ENST00000557958 PGLYRP4Q96LB8 373 aa12.83□□□□□ -0.36
LDLR-206ENST00000557958 RPS20P60866 119 aaKnown RBP12.82□□□□□ -0.36
LDLR-206ENST00000557958 TM4SF20Q53R12 229 aa12.82□□□□□ -0.36
LDLR-206ENST00000557958 Q8TAT8 98 aa12.82□□□□□ -0.36
LDLR-206ENST00000557958 A0A1B0GW15 77 aa12.82□□□□□ -0.36
LDLR-206ENST00000557958 A0A1B0GXF2 115 aa12.82□□□□□ -0.36
LDLR-206ENST00000557958 TMEM189A5PLL7 270 aa12.82□□□□□ -0.36
LDLR-206ENST00000557958 SH2D1AO60880 128 aa12.82□□□□□ -0.36
LDLR-206ENST00000557958 FRMD6-AS1P0C7T7 363 aa12.82□□□□□ -0.36
LDLR-206ENST00000557958 HILS1P60008 231 aa12.82□□□□□ -0.36
LDLR-206ENST00000557958 SRSF2Q01130 221 aaKnown RBP12.82□□□□□ -0.36
LDLR-206ENST00000557958 Q6ZSV7 163 aa12.82□□□□□ -0.36
LDLR-206ENST00000557958 ZNF738Q8NE65 137 aa12.82□□□□□ -0.36
LDLR-206ENST00000557958 CUBNO60494 3623 aa12.82□□□□□ -0.36
LDLR-206ENST00000557958 ANK3Q12955 4377 aaKnown RBP12.81□□□□□ -0.36
LDLR-206ENST00000557958 PRB4P10163 310 aaPredicted RBP12.81□□□□□ -0.36
LDLR-206ENST00000557958 CRIP1P50238 77 aa12.81□□□□□ -0.36
LDLR-206ENST00000557958 ZNF138P52744 262 aa12.81□□□□□ -0.36
LDLR-206ENST00000557958 PAFAH1B2P68402 229 aa12.81□□□□□ -0.36
LDLR-206ENST00000557958 TMEM256Q8N2U0 113 aa12.81□□□□□ -0.36
LDLR-206ENST00000557958 ASCL2Q99929 193 aa12.81□□□□□ -0.36
LDLR-206ENST00000557958 NAGKQ9UJ70 344 aa12.81□□□□□ -0.36
LDLR-206ENST00000557958 PRAC2D3DTV9 90 aa12.8□□□□□ -0.36
LDLR-206ENST00000557958 OVOL1O14753 267 aa12.8□□□□□ -0.36
LDLR-206ENST00000557958 CAMPP49913 170 aa12.8□□□□□ -0.36
LDLR-206ENST00000557958 Q0VG73 95 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms