RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 H3BNG1 76 aa7.68□□□□□ -1.18
CCDC88C-213ENST00000557455 M0R3E3 92 aa7.68□□□□□ -1.18
CCDC88C-213ENST00000557455 DAZ2Q13117 558 aaKnown RBP7.68□□□□□ -1.18
CCDC88C-213ENST00000557455 ESRGQ1W209 222 aa7.68□□□□□ -1.18
CCDC88C-213ENST00000557455 Q6ZTI0 123 aa7.68□□□□□ -1.18
CCDC88C-213ENST00000557455 TMEM252Q8N6L7 170 aa7.68□□□□□ -1.18
CCDC88C-213ENST00000557455 MARVELD1Q9BSK0 173 aa7.68□□□□□ -1.18
CCDC88C-213ENST00000557455 UPK3BQ9BT76 320 aa7.68□□□□□ -1.18
CCDC88C-213ENST00000557455 KRTAP4-5Q9BYR2 181 aa7.68□□□□□ -1.18
CCDC88C-213ENST00000557455 TMPRSS5Q9H3S3 457 aa7.68□□□□□ -1.18
CCDC88C-213ENST00000557455 TIMM9Q9Y5J7 89 aa7.68□□□□□ -1.18
CCDC88C-213ENST00000557455 DNAH5Q8TE73 4624 aa7.67□□□□□ -1.18
CCDC88C-213ENST00000557455 TRGV2A0A075B6R0 118 aa7.67□□□□□ -1.18
CCDC88C-213ENST00000557455 C7orf71A4D174 169 aa7.67□□□□□ -1.18
CCDC88C-213ENST00000557455 CDK2AP2O75956 126 aa7.67□□□□□ -1.18
CCDC88C-213ENST00000557455 H2AFB2P0C5Z0 115 aa7.67□□□□□ -1.18
CCDC88C-213ENST00000557455 HIST1H1EP10412 219 aaKnown RBP7.67□□□□□ -1.18
CCDC88C-213ENST00000557455 FGF7P21781 194 aa7.67□□□□□ -1.18
CCDC88C-213ENST00000557455 ERCC8Q13216 396 aa7.67□□□□□ -1.18
CCDC88C-213ENST00000557455 RAB32Q13637 225 aa7.67□□□□□ -1.18
CCDC88C-213ENST00000557455 ATP6V1FQ16864 119 aa7.67□□□□□ -1.18
CCDC88C-213ENST00000557455 ZNF680Q8NEM1 530 aa7.67□□□□□ -1.18
CCDC88C-213ENST00000557455 LINC00477Q96M19 166 aa7.67□□□□□ -1.18
CCDC88C-213ENST00000557455 KRTAP1-5Q9BYS1 174 aa7.67□□□□□ -1.18
CCDC88C-213ENST00000557455 Q9H3A6 140 aa7.67□□□□□ -1.18
CCDC88C-213ENST00000557455 GSN-AS1Q9NRJ2 163 aa7.67□□□□□ -1.18
CCDC88C-213ENST00000557455 TMEM14CQ9P0S9 112 aa7.67□□□□□ -1.18
CCDC88C-213ENST00000557455 PRELID1Q9Y255 219 aa7.67□□□□□ -1.18
CCDC88C-213ENST00000557455 A0A1W2PPQ1 181 aa7.66□□□□□ -1.18
CCDC88C-213ENST00000557455 KLLNB2CW77 178 aa7.66□□□□□ -1.18
CCDC88C-213ENST00000557455 MPDU1O75352 247 aa7.66□□□□□ -1.18
CCDC88C-213ENST00000557455 NDUFB4O95168 129 aa7.66□□□□□ -1.18
CCDC88C-213ENST00000557455 PYYP10082 97 aa7.66□□□□□ -1.18
CCDC88C-213ENST00000557455 PDE6HQ13956 83 aa7.66□□□□□ -1.18
CCDC88C-213ENST00000557455 SPATA12Q7Z6I5 190 aa7.66□□□□□ -1.18
CCDC88C-213ENST00000557455 EXOC3-AS1Q8N2X6 119 aa7.66□□□□□ -1.18
CCDC88C-213ENST00000557455 EIF4E3Q8N5X7 224 aaKnown RBP7.66□□□□□ -1.18
CCDC88C-213ENST00000557455 BLNKQ8WV28 456 aa7.66□□□□□ -1.18
CCDC88C-213ENST00000557455 AGPAT4-IT1Q9H0P7 198 aa7.66□□□□□ -1.18
CCDC88C-213ENST00000557455 AAMDCQ9H7C9 122 aa7.66□□□□□ -1.18
CCDC88C-213ENST00000557455 GPN1Q9HCN4 374 aaPredicted RBP7.66□□□□□ -1.18
CCDC88C-213ENST00000557455 MRPS16Q9Y3D3 137 aaKnown RBP7.66□□□□□ -1.18
CCDC88C-213ENST00000557455 ALG5Q9Y673 324 aa7.66□□□□□ -1.18
CCDC88C-213ENST00000557455 TRGV1A0A0A0MS02 117 aa7.65□□□□□ -1.18
CCDC88C-213ENST00000557455 ZNF324O75467 553 aaPredicted RBP7.65□□□□□ -1.18
CCDC88C-213ENST00000557455 GPX1P07203 203 aa7.65□□□□□ -1.18
CCDC88C-213ENST00000557455 RNASE4P34096 147 aaKnown RBP7.65□□□□□ -1.18
CCDC88C-213ENST00000557455 CD300CQ08708 224 aa7.65□□□□□ -1.18
CCDC88C-213ENST00000557455 IL15RAQ13261 267 aa7.65□□□□□ -1.18
CCDC88C-213ENST00000557455 BTN1A1Q13410 526 aa7.65□□□□□ -1.18
CCDC88C-213ENST00000557455 ANXA2RQ3ZCQ2 193 aa7.65□□□□□ -1.18
CCDC88C-213ENST00000557455 GCSAMLQ5JQS6 135 aa7.65□□□□□ -1.18
CCDC88C-213ENST00000557455 C9orf47Q6ZRZ4 202 aa7.65□□□□□ -1.18
CCDC88C-213ENST00000557455 MAPKAPK5-AS1Q8N8E1 139 aa7.65□□□□□ -1.18
CCDC88C-213ENST00000557455 C11orf72Q8NBR9 251 aa7.65□□□□□ -1.18
CCDC88C-213ENST00000557455 FAM19A4Q96LR4 140 aa7.65□□□□□ -1.18
CCDC88C-213ENST00000557455 C18orf15Q96N68 181 aa7.65□□□□□ -1.18
CCDC88C-213ENST00000557455 LINC00467Q9BRT7 94 aa7.65□□□□□ -1.18
CCDC88C-213ENST00000557455 NPCDR1Q9BY65 106 aa7.65□□□□□ -1.18
CCDC88C-213ENST00000557455 FUT9Q9Y231 359 aa7.65□□□□□ -1.18
CCDC88C-213ENST00000557455 APOBP04114 4563 aaKnown RBP7.65□□□□□ -1.19
CCDC88C-213ENST00000557455 A0A096LPF7 62 aa7.64□□□□□ -1.19
CCDC88C-213ENST00000557455 PRAF2O60831 178 aa7.64□□□□□ -1.19
CCDC88C-213ENST00000557455 BTF3P20290 206 aaKnown RBP7.64□□□□□ -1.19
CCDC88C-213ENST00000557455 ICAM4Q14773 271 aa7.64□□□□□ -1.19
CCDC88C-213ENST00000557455 TMEM78Q5T7P6 136 aa7.64□□□□□ -1.19
CCDC88C-213ENST00000557455 FAM122CQ6P4D5 195 aa7.64□□□□□ -1.19
CCDC88C-213ENST00000557455 VSIG2Q96IQ7 327 aa7.64□□□□□ -1.19
CCDC88C-213ENST00000557455 SLC25A2Q9BXI2 301 aa7.64□□□□□ -1.19
CCDC88C-213ENST00000557455 KLF12Q9Y4X4 402 aa7.64□□□□□ -1.19
CCDC88C-213ENST00000557455 IGKV2-40A0A087WW87 121 aaPredicted RBP7.63□□□□□ -1.19
CCDC88C-213ENST00000557455 RGS13O14921 159 aa7.63□□□□□ -1.19
CCDC88C-213ENST00000557455 SPINK4O60575 86 aa7.63□□□□□ -1.19
CCDC88C-213ENST00000557455 IGKV2D-40P01614 121 aaPredicted RBP7.63□□□□□ -1.19
CCDC88C-213ENST00000557455 NMBP08949 121 aa7.63□□□□□ -1.19
CCDC88C-213ENST00000557455 NBEAP1P0C6P0 100 aa7.63□□□□□ -1.19
CCDC88C-213ENST00000557455 CRISP2P16562 243 aa7.63□□□□□ -1.19
CCDC88C-213ENST00000557455 TCL1AP56279 114 aa7.63□□□□□ -1.19
CCDC88C-213ENST00000557455 NHLH2Q02577 135 aa7.63□□□□□ -1.19
CCDC88C-213ENST00000557455 IBA57Q5T440 356 aaKnown RBP7.63□□□□□ -1.19
CCDC88C-213ENST00000557455 OR5C1Q8NGR4 320 aa7.63□□□□□ -1.19
CCDC88C-213ENST00000557455 THAP6Q8TBB0 222 aa7.63□□□□□ -1.19
CCDC88C-213ENST00000557455 VGLL1Q99990 258 aa7.63□□□□□ -1.19
CCDC88C-213ENST00000557455 OR51M1Q9H341 326 aa7.63□□□□□ -1.19
CCDC88C-213ENST00000557455 IGHV1OR15-1A0A075B7D0 117 aa7.62□□□□□ -1.19
CCDC88C-213ENST00000557455 E5RGE8 158 aa7.62□□□□□ -1.19
CCDC88C-213ENST00000557455 SIVA1O15304 175 aa7.62□□□□□ -1.19
CCDC88C-213ENST00000557455 PAX4O43316 350 aa7.62□□□□□ -1.19
CCDC88C-213ENST00000557455 ZFP69Q49AA0 526 aa7.62□□□□□ -1.19
CCDC88C-213ENST00000557455 MIR17HGQ75NE6 70 aa7.62□□□□□ -1.19
CCDC88C-213ENST00000557455 ST6GAL2Q96JF0 529 aa7.62□□□□□ -1.19
CCDC88C-213ENST00000557455 FAM167A-AS1Q96KT0 104 aa7.62□□□□□ -1.19
CCDC88C-213ENST00000557455 ARPC5LQ9BPX5 153 aa7.62□□□□□ -1.19
CCDC88C-213ENST00000557455 SLC25A31Q9H0C2 315 aa7.62□□□□□ -1.19
CCDC88C-213ENST00000557455 MED28Q9H204 178 aa7.62□□□□□ -1.19
CCDC88C-213ENST00000557455 ZNF492Q9P255 531 aa7.62□□□□□ -1.19
CCDC88C-213ENST00000557455 TP53TG3Q9ULZ0 132 aa7.62□□□□□ -1.19
CCDC88C-213ENST00000557455 ICOSQ9Y6W8 199 aa7.62□□□□□ -1.19
CCDC88C-213ENST00000557455 SIX6O95475 246 aa7.61□□□□□ -1.19
CCDC88C-213ENST00000557455 IGHV3-53P01767 116 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms