RNA–Protein interactions for RNA: ENST00000557358.1

VPS33B-206, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-206ENST00000557358 IFITM2Q01629 132 aa9.94□□□□□ -0.82
VPS33B-206ENST00000557358 Q6ZTC4 211 aa9.94□□□□□ -0.82
VPS33B-206ENST00000557358 CCDC28AQ8IWP9 274 aa9.94□□□□□ -0.82
VPS33B-206ENST00000557358 RPP25LQ8N5L8 163 aaKnown RBP9.94□□□□□ -0.82
VPS33B-206ENST00000557358 FAM213BQ8TBF2 198 aa9.94□□□□□ -0.82
VPS33B-206ENST00000557358 RNF141Q8WVD5 230 aa9.94□□□□□ -0.82
VPS33B-206ENST00000557358 ODF3Q96PU9 254 aa9.94□□□□□ -0.82
VPS33B-206ENST00000557358 NIPSNAP3BQ9BS92 247 aa9.94□□□□□ -0.82
VPS33B-206ENST00000557358 CSMD3Q7Z407 3707 aa9.94□□□□□ -0.82
VPS33B-206ENST00000557358 H7BYZ3 331 aa9.93□□□□□ -0.82
VPS33B-206ENST00000557358 OR10J4P0C629 311 aa9.93□□□□□ -0.82
VPS33B-206ENST00000557358 HTN1P15515 57 aa9.93□□□□□ -0.82
VPS33B-206ENST00000557358 TAS2R60P59551 318 aa9.93□□□□□ -0.82
VPS33B-206ENST00000557358 ICAM4Q14773 271 aa9.93□□□□□ -0.82
VPS33B-206ENST00000557358 TMEM78Q5T7P6 136 aa9.93□□□□□ -0.82
VPS33B-206ENST00000557358 FAM222AQ5U5X8 452 aa9.93□□□□□ -0.82
VPS33B-206ENST00000557358 ZNF767PQ75MW2 155 aa9.93□□□□□ -0.82
VPS33B-206ENST00000557358 LYPD1Q8N2G4 141 aa9.93□□□□□ -0.82
VPS33B-206ENST00000557358 LINC00476Q8WZB0 136 aa9.93□□□□□ -0.82
VPS33B-206ENST00000557358 LINC00477Q96M19 166 aa9.93□□□□□ -0.82
VPS33B-206ENST00000557358 ACTR3CQ9C0K3 210 aaPredicted RBP9.93□□□□□ -0.82
VPS33B-206ENST00000557358 YTHDF2Q9Y5A9 579 aaKnown RBP9.93□□□□□ -0.82
VPS33B-206ENST00000557358 CTXND1A0A1B0GTU2 59 aa9.92□□□□□ -0.82
VPS33B-206ENST00000557358 ZNF705GA8MUZ8 300 aaPredicted RBP9.92□□□□□ -0.82
VPS33B-206ENST00000557358 CRXO43186 299 aaPredicted RBP9.92□□□□□ -0.82
VPS33B-206ENST00000557358 FHITP49789 147 aa9.92□□□□□ -0.82
VPS33B-206ENST00000557358 DAD1P61803 113 aa9.92□□□□□ -0.82
VPS33B-206ENST00000557358 C12orf74Q32Q52 190 aa9.92□□□□□ -0.82
VPS33B-206ENST00000557358 PQLC2Q6ZP29 291 aa9.92□□□□□ -0.82
VPS33B-206ENST00000557358 ZNF493Q6ZR52 646 aa9.92□□□□□ -0.82
VPS33B-206ENST00000557358 C16orf74Q96GX8 76 aa9.92□□□□□ -0.82
VPS33B-206ENST00000557358 FAM167A-AS1Q96KT0 104 aa9.92□□□□□ -0.82
VPS33B-206ENST00000557358 DKK2Q9UBU2 259 aa9.92□□□□□ -0.82
VPS33B-206ENST00000557358 CELA1Q9UNI1 258 aa9.92□□□□□ -0.82
VPS33B-206ENST00000557358 LYRM9A8MSI8 78 aa9.91□□□□□ -0.82
VPS33B-206ENST00000557358 PRAC2D3DTV9 90 aa9.91□□□□□ -0.82
VPS33B-206ENST00000557358 NPIPB6E9PJ23 425 aa9.91□□□□□ -0.82
VPS33B-206ENST00000557358 ZNF726P1Q15940 193 aa9.91□□□□□ -0.82
VPS33B-206ENST00000557358 SSX7Q7RTT5 188 aa9.91□□□□□ -0.82
VPS33B-206ENST00000557358 EXOC3-AS1Q8N2X6 119 aa9.91□□□□□ -0.82
VPS33B-206ENST00000557358 CMTM2Q8TAZ6 248 aa9.91□□□□□ -0.82
VPS33B-206ENST00000557358 RXFP4Q8TDU9 374 aa9.91□□□□□ -0.82
VPS33B-206ENST00000557358 MAP1LC3B2A6NCE7 125 aa9.9□□□□□ -0.82
VPS33B-206ENST00000557358 J3KRW8 73 aa9.9□□□□□ -0.82
VPS33B-206ENST00000557358 M0R3E3 92 aa9.9□□□□□ -0.82
VPS33B-206ENST00000557358 EIF3GO75821 320 aaKnown RBP eCLIP9.9□□□□□ -0.82
VPS33B-206ENST00000557358 NDUFB4O95168 129 aa9.9□□□□□ -0.82
VPS33B-206ENST00000557358 SLC25A5P05141 298 aaKnown RBP9.9□□□□□ -0.82
VPS33B-206ENST00000557358 RANP62826 216 aaKnown RBP9.9□□□□□ -0.82
VPS33B-206ENST00000557358 BLOC1S1P78537 153 aa9.9□□□□□ -0.82
VPS33B-206ENST00000557358 LGALS9CQ6DKI2 356 aa9.9□□□□□ -0.82
VPS33B-206ENST00000557358 RAB24Q969Q5 203 aa9.9□□□□□ -0.82
VPS33B-206ENST00000557358 FXYD5Q96DB9 178 aa9.9□□□□□ -0.82
VPS33B-206ENST00000557358 NDUFAF3Q9BU61 184 aa9.9□□□□□ -0.82
VPS33B-206ENST00000557358 MAP1LC3BQ9GZQ8 125 aa9.9□□□□□ -0.82
VPS33B-206ENST00000557358 IGHV4-4A0A075B6R2 117 aa9.89□□□□□ -0.83
VPS33B-206ENST00000557358 RGS13O14921 159 aa9.89□□□□□ -0.83
VPS33B-206ENST00000557358 HMGB3O15347 200 aaKnown RBP9.89□□□□□ -0.83
VPS33B-206ENST00000557358 H2AFB1P0C5Y9 115 aa9.89□□□□□ -0.83
VPS33B-206ENST00000557358 STAG3L2P0CL84 134 aa9.89□□□□□ -0.83
VPS33B-206ENST00000557358 STAG3L3P0CL85 134 aa9.89□□□□□ -0.83
VPS33B-206ENST00000557358 CT45A10P0DMU9 189 aa9.89□□□□□ -0.83
VPS33B-206ENST00000557358 PRB4P10163 310 aaPredicted RBP9.89□□□□□ -0.83
VPS33B-206ENST00000557358 TMEM263Q8WUH6 116 aaKnown RBP9.89□□□□□ -0.83
VPS33B-206ENST00000557358 FAM210BQ96KR6 192 aa9.89□□□□□ -0.83
VPS33B-206ENST00000557358 PYGO2Q9BRQ0 406 aa9.89□□□□□ -0.83
VPS33B-206ENST00000557358 Q9H3A6 140 aa9.89□□□□□ -0.83
VPS33B-206ENST00000557358 TIMM8BQ9Y5J9 83 aaPredicted RBP9.89□□□□□ -0.83
VPS33B-206ENST00000557358 C7orf71A4D174 169 aa9.88□□□□□ -0.83
VPS33B-206ENST00000557358 SNURFLB1AK76 121 aa9.88□□□□□ -0.83
VPS33B-206ENST00000557358 TEX46H3BTG2 121 aa9.88□□□□□ -0.83
VPS33B-206ENST00000557358 GPX1P07203 203 aa9.88□□□□□ -0.83
VPS33B-206ENST00000557358 NMBP08949 121 aa9.88□□□□□ -0.83
VPS33B-206ENST00000557358 HTN3P15516 51 aa9.88□□□□□ -0.83
VPS33B-206ENST00000557358 RAB14P61106 215 aa9.88□□□□□ -0.83
VPS33B-206ENST00000557358 GFI1BQ5VTD9 330 aa9.88□□□□□ -0.83
VPS33B-206ENST00000557358 C9orf47Q6ZRZ4 202 aa9.88□□□□□ -0.83
VPS33B-206ENST00000557358 SFT2D1Q8WV19 159 aa9.88□□□□□ -0.83
VPS33B-206ENST00000557358 MBD3L1Q8WWY6 194 aa9.88□□□□□ -0.83
VPS33B-206ENST00000557358 TRAV12-3A0A0B4J271 114 aa9.87□□□□□ -0.83
VPS33B-206ENST00000557358 RBAKDNA6NC62 111 aa9.87□□□□□ -0.83
VPS33B-206ENST00000557358 CXorf1O96002 111 aa9.87□□□□□ -0.83
VPS33B-206ENST00000557358 ARL14EPLP0DKL9 152 aa9.87□□□□□ -0.83
VPS33B-206ENST00000557358 ERCC8Q13216 396 aa9.87□□□□□ -0.83
VPS33B-206ENST00000557358 IQCF2Q8IXL9 164 aa9.87□□□□□ -0.83
VPS33B-206ENST00000557358 OTORQ9NRC9 128 aa9.87□□□□□ -0.83
VPS33B-206ENST00000557358 IGKV2-40A0A087WW87 121 aaPredicted RBP9.86□□□□□ -0.83
VPS33B-206ENST00000557358 TRBV7-9A0A0J9YWB2 115 aa9.86□□□□□ -0.83
VPS33B-206ENST00000557358 A0A1B0GV50 99 aa9.86□□□□□ -0.83
VPS33B-206ENST00000557358 IGKV2D-40P01614 121 aaPredicted RBP9.86□□□□□ -0.83
VPS33B-206ENST00000557358 DEFB130BP0DP73 79 aa9.86□□□□□ -0.83
VPS33B-206ENST00000557358 DEFB130AP0DP74 79 aa9.86□□□□□ -0.83
VPS33B-206ENST00000557358 ZNF138P52744 262 aa9.86□□□□□ -0.83
VPS33B-206ENST00000557358 FGF8P55075 233 aaPredicted RBP9.86□□□□□ -0.83
VPS33B-206ENST00000557358 PCNPQ8WW12 178 aaKnown RBP9.86□□□□□ -0.83
VPS33B-206ENST00000557358 ZNF503Q96F45 646 aa9.86□□□□□ -0.83
VPS33B-206ENST00000557358 AGPAT4-IT1Q9H0P7 198 aa9.86□□□□□ -0.83
VPS33B-206ENST00000557358 DYNC2H1Q8NCM8 4307 aaKnown RBP9.86□□□□□ -0.83
VPS33B-206ENST00000557358 TRAV1-1A0A0B4J248 108 aa9.85□□□□□ -0.83
VPS33B-206ENST00000557358 PGPA6NDG6 321 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms