RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 H0Y8G0 127 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 J3QKU1 62 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 ARMS2P0C7Q2 107 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 SMIM6P0DI80 62 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 C8orf86Q6ZUL3 223 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 TCEAL7Q9BRU2 100 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 C2CD3Q4AC94 2353 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 A0A096LNT2 108 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 IGF1P05019 195 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 ZNF80P51504 273 aaPredicted RBP4.55□□□□□ -1.68
SYNE2-225ENST00000557060 RNASEKQ6P5S7 137 aaKnown RBP4.55□□□□□ -1.68
SYNE2-225ENST00000557060 ZNF738Q8NE65 137 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 RNF24Q9Y225 148 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 AGRNO00468 2067 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 A0A1W2PRX2 142 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 AMTP48728 403 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 KRTDAPP60985 99 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 PSG9Q00887 426 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 WIPF2Q8TF74 440 aaPredicted RBP4.55□□□□□ -1.68
SYNE2-225ENST00000557060 TMEM18Q96B42 140 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 TXN2Q99757 166 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 SMR3AQ99954 134 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 NPFFR1Q9GZQ6 430 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 TP53TG3Q9ULZ0 132 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 CR1P17927 2039 aa4.55□□□□□ -1.68
SYNE2-225ENST00000557060 SH2D1AO60880 128 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 IGHG4P01861 327 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 PLA2G2AP14555 144 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 GATA3P23771 443 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 SYNJ2BPP57105 145 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 C18orf65Q6ZTR6 163 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 SIGLECL1Q8N7X8 197 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 RHPN1-AS1Q9BWJ2 59 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 GSN-AS1Q9NRJ2 163 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 TMEM213A2RRL7 107 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 FAM223BA6NKX1 122 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 LINC00587B1AMM8 73 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 M0QZK8 103 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 HBBP68871 147 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 SRSF2Q01130 221 aaKnown RBP4.54□□□□□ -1.68
SYNE2-225ENST00000557060 WDR73Q6P4I2 378 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 FAM223AQ8IWN6 122 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 MBD6Q96DN6 1003 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 PRR25Q96S07 402 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 GNB1LQ9BYB4 327 aa4.54□□□□□ -1.68
SYNE2-225ENST00000557060 LOC389332A0A1B0GUA5 103 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 TMEM189A5PLL7 270 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 C19orf71A6NCJ1 209 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 HLA-DQA1P01909 254 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 HIST1H1AQ02539 215 aaPredicted RBP4.53□□□□□ -1.68
SYNE2-225ENST00000557060 LOXL1Q08397 574 aaPredicted RBP4.53□□□□□ -1.68
SYNE2-225ENST00000557060 KIR3DS1Q14943 382 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 C21orf62-AS1Q17RA5 79 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 RBPMS2Q6ZRY4 209 aaKnown RBP4.53□□□□□ -1.68
SYNE2-225ENST00000557060 VPREB3Q9UKI3 123 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 ATRQ13535 2644 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 NDUFS6O75380 124 aaKnown RBP4.53□□□□□ -1.68
SYNE2-225ENST00000557060 FXYD7P58549 80 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 LINC00310P59036 64 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 FOXE3Q13461 319 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 PDE6HQ13956 83 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 FAM162BQ5T6X4 162 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 TMEM78Q5T7P6 136 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 LYZL1Q6UWQ5 148 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 FAM231DQ6ZW35 169 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 ATOH7Q8N100 152 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 LYPD1Q8N2G4 141 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 C20orf173Q96LM9 149 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 NDFIP1Q9BT67 221 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 AGPAT4-IT1Q9H0P7 198 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 MSRB1Q9NZV6 116 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 ZFP30Q9Y2G7 519 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 A0A0G2JLM5 398 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 HSBP1O75506 76 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 ZNF688P0C7X2 276 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 HTN1P15515 57 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 TWIST1Q15672 202 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 CYB5R2Q6BCY4 276 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 MCRIP2Q9BUT9 160 aaKnown RBP4.53□□□□□ -1.68
SYNE2-225ENST00000557060 PRSS22Q9GZN4 317 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 YAE1D1Q9NRH1 226 aa4.53□□□□□ -1.68
SYNE2-225ENST00000557060 PEF1Q9UBV8 284 aaKnown RBP4.53□□□□□ -1.68
SYNE2-225ENST00000557060 TRAV8-2A0A0B4J237 113 aa4.52□□□□□ -1.69
SYNE2-225ENST00000557060 A0A1B0GUT8 65 aa4.52□□□□□ -1.69
SYNE2-225ENST00000557060 SMKR1H3BMG3 65 aa4.52□□□□□ -1.69
SYNE2-225ENST00000557060 DEFB104AQ8WTQ1 72 aa4.52□□□□□ -1.69
SYNE2-225ENST00000557060 TMEM238LA0A1B0GVL6 79 aa4.52□□□□□ -1.69
SYNE2-225ENST00000557060 NCR2O95944 276 aa4.52□□□□□ -1.69
SYNE2-225ENST00000557060 MT-ND6P03923 174 aa4.52□□□□□ -1.69
SYNE2-225ENST00000557060 TDRG1Q3Y452 100 aa4.52□□□□□ -1.69
SYNE2-225ENST00000557060 C19orf54Q5BKX5 351 aa4.52□□□□□ -1.69
SYNE2-225ENST00000557060 Q6ZWC4 215 aa4.52□□□□□ -1.69
SYNE2-225ENST00000557060 AMN1Q8IY45 258 aa4.52□□□□□ -1.69
SYNE2-225ENST00000557060 C18orf32Q8TCD1 76 aa4.52□□□□□ -1.69
SYNE2-225ENST00000557060 BORCS7Q96B45 105 aa4.52□□□□□ -1.69
SYNE2-225ENST00000557060 USMG5Q96IX5 58 aa4.52□□□□□ -1.69
SYNE2-225ENST00000557060 DAZ1Q9NQZ3 744 aaKnown RBP4.52□□□□□ -1.69
SYNE2-225ENST00000557060 RNF114Q9Y508 228 aa4.52□□□□□ -1.69
SYNE2-225ENST00000557060 FAM106AQ4KMX7 169 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms