RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 LINC01587Q99440 93 aa8.29□□□□□ -1.08
CCDC88C-212ENST00000556767 VGLL1Q99990 258 aa8.29□□□□□ -1.08
CCDC88C-212ENST00000556767 PLA2G2EQ9NZK7 142 aa8.29□□□□□ -1.08
CCDC88C-212ENST00000556767 TENM3Q9P273 2699 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 A0A1B0GV50 99 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 SMIM9A6NGZ8 99 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 DIRC3C9JPN6 131 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 C3orf84H3BNL1 204 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 RBMY1A1P0DJD3 496 aaKnown RBP8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 RBMY1CP0DJD4 496 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 HTN1P15515 57 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 UBE2G2P60604 165 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 GNG5P63218 68 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 PMS2P11Q13670 270 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 KIR3DS1Q14943 382 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 RBMY1FQ15415 496 aaKnown RBP8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 RRN3P1Q2M238 152 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 C9orf47Q6ZRZ4 202 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 GOLT1AQ6ZVE7 132 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 SLC51BQ86UW2 128 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 C9orf62Q8N4C0 152 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 Q8TAT8 98 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 C11orf45Q8TAV5 145 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 SFT2D1Q8WV19 159 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 ODF3Q96PU9 254 aa8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 C11orf68Q9H3H3 251 aaKnown RBP8.28□□□□□ -1.08
CCDC88C-212ENST00000556767 TRAV12-3A0A0B4J271 114 aa8.27□□□□□ -1.09
CCDC88C-212ENST00000556767 CXorf65A6NEN9 183 aa8.27□□□□□ -1.09
CCDC88C-212ENST00000556767 ZNF705GA8MUZ8 300 aaPredicted RBP8.27□□□□□ -1.09
CCDC88C-212ENST00000556767 GPX1P07203 203 aa8.27□□□□□ -1.09
CCDC88C-212ENST00000556767 ZNF138P52744 262 aa8.27□□□□□ -1.09
CCDC88C-212ENST00000556767 NKX2-5P52952 324 aaPredicted RBP8.27□□□□□ -1.09
CCDC88C-212ENST00000556767 SUMO1P63165 101 aaKnown RBP8.27□□□□□ -1.09
CCDC88C-212ENST00000556767 GFI1BQ5VTD9 330 aa8.27□□□□□ -1.09
CCDC88C-212ENST00000556767 NEU1Q99519 415 aa8.27□□□□□ -1.09
CCDC88C-212ENST00000556767 ZNF492Q9P255 531 aa8.27□□□□□ -1.09
CCDC88C-212ENST00000556767 LOC102723971A0A1B0GUV8 181 aa8.26□□□□□ -1.09
CCDC88C-212ENST00000556767 RBAKDNA6NC62 111 aa8.26□□□□□ -1.09
CCDC88C-212ENST00000556767 IFNA7P01567 189 aa8.26□□□□□ -1.09
CCDC88C-212ENST00000556767 H2AFB1P0C5Y9 115 aa8.26□□□□□ -1.09
CCDC88C-212ENST00000556767 RNASE4P34096 147 aaKnown RBP8.26□□□□□ -1.09
CCDC88C-212ENST00000556767 NANOS2P60321 138 aaKnown RBP8.26□□□□□ -1.09
CCDC88C-212ENST00000556767 DPPA3Q6W0C5 159 aa8.26□□□□□ -1.09
CCDC88C-212ENST00000556767 TMEM256Q8N2U0 113 aa8.26□□□□□ -1.09
CCDC88C-212ENST00000556767 C5orf17Q8NAS9 161 aa8.26□□□□□ -1.09
CCDC88C-212ENST00000556767 SUN5Q8TC36 379 aa8.26□□□□□ -1.09
CCDC88C-212ENST00000556767 NIPSNAP3BQ9BS92 247 aa8.26□□□□□ -1.09
CCDC88C-212ENST00000556767 NBEAL2Q6ZNJ1 2754 aa8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 COL7A1Q02388 2944 aa8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 A0A1W2PRE2 83 aa8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 C7orf71A4D174 169 aa8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 TMEM189A5PLL7 270 aa8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 GGTLC3B5MD39 225 aa8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 H7BYZ3 331 aa8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 K7EQM0 130 aa8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 TCRAP04437 139 aa8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 PRM2P04554 102 aa8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 TAS2R60P59551 318 aa8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 BTN1A1Q13410 526 aa8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 CST9LP1Q5W188 147 aa8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 MBD3L1Q8WWY6 194 aa8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 SGK494Q96LW2 274 aa8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 C20orf144Q9BQM9 153 aa8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 EPDR1Q9UM22 224 aa8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 YTHDF2Q9Y5A9 579 aaKnown RBP8.25□□□□□ -1.09
CCDC88C-212ENST00000556767 STAB2Q8WWQ8 2551 aa8.24□□□□□ -1.09
CCDC88C-212ENST00000556767 TRAV8-1A0A0A6YYK1 113 aa8.24□□□□□ -1.09
CCDC88C-212ENST00000556767 FAM74A7A6NL05 159 aa8.24□□□□□ -1.09
CCDC88C-212ENST00000556767 CRISP2P16562 243 aa8.24□□□□□ -1.09
CCDC88C-212ENST00000556767 RAB5CP51148 216 aa8.24□□□□□ -1.09
CCDC88C-212ENST00000556767 CASC10Q5T4H9 136 aa8.24□□□□□ -1.09
CCDC88C-212ENST00000556767 ZNF767PQ75MW2 155 aa8.24□□□□□ -1.09
CCDC88C-212ENST00000556767 CCDC28AQ8IWP9 274 aa8.24□□□□□ -1.09
CCDC88C-212ENST00000556767 ARL6IP6Q8N6S5 226 aa8.24□□□□□ -1.09
CCDC88C-212ENST00000556767 FAM19A4Q96LR4 140 aa8.24□□□□□ -1.09
CCDC88C-212ENST00000556767 SERTM2A0A1B0GWG4 89 aa8.23□□□□□ -1.09
CCDC88C-212ENST00000556767 KLLNB2CW77 178 aa8.23□□□□□ -1.09
CCDC88C-212ENST00000556767 TEX46H3BTG2 121 aa8.23□□□□□ -1.09
CCDC88C-212ENST00000556767 NMBP08949 121 aa8.23□□□□□ -1.09
CCDC88C-212ENST00000556767 SPART-AS1P0CW21 52 aa8.23□□□□□ -1.09
CCDC88C-212ENST00000556767 AZU1P20160 251 aa8.23□□□□□ -1.09
CCDC88C-212ENST00000556767 SULT1A2P50226 295 aa8.23□□□□□ -1.09
CCDC88C-212ENST00000556767 ZFAND2AQ8N6M9 145 aa8.23□□□□□ -1.09
CCDC88C-212ENST00000556767 CYB561D1Q8N8Q1 229 aa8.23□□□□□ -1.09
CCDC88C-212ENST00000556767 NDFIP1Q9BT67 221 aa8.23□□□□□ -1.09
CCDC88C-212ENST00000556767 NKX6-2Q9C056 277 aaPredicted RBP8.23□□□□□ -1.09
CCDC88C-212ENST00000556767 CELA1Q9UNI1 258 aa8.23□□□□□ -1.09
CCDC88C-212ENST00000556767 BOLA1Q9Y3E2 137 aa8.23□□□□□ -1.09
CCDC88C-212ENST00000556767 TRBV7-9A0A0J9YWB2 115 aa8.22□□□□□ -1.09
CCDC88C-212ENST00000556767 RGS13O14921 159 aa8.22□□□□□ -1.09
CCDC88C-212ENST00000556767 PAGE4O60829 102 aa8.22□□□□□ -1.09
CCDC88C-212ENST00000556767 PRR9Q5T870 116 aa8.22□□□□□ -1.09
CCDC88C-212ENST00000556767 FAM222AQ5U5X8 452 aa8.22□□□□□ -1.09
CCDC88C-212ENST00000556767 PRNTQ86SH4 94 aa8.22□□□□□ -1.09
CCDC88C-212ENST00000556767 PYGO2Q9BRQ0 406 aa8.22□□□□□ -1.09
CCDC88C-212ENST00000556767 ATG101Q9BSB4 218 aa8.22□□□□□ -1.09
CCDC88C-212ENST00000556767 TREM1Q9NP99 234 aa8.22□□□□□ -1.09
CCDC88C-212ENST00000556767 PSG8Q9UQ74 426 aa8.22□□□□□ -1.09
CCDC88C-212ENST00000556767 TRAV34A0A0B4J273 112 aa8.21□□□□□ -1.1
CCDC88C-212ENST00000556767 NUPR2A6NF83 97 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms