RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 EPDR1Q9UM22 224 aa8.74□□□□□ -1.01
VPS33B-204ENST00000554660 A0A1B0GV90 55 aa8.73□□□□□ -1.01
VPS33B-204ENST00000554660 ZNF705FA8MVS1 300 aaPredicted RBP8.73□□□□□ -1.01
VPS33B-204ENST00000554660 G3V318 75 aa8.73□□□□□ -1.01
VPS33B-204ENST00000554660 OVOL1O14753 267 aa8.73□□□□□ -1.01
VPS33B-204ENST00000554660 SLC25A17O43808 307 aa8.73□□□□□ -1.01
VPS33B-204ENST00000554660 HYPMO75409 117 aa8.73□□□□□ -1.01
VPS33B-204ENST00000554660 ZNF324O75467 553 aaPredicted RBP8.73□□□□□ -1.01
VPS33B-204ENST00000554660 IGF1P05019 195 aa8.73□□□□□ -1.01
VPS33B-204ENST00000554660 ZNF705DP0CH99 300 aaPredicted RBP8.73□□□□□ -1.01
VPS33B-204ENST00000554660 ZNF705BP0CI00 300 aaPredicted RBP8.73□□□□□ -1.01
VPS33B-204ENST00000554660 MGST1P10620 155 aaKnown RBP8.73□□□□□ -1.01
VPS33B-204ENST00000554660 GATA2P23769 480 aaPredicted RBP8.73□□□□□ -1.01
VPS33B-204ENST00000554660 SLURP1P55000 103 aa8.73□□□□□ -1.01
VPS33B-204ENST00000554660 UBE2G1P62253 170 aa8.73□□□□□ -1.01
VPS33B-204ENST00000554660 LINC00305Q7Z4B0 112 aa8.73□□□□□ -1.01
VPS33B-204ENST00000554660 MISP3Q96FF7 219 aa8.73□□□□□ -1.01
VPS33B-204ENST00000554660 UBE2E2Q96LR5 201 aa8.73□□□□□ -1.01
VPS33B-204ENST00000554660 TM2D3Q9BRN9 247 aa8.73□□□□□ -1.01
VPS33B-204ENST00000554660 VAMP8Q9BV40 100 aa8.73□□□□□ -1.01
VPS33B-204ENST00000554660 MLST8Q9BVC4 326 aa8.73□□□□□ -1.01
VPS33B-204ENST00000554660 F11RQ9Y624 299 aaKnown RBP8.73□□□□□ -1.01
VPS33B-204ENST00000554660 ALMS1Q8TCU4 4167 aa8.73□□□□□ -1.01
VPS33B-204ENST00000554660 A0A1B0GXF2 115 aa8.72□□□□□ -1.01
VPS33B-204ENST00000554660 A8MWL6 223 aa8.72□□□□□ -1.01
VPS33B-204ENST00000554660 E7EUB6 86 aa8.72□□□□□ -1.01
VPS33B-204ENST00000554660 ATP6V0E1O15342 81 aa8.72□□□□□ -1.01
VPS33B-204ENST00000554660 PMCHL1Q16048 86 aa8.72□□□□□ -1.01
VPS33B-204ENST00000554660 MLANAQ16655 118 aa8.72□□□□□ -1.01
VPS33B-204ENST00000554660 MORN5Q5VZ52 161 aa8.72□□□□□ -1.01
VPS33B-204ENST00000554660 LYPD1Q8N2G4 141 aa8.72□□□□□ -1.01
VPS33B-204ENST00000554660 ARL6IP6Q8N6S5 226 aa8.72□□□□□ -1.01
VPS33B-204ENST00000554660 ZNF491Q8N8L2 437 aa8.72□□□□□ -1.01
VPS33B-204ENST00000554660 ARPC1AQ92747 370 aa8.72□□□□□ -1.01
VPS33B-204ENST00000554660 DLX4Q92988 240 aaPredicted RBP8.72□□□□□ -1.01
VPS33B-204ENST00000554660 OTORQ9NRC9 128 aa8.72□□□□□ -1.01
VPS33B-204ENST00000554660 A0A1W2PS18 150 aa8.71□□□□□ -1.02
VPS33B-204ENST00000554660 NPIPB6E9PJ23 425 aa8.71□□□□□ -1.02
VPS33B-204ENST00000554660 LTAP01374 205 aa8.71□□□□□ -1.02
VPS33B-204ENST00000554660 NBEAP1P0C6P0 100 aa8.71□□□□□ -1.02
VPS33B-204ENST00000554660 IGHV4-30-4P0DP06 118 aa8.71□□□□□ -1.02
VPS33B-204ENST00000554660 PPIFP30405 207 aaKnown RBP8.71□□□□□ -1.02
VPS33B-204ENST00000554660 AMTP48728 403 aa8.71□□□□□ -1.02
VPS33B-204ENST00000554660 MMDQ15546 238 aa8.71□□□□□ -1.02
VPS33B-204ENST00000554660 NUDT10Q8NFP7 164 aa8.71□□□□□ -1.02
VPS33B-204ENST00000554660 NUDT11Q96G61 164 aa8.71□□□□□ -1.02
VPS33B-204ENST00000554660 NEU1Q99519 415 aa8.71□□□□□ -1.02
VPS33B-204ENST00000554660 SNHG12Q9BXW3 62 aa8.71□□□□□ -1.02
VPS33B-204ENST00000554660 ZNF580Q9UK33 172 aa8.71□□□□□ -1.02
VPS33B-204ENST00000554660 TNCP24821 2201 aa8.7□□□□□ -1.02
VPS33B-204ENST00000554660 TRAV5A0A0B4J249 113 aa8.7□□□□□ -1.02
VPS33B-204ENST00000554660 C19orf71A6NCJ1 209 aa8.7□□□□□ -1.02
VPS33B-204ENST00000554660 SLC25A5P05141 298 aaKnown RBP8.7□□□□□ -1.02
VPS33B-204ENST00000554660 PYYP10082 97 aa8.7□□□□□ -1.02
VPS33B-204ENST00000554660 SRIP30626 198 aa8.7□□□□□ -1.02
VPS33B-204ENST00000554660 CTRLP40313 264 aa8.7□□□□□ -1.02
VPS33B-204ENST00000554660 FXYD3Q14802 87 aa8.7□□□□□ -1.02
VPS33B-204ENST00000554660 C10orf55Q5SWW7 151 aa8.7□□□□□ -1.02
VPS33B-204ENST00000554660 PPP1R27Q86WC6 154 aa8.7□□□□□ -1.02
VPS33B-204ENST00000554660 Q8N976 141 aa8.7□□□□□ -1.02
VPS33B-204ENST00000554660 NUP35Q8NFH5 326 aa8.7□□□□□ -1.02
VPS33B-204ENST00000554660 C18orf32Q8TCD1 76 aa8.7□□□□□ -1.02
VPS33B-204ENST00000554660 TMEM68Q96MH6 324 aa8.7□□□□□ -1.02
VPS33B-204ENST00000554660 RPP21Q9H633 154 aaKnown RBP8.7□□□□□ -1.02
VPS33B-204ENST00000554660 NRN1Q9NPD7 142 aa8.7□□□□□ -1.02
VPS33B-204ENST00000554660 HIGD1AQ9Y241 93 aa8.7□□□□□ -1.02
VPS33B-204ENST00000554660 SORL1Q92673 2214 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 IGHV4OR15-8A0A075B7B6 117 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 A0A087WW49 117 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 A0A1B0GW15 77 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 SERTM2A0A1B0GWG4 89 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 FBLL1A6NHQ2 334 aaKnown RBP8.69□□□□□ -1.02
VPS33B-204ENST00000554660 TEX22C9J3V5 150 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 DIRC3C9JPN6 131 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 EREGO14944 169 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 IGLV1-40P01703 118 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 TCRAP04437 139 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 PMCHP20382 165 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 CNTFRP26992 372 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 RAB9AP51151 201 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 MFAP2P55001 183 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 HBBP68871 147 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 SSBP2P81877 361 aaPredicted RBP8.69□□□□□ -1.02
VPS33B-204ENST00000554660 C16orf54Q6UWD8 224 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 GATD1Q8NB37 220 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 NHLRC2Q8NBF2 726 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 FBXL7Q9UJT9 491 aa8.69□□□□□ -1.02
VPS33B-204ENST00000554660 TRAV30A0A087WSZ9 112 aa8.68□□□□□ -1.02
VPS33B-204ENST00000554660 IGHV7-81A0A0B4J1V7 117 aa8.68□□□□□ -1.02
VPS33B-204ENST00000554660 TRAV41A0A0B4J266 112 aa8.68□□□□□ -1.02
VPS33B-204ENST00000554660 PGPA6NDG6 321 aa8.68□□□□□ -1.02
VPS33B-204ENST00000554660 LINC01619G3V211 115 aa8.68□□□□□ -1.02
VPS33B-204ENST00000554660 TCAPO15273 167 aa8.68□□□□□ -1.02
VPS33B-204ENST00000554660 SNRPCP09234 159 aaKnown RBP8.68□□□□□ -1.02
VPS33B-204ENST00000554660 IGLC1P0CG04 106 aa8.68□□□□□ -1.02
VPS33B-204ENST00000554660 FOXA3P55318 350 aaPredicted RBP8.68□□□□□ -1.02
VPS33B-204ENST00000554660 NDPQ00604 133 aa8.68□□□□□ -1.02
VPS33B-204ENST00000554660 GAGE1Q13065 139 aa8.68□□□□□ -1.02
VPS33B-204ENST00000554660 TNXAQ16473 311 aa8.68□□□□□ -1.02
VPS33B-204ENST00000554660 ECSCRQ19T08 205 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms