RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 BATF3Q9NR55 127 aa1.61□□□□□ -2.15
SCFD1-209ENST00000553280 MED23Q9ULK4 1368 aa1.6□□□□□ -2.15
SCFD1-209ENST00000553280 A0A096LPI6 279 aa1.6□□□□□ -2.15
SCFD1-209ENST00000553280 IGLV3-32A0A0A0MS00 114 aa1.6□□□□□ -2.15
SCFD1-209ENST00000553280 DPM2O94777 84 aa1.6□□□□□ -2.15
SCFD1-209ENST00000553280 CCDC153Q494R4 210 aa1.6□□□□□ -2.15
SCFD1-209ENST00000553280 Q5XG85 94 aa1.6□□□□□ -2.15
SCFD1-209ENST00000553280 ZCCHC23Q6ZST2 131 aa1.6□□□□□ -2.15
SCFD1-209ENST00000553280 OR51A4Q8NGJ6 313 aa1.6□□□□□ -2.15
SCFD1-209ENST00000553280 SCN3AQ9NY46 2000 aa1.6□□□□□ -2.15
SCFD1-209ENST00000553280 PRRC2BQ5JSZ5 2229 aaKnown RBP1.59□□□□□ -2.15
SCFD1-209ENST00000553280 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.59□□□□□ -2.15
SCFD1-209ENST00000553280 BORCS7-ASMTA0A0B4J1R7 106 aa1.59□□□□□ -2.15
SCFD1-209ENST00000553280 LOC105371267A0A1B0GV96 52 aa1.59□□□□□ -2.15
SCFD1-209ENST00000553280 LOC107986453A0A1B0GWG9 222 aa1.59□□□□□ -2.15
SCFD1-209ENST00000553280 PLPP5Q8NEB5 264 aa1.59□□□□□ -2.15
SCFD1-209ENST00000553280 C22orf24Q9Y442 160 aa1.59□□□□□ -2.15
SCFD1-209ENST00000553280 MCM3APO60318 1980 aa1.59□□□□□ -2.16
SCFD1-209ENST00000553280 DSPPQ9NZW4 1301 aa1.59□□□□□ -2.16
SCFD1-209ENST00000553280 OTOGLQ3ZCN5 2332 aa1.58□□□□□ -2.16
SCFD1-209ENST00000553280 KIAA1549Q9HCM3 1950 aa1.58□□□□□ -2.16
SCFD1-209ENST00000553280 SCTP09683 121 aa1.58□□□□□ -2.16
SCFD1-209ENST00000553280 SDC4P31431 198 aa1.58□□□□□ -2.16
SCFD1-209ENST00000553280 CASC2Q6XLA1 102 aa1.58□□□□□ -2.16
SCFD1-209ENST00000553280 KRTAP4-1Q9BYQ7 146 aa1.58□□□□□ -2.16
SCFD1-209ENST00000553280 FKBP11Q9NYL4 201 aa1.58□□□□□ -2.16
SCFD1-209ENST00000553280 HSPB8Q9UJY1 196 aa1.58□□□□□ -2.16
SCFD1-209ENST00000553280 TNFSF18Q9UNG2 199 aa1.58□□□□□ -2.16
SCFD1-209ENST00000553280 POLEQ07864 2286 aa1.57□□□□□ -2.16
SCFD1-209ENST00000553280 ERBINQ96RT1 1412 aa1.57□□□□□ -2.16
SCFD1-209ENST00000553280 TECTAO75443 2155 aa1.57□□□□□ -2.16
SCFD1-209ENST00000553280 PPYP01298 95 aa1.57□□□□□ -2.16
SCFD1-209ENST00000553280 IGHV3-33P01772 117 aa1.57□□□□□ -2.16
SCFD1-209ENST00000553280 KRTAP10-4P60372 401 aaPredicted RBP1.57□□□□□ -2.16
SCFD1-209ENST00000553280 LSM3P62310 102 aaKnown RBP1.57□□□□□ -2.16
SCFD1-209ENST00000553280 GLIPR1L1Q6UWM5 242 aa1.57□□□□□ -2.16
SCFD1-209ENST00000553280 NABP2Q9BQ15 211 aa1.57□□□□□ -2.16
SCFD1-209ENST00000553280 FREM3P0C091 2139 aa1.57□□□□□ -2.16
SCFD1-209ENST00000553280 FHAD1B1AJZ9 1412 aa1.57□□□□□ -2.16
SCFD1-209ENST00000553280 C3orf85A0A1B0GTC6 90 aa1.56□□□□□ -2.16
SCFD1-209ENST00000553280 JMJD7-PLA2G4BH0Y9G9 81 aa1.56□□□□□ -2.16
SCFD1-209ENST00000553280 UQCRQO14949 82 aa1.56□□□□□ -2.16
SCFD1-209ENST00000553280 KLF7O75840 302 aaPredicted RBP1.56□□□□□ -2.16
SCFD1-209ENST00000553280 TNFSF15O95150 251 aa1.56□□□□□ -2.16
SCFD1-209ENST00000553280 HBDP02042 147 aa1.56□□□□□ -2.16
SCFD1-209ENST00000553280 CCL4P13236 92 aa1.56□□□□□ -2.16
SCFD1-209ENST00000553280 GTF2A1P52655 376 aaPredicted RBP1.56□□□□□ -2.16
SCFD1-209ENST00000553280 DEFB115Q30KQ5 88 aa1.56□□□□□ -2.16
SCFD1-209ENST00000553280 TCTE3Q8IZS6 198 aa1.56□□□□□ -2.16
SCFD1-209ENST00000553280 HELZ2Q9BYK8 2649 aaKnown RBP1.56□□□□□ -2.16
SCFD1-209ENST00000553280 ARHGEF10O15013 1369 aa1.56□□□□□ -2.16
SCFD1-209ENST00000553280 FER1L6Q2WGJ9 1857 aa1.55□□□□□ -2.16
SCFD1-209ENST00000553280 TMEM189A5PLL7 270 aa1.55□□□□□ -2.16
SCFD1-209ENST00000553280 C9JAW5 83 aa1.55□□□□□ -2.16
SCFD1-209ENST00000553280 ARPC5O15511 151 aa1.55□□□□□ -2.16
SCFD1-209ENST00000553280 DBIP07108 87 aaKnown RBP1.55□□□□□ -2.16
SCFD1-209ENST00000553280 SLC25A4P12235 298 aa1.55□□□□□ -2.16
SCFD1-209ENST00000553280 LINC00299Q6ZSB3 139 aa1.55□□□□□ -2.16
SCFD1-209ENST00000553280 CIB3Q96Q77 187 aaPredicted RBP1.55□□□□□ -2.16
SCFD1-209ENST00000553280 HIGD1AQ9Y241 93 aa1.55□□□□□ -2.16
SCFD1-209ENST00000553280 USP54Q70EL1 1684 aa1.55□□□□□ -2.16
SCFD1-209ENST00000553280 ALPK3Q96L96 1907 aa1.54□□□□□ -2.16
SCFD1-209ENST00000553280 A0A1B0GW64 132 aa1.54□□□□□ -2.16
SCFD1-209ENST00000553280 PAEPP09466 180 aa1.54□□□□□ -2.16
SCFD1-209ENST00000553280 CMPK1P30085 196 aa1.54□□□□□ -2.16
SCFD1-209ENST00000553280 BLCAPP62952 87 aa1.54□□□□□ -2.16
SCFD1-209ENST00000553280 PSPHP78330 225 aa1.54□□□□□ -2.16
SCFD1-209ENST00000553280 MORN2Q502X0 79 aa1.54□□□□□ -2.16
SCFD1-209ENST00000553280 MPC1Q9Y5U8 109 aa1.54□□□□□ -2.16
SCFD1-209ENST00000553280 COL6A6A6NMZ7 2263 aa1.54□□□□□ -2.16
SCFD1-209ENST00000553280 E9PCH4 1651 aa1.53□□□□□ -2.16
SCFD1-209ENST00000553280 OR2H2O95918 312 aa1.53□□□□□ -2.16
SCFD1-209ENST00000553280 COL1A1P02452 1464 aaPredicted RBP1.53□□□□□ -2.16
SCFD1-209ENST00000553280 MT-ND4LP03901 98 aa1.53□□□□□ -2.16
SCFD1-209ENST00000553280 TCRAP04437 139 aa1.53□□□□□ -2.16
SCFD1-209ENST00000553280 SLC25A5P05141 298 aaKnown RBP1.53□□□□□ -2.16
SCFD1-209ENST00000553280 ETV6P41212 452 aa1.53□□□□□ -2.16
SCFD1-209ENST00000553280 HSD17B12Q53GQ0 312 aa1.53□□□□□ -2.16
SCFD1-209ENST00000553280 XIRP1Q702N8 1843 aaKnown RBP1.53□□□□□ -2.16
SCFD1-209ENST00000553280 AP1S3Q96PC3 154 aa1.53□□□□□ -2.16
SCFD1-209ENST00000553280 AMELYQ99218 206 aa1.53□□□□□ -2.16
SCFD1-209ENST00000553280 GSKIPQ9P0R6 139 aa1.53□□□□□ -2.16
SCFD1-209ENST00000553280 HEATR1Q9H583 2144 aaKnown RBP1.52□□□□□ -2.17
SCFD1-209ENST00000553280 PEAK1Q9H792 1746 aa1.52□□□□□ -2.17
SCFD1-209ENST00000553280 FGD6Q6ZV73 1430 aa1.52□□□□□ -2.17
SCFD1-209ENST00000553280 NEDD8Q15843 81 aa1.52□□□□□ -2.17
SCFD1-209ENST00000553280 CCSMST1Q4G0I0 132 aa1.52□□□□□ -2.17
SCFD1-209ENST00000553280 IZUMO2Q6UXV1 221 aa1.52□□□□□ -2.17
SCFD1-209ENST00000553280 WFDC10AQ9H1F0 79 aa1.52□□□□□ -2.17
SCFD1-209ENST00000553280 TNRC6AQ8NDV7 1962 aaKnown RBP1.52□□□□□ -2.17
SCFD1-209ENST00000553280 SIP14410 1827 aa1.52□□□□□ -2.17
SCFD1-209ENST00000553280 QRFPP83859 136 aa1.51□□□□□ -2.17
SCFD1-209ENST00000553280 ASB16-AS1Q495Z4 193 aa1.51□□□□□ -2.17
SCFD1-209ENST00000553280 LIMD2Q9BT23 127 aa1.51□□□□□ -2.17
SCFD1-209ENST00000553280 CALML5Q9NZT1 146 aa1.51□□□□□ -2.17
SCFD1-209ENST00000553280 PHRF1Q9P1Y6 1649 aaKnown RBP1.51□□□□□ -2.17
SCFD1-209ENST00000553280 UNC13CQ8NB66 2214 aa1.5□□□□□ -2.17
SCFD1-209ENST00000553280 A0A0J9YY99 117 aa1.5□□□□□ -2.17
SCFD1-209ENST00000553280 IFITM5A6NNB3 132 aa1.5□□□□□ -2.17
SCFD1-209ENST00000553280 IGLV3-1P01715 115 aa1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms