RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 IGHV3-33P01772 117 aa0.89□□□□□ -2.27
VPS29-205ENST00000548539 FXYD4P59646 89 aa0.89□□□□□ -2.27
VPS29-205ENST00000548539 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.89□□□□□ -2.27
VPS29-205ENST00000548539 CCDC115Q96NT0 180 aa0.89□□□□□ -2.27
VPS29-205ENST00000548539 MRPL40Q9NQ50 206 aaKnown RBP0.89□□□□□ -2.27
VPS29-205ENST00000548539 HSPB8Q9UJY1 196 aa0.89□□□□□ -2.27
VPS29-205ENST00000548539 LAMA4Q16363 1823 aa0.89□□□□□ -2.27
VPS29-205ENST00000548539 ERBINQ96RT1 1412 aa0.89□□□□□ -2.27
VPS29-205ENST00000548539 EML5Q05BV3 1969 aa0.88□□□□□ -2.27
VPS29-205ENST00000548539 PTPRFP10586 1907 aa0.88□□□□□ -2.27
VPS29-205ENST00000548539 A0A1W2PPM0 123 aa0.88□□□□□ -2.27
VPS29-205ENST00000548539 M0QZK8 103 aa0.88□□□□□ -2.27
VPS29-205ENST00000548539 FOXA3P55318 350 aaPredicted RBP0.88□□□□□ -2.27
VPS29-205ENST00000548539 C5orf17Q8NAS9 161 aa0.88□□□□□ -2.27
VPS29-205ENST00000548539 OR9Q1Q8NGQ5 310 aa0.88□□□□□ -2.27
VPS29-205ENST00000548539 NABP2Q9BQ15 211 aa0.88□□□□□ -2.27
VPS29-205ENST00000548539 DDA1Q9BW61 102 aa0.88□□□□□ -2.27
VPS29-205ENST00000548539 NDUFAF1Q9Y375 327 aa0.88□□□□□ -2.27
VPS29-205ENST00000548539 DLC1Q96QB1 1528 aa0.88□□□□□ -2.27
VPS29-205ENST00000548539 LOC107984640A0A0U1RRK4 108 aa0.87□□□□□ -2.27
VPS29-205ENST00000548539 NUPR2A6NF83 97 aa0.87□□□□□ -2.27
VPS29-205ENST00000548539 CRYGSP22914 178 aa0.87□□□□□ -2.27
VPS29-205ENST00000548539 RPS3P23396 243 aaKnown RBP eCLIP0.87□□□□□ -2.274e-6■■■■□ 22.8
VPS29-205ENST00000548539 B2MP61769 119 aa0.87□□□□□ -2.27
VPS29-205ENST00000548539 LINC00575Q6W349 94 aa0.87□□□□□ -2.27
VPS29-205ENST00000548539 TMEM35BQ8NCS4 154 aa0.87□□□□□ -2.27
VPS29-205ENST00000548539 BRK1Q8WUW1 75 aa0.87□□□□□ -2.27
VPS29-205ENST00000548539 CBLN4Q9NTU7 201 aa0.87□□□□□ -2.27
VPS29-205ENST00000548539 BOKQ9UMX3 212 aaPredicted RBP0.87□□□□□ -2.27
VPS29-205ENST00000548539 BCL9O00512 1426 aa0.87□□□□□ -2.27
VPS29-205ENST00000548539 TOMM20LQ6UXN7 152 aa0.86□□□□□ -2.27
VPS29-205ENST00000548539 LINC00299Q6ZSB3 139 aa0.86□□□□□ -2.27
VPS29-205ENST00000548539 Q86TA4 180 aa0.86□□□□□ -2.27
VPS29-205ENST00000548539 MORN4Q8NDC4 146 aa0.86□□□□□ -2.27
VPS29-205ENST00000548539 TCOF1Q13428 1488 aaKnown RBP0.86□□□□□ -2.27
VPS29-205ENST00000548539 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.85□□□□□ -2.27
VPS29-205ENST00000548539 TRBV7-6A0A0J9YX20 115 aa0.85□□□□□ -2.27
VPS29-205ENST00000548539 GNG14A0A1W2PPG7 69 aa0.85□□□□□ -2.27
VPS29-205ENST00000548539 PRORSD1PA6NEY8 169 aa0.85□□□□□ -2.27
VPS29-205ENST00000548539 ZNF727A8MUV8 499 aa0.85□□□□□ -2.27
VPS29-205ENST00000548539 TSTD3H0UI37 97 aa0.85□□□□□ -2.27
VPS29-205ENST00000548539 SAA1P0DJI8 122 aaPredicted RBP0.85□□□□□ -2.27
VPS29-205ENST00000548539 SLC25A4P12235 298 aa0.85□□□□□ -2.27
VPS29-205ENST00000548539 RPL37AP61513 92 aaKnown RBP0.85□□□□□ -2.27
VPS29-205ENST00000548539 FAM135BQ49AJ0 1406 aa0.85□□□□□ -2.27
VPS29-205ENST00000548539 OR51A4Q8NGJ6 313 aa0.85□□□□□ -2.27
VPS29-205ENST00000548539 CIB3Q96Q77 187 aaPredicted RBP0.85□□□□□ -2.27
VPS29-205ENST00000548539 LPAR5Q9H1C0 372 aa0.85□□□□□ -2.27
VPS29-205ENST00000548539 UNC13CQ8NB66 2214 aa0.85□□□□□ -2.27
VPS29-205ENST00000548539 A0A0J9YY99 117 aa0.84□□□□□ -2.27
VPS29-205ENST00000548539 LOC107986453A0A1B0GWG9 222 aa0.84□□□□□ -2.27
VPS29-205ENST00000548539 FREM3P0C091 2139 aa0.84□□□□□ -2.27
VPS29-205ENST00000548539 BLCAPP62952 87 aa0.84□□□□□ -2.27
VPS29-205ENST00000548539 SKA2Q8WVK7 121 aaPredicted RBP0.84□□□□□ -2.27
VPS29-205ENST00000548539 ZCCHC11Q5TAX3 1644 aaKnown RBP0.84□□□□□ -2.28
VPS29-205ENST00000548539 TRBV30A0A0K0K1B3 111 aa0.83□□□□□ -2.28
VPS29-205ENST00000548539 BBIP1A8MTZ0 92 aa0.83□□□□□ -2.28
VPS29-205ENST00000548539 PDE6GP18545 87 aa0.83□□□□□ -2.28
VPS29-205ENST00000548539 SRP9P49458 86 aaKnown RBP0.83□□□□□ -2.28
VPS29-205ENST00000548539 CSAG1Q6PB30 78 aa0.83□□□□□ -2.28
VPS29-205ENST00000548539 Q6ZQY7 126 aa0.83□□□□□ -2.28
VPS29-205ENST00000548539 TMEM229BQ8NBD8 167 aa0.83□□□□□ -2.28
VPS29-205ENST00000548539 AP1S3Q96PC3 154 aa0.83□□□□□ -2.28
VPS29-205ENST00000548539 A2MP01023 1474 aa0.83□□□□□ -2.28
VPS29-205ENST00000548539 ANKRD31Q8N7Z5 1873 aa0.83□□□□□ -2.28
VPS29-205ENST00000548539 NUP210Q8TEM1 1887 aaPredicted RBP0.83□□□□□ -2.28
VPS29-205ENST00000548539 FGD6Q6ZV73 1430 aa0.82□□□□□ -2.28
VPS29-205ENST00000548539 SNRNP200O75643 2136 aaKnown RBP0.82□□□□□ -2.28
VPS29-205ENST00000548539 SULT1C4O75897 302 aa0.82□□□□□ -2.28
VPS29-205ENST00000548539 RPL22P35268 128 aaKnown RBP0.82□□□□□ -2.28
VPS29-205ENST00000548539 GINS2Q9Y248 185 aa0.82□□□□□ -2.28
VPS29-205ENST00000548539 CHD3Q12873 2000 aaKnown RBP0.82□□□□□ -2.28
VPS29-205ENST00000548539 MYO18AQ92614 2054 aaKnown RBP0.82□□□□□ -2.28
VPS29-205ENST00000548539 TET1Q8NFU7 2136 aa0.82□□□□□ -2.28
VPS29-205ENST00000548539 ARL5CA6NH57 179 aa0.81□□□□□ -2.28
VPS29-205ENST00000548539 EDF1O60869 148 aaKnown RBP0.81□□□□□ -2.28
VPS29-205ENST00000548539 HBDP02042 147 aa0.81□□□□□ -2.28
VPS29-205ENST00000548539 PRB4P10163 310 aaPredicted RBP0.81□□□□□ -2.28
VPS29-205ENST00000548539 GTF2A1P52655 376 aaPredicted RBP0.81□□□□□ -2.28
VPS29-205ENST00000548539 SNRPD3P62318 126 aaKnown RBP0.81□□□□□ -2.28
VPS29-205ENST00000548539 QRFPP83859 136 aa0.81□□□□□ -2.28
VPS29-205ENST00000548539 IZUMO2Q6UXV1 221 aa0.81□□□□□ -2.28
VPS29-205ENST00000548539 C3orf62Q6ZUJ4 267 aa0.81□□□□□ -2.28
VPS29-205ENST00000548539 TCTEX1D1Q8N7M0 179 aa0.81□□□□□ -2.28
VPS29-205ENST00000548539 NAT14Q8WUY8 206 aa0.81□□□□□ -2.28
VPS29-205ENST00000548539 CCL19Q99731 98 aa0.81□□□□□ -2.28
VPS29-205ENST00000548539 HSPB11Q9Y547 144 aa0.81□□□□□ -2.28
VPS29-205ENST00000548539 MPC1Q9Y5U8 109 aa0.81□□□□□ -2.28
VPS29-205ENST00000548539 CITO14578 2027 aa0.81□□□□□ -2.28
VPS29-205ENST00000548539 A0A1W2PPB8 328 aa0.8□□□□□ -2.28
VPS29-205ENST00000548539 A0A1W2PRS3 328 aa0.8□□□□□ -2.28
VPS29-205ENST00000548539 KIR3DP1A8MWS1 328 aa0.8□□□□□ -2.28
VPS29-205ENST00000548539 J3KT08 172 aa0.8□□□□□ -2.28
VPS29-205ENST00000548539 CDC42EP2O14613 210 aa0.8□□□□□ -2.28
VPS29-205ENST00000548539 NBEAP1P0C6P0 100 aa0.8□□□□□ -2.28
VPS29-205ENST00000548539 TAC4Q86UU9 113 aa0.8□□□□□ -2.28
VPS29-205ENST00000548539 OR5A2Q8NGI9 324 aa0.8□□□□□ -2.28
VPS29-205ENST00000548539 IGHV3-30P01768 117 aa0.79□□□□□ -2.28
VPS29-205ENST00000548539 TCRAP04437 139 aa0.79□□□□□ -2.28
VPS29-205ENST00000548539 SLC25A5P05141 298 aaKnown RBP0.79□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms