RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 H3BUT2 72 aa12.39□□□□□ -0.43
CUX1-211ENST00000546411 IL17RELQ6ZVW7 336 aa12.39□□□□□ -0.43
CUX1-211ENST00000546411 C14orf178Q8N769 122 aaPredicted RBP12.39□□□□□ -0.43
CUX1-211ENST00000546411 SPRY2O43597 315 aa12.38□□□□□ -0.43
CUX1-211ENST00000546411 EYSQ5T1H1 3165 aa12.38□□□□□ -0.43
CUX1-211ENST00000546411 ATP5LO75964 103 aa12.38□□□□□ -0.43
CUX1-211ENST00000546411 EIF4EBP1Q13541 118 aaPredicted RBP12.38□□□□□ -0.43
CUX1-211ENST00000546411 ZNF503Q96F45 646 aa12.38□□□□□ -0.43
CUX1-211ENST00000546411 C2orf88Q9BSF0 95 aa12.38□□□□□ -0.43
CUX1-211ENST00000546411 K7ERU9 68 aa12.38□□□□□ -0.43
CUX1-211ENST00000546411 FAM231DQ6ZW35 169 aa12.38□□□□□ -0.43
CUX1-211ENST00000546411 MTORP42345 2549 aa12.38□□□□□ -0.43
CUX1-211ENST00000546411 K7EIM0 57 aa12.38□□□□□ -0.43
CUX1-211ENST00000546411 IGLV2-23P01705 113 aa12.38□□□□□ -0.43
CUX1-211ENST00000546411 MGAQ8IWI9 3026 aa12.37□□□□□ -0.43
CUX1-211ENST00000546411 H3BRN7 92 aa12.37□□□□□ -0.43
CUX1-211ENST00000546411 IGLV1-47P01700 117 aa12.37□□□□□ -0.43
CUX1-211ENST00000546411 GTSCR1Q86UQ5 136 aa12.37□□□□□ -0.43
CUX1-211ENST00000546411 PRR25Q96S07 402 aa12.37□□□□□ -0.43
CUX1-211ENST00000546411 RHPN1-AS1Q9BWJ2 59 aa12.37□□□□□ -0.43
CUX1-211ENST00000546411 NXT2Q9NPJ8 142 aaKnown RBP12.37□□□□□ -0.43
CUX1-211ENST00000546411 ATG2AQ2TAZ0 1938 aa12.37□□□□□ -0.43
CUX1-211ENST00000546411 TRAV12-3A0A0B4J271 114 aa12.37□□□□□ -0.43
CUX1-211ENST00000546411 IGHV2-70DA0A0C4DH43 119 aa12.37□□□□□ -0.43
CUX1-211ENST00000546411 IGKV3OR2-268A0A0C4DH90 116 aa12.36□□□□□ -0.43
CUX1-211ENST00000546411 PSMB11A5LHX3 300 aa12.36□□□□□ -0.43
CUX1-211ENST00000546411 PPBPP02775 128 aa12.36□□□□□ -0.43
CUX1-211ENST00000546411 COA6Q5JTJ3 125 aaKnown RBP12.36□□□□□ -0.43
CUX1-211ENST00000546411 PRSS57Q6UWY2 283 aa12.36□□□□□ -0.43
CUX1-211ENST00000546411 ADORA2A-AS1P86434 159 aa12.36□□□□□ -0.43
CUX1-211ENST00000546411 PDE6HQ13956 83 aa12.36□□□□□ -0.43
CUX1-211ENST00000546411 SRSF8Q9BRL6 282 aaKnown RBP12.36□□□□□ -0.43
CUX1-211ENST00000546411 ST20Q9HBF5 79 aa12.36□□□□□ -0.43
CUX1-211ENST00000546411 PEF1Q9UBV8 284 aaKnown RBP12.36□□□□□ -0.43
CUX1-211ENST00000546411 NHP2Q9NX24 153 aaKnown RBP12.36□□□□□ -0.43
CUX1-211ENST00000546411 IGLL1P15814 213 aa12.35□□□□□ -0.43
CUX1-211ENST00000546411 ZNF492Q9P255 531 aa12.35□□□□□ -0.43
CUX1-211ENST00000546411 TRBV7-1A0A0A6YYK4 115 aa12.35□□□□□ -0.43
CUX1-211ENST00000546411 B4DSR2 109 aa12.35□□□□□ -0.43
CUX1-211ENST00000546411 PLP1P60201 277 aa12.35□□□□□ -0.43
CUX1-211ENST00000546411 EXPH5Q8NEV8 1989 aa12.35□□□□□ -0.43
CUX1-211ENST00000546411 GP9P14770 177 aa12.35□□□□□ -0.43
CUX1-211ENST00000546411 TMEM158Q8WZ71 300 aa12.35□□□□□ -0.43
CUX1-211ENST00000546411 C20orf144Q9BQM9 153 aa12.35□□□□□ -0.43
CUX1-211ENST00000546411 I3L2K1 104 aa12.35□□□□□ -0.43
CUX1-211ENST00000546411 DSCAML1Q8TD84 2053 aa12.34□□□□□ -0.43
CUX1-211ENST00000546411 IGHV1-24A0A0C4DH33 117 aa12.34□□□□□ -0.43
CUX1-211ENST00000546411 IGLC2P0DOY2 106 aa12.34□□□□□ -0.43
CUX1-211ENST00000546411 IGLC3P0DOY3 106 aa12.34□□□□□ -0.43
CUX1-211ENST00000546411 FAM110DQ8TAY7 271 aaPredicted RBP12.34□□□□□ -0.43
CUX1-211ENST00000546411 DUX3Q96PT4 197 aa12.34□□□□□ -0.43
CUX1-211ENST00000546411 DLEU1O43261 78 aa12.34□□□□□ -0.43
CUX1-211ENST00000546411 APOMO95445 188 aa12.34□□□□□ -0.43
CUX1-211ENST00000546411 LDLRAD2Q5SZI1 272 aa12.34□□□□□ -0.43
CUX1-211ENST00000546411 RAX2Q96IS3 184 aa12.34□□□□□ -0.43
CUX1-211ENST00000546411 IGHV3-73A0A0B4J1V6 119 aa12.34□□□□□ -0.43
CUX1-211ENST00000546411 EMP1P54849 157 aa12.34□□□□□ -0.43
CUX1-211ENST00000546411 TRAV26-2A0A0B4J265 109 aa12.33□□□□□ -0.44
CUX1-211ENST00000546411 Q6ZVH6 145 aa12.33□□□□□ -0.44
CUX1-211ENST00000546411 TTC9CQ8N5M4 171 aa12.33□□□□□ -0.44
CUX1-211ENST00000546411 AMMECR1LQ6DCA0 310 aa12.33□□□□□ -0.44
CUX1-211ENST00000546411 Q8N7P7 452 aa12.33□□□□□ -0.44
CUX1-211ENST00000546411 PRSS22Q9GZN4 317 aa12.33□□□□□ -0.44
CUX1-211ENST00000546411 PRSS46E5RG02 174 aa12.33□□□□□ -0.44
CUX1-211ENST00000546411 SMIM13P0DJ93 91 aa12.33□□□□□ -0.44
CUX1-211ENST00000546411 ZFP36P26651 326 aaKnown RBP12.33□□□□□ -0.44
CUX1-211ENST00000546411 SRSF1Q07955 248 aaKnown RBP eCLIP12.33□□□□□ -0.44
CUX1-211ENST00000546411 LINC00173Q6ZV60 143 aa12.33□□□□□ -0.44
CUX1-211ENST00000546411 EPG5Q9HCE0 2579 aa12.33□□□□□ -0.44
CUX1-211ENST00000546411 A0A087WWL8 130 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 TEX22C9J3V5 150 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 LTAP01374 205 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 FAM104BQ5XKR9 115 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 GFRA4Q9GZZ7 299 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 IGKV1D-37A0A075B6S9 117 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 IGHV1-69DA0A0B4J2H0 117 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 DPM2O94777 84 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 IGHV1-69P01742 117 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 CD300EQ496F6 205 aaPredicted RBP12.32□□□□□ -0.44
CUX1-211ENST00000546411 C8orf86Q6ZUL3 223 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 C9orf139Q6ZV77 190 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 C8orf31Q8N9H6 132 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 BEX4Q9NWD9 120 aaPredicted RBP12.32□□□□□ -0.44
CUX1-211ENST00000546411 TMEM14CQ9P0S9 112 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 SYNJ2BPP57105 145 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 MRPL51Q4U2R6 128 aaKnown RBP12.32□□□□□ -0.44
CUX1-211ENST00000546411 CT83Q5H943 113 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 NRGNQ92686 78 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 MSMBP08118 114 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 LGALS3P17931 250 aaKnown RBP12.32□□□□□ -0.44
CUX1-211ENST00000546411 ZC2HC1BQ5TFG8 222 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 SMIM12Q96EX1 92 aa12.32□□□□□ -0.44
CUX1-211ENST00000546411 IGHV3-64A0A075B6Q5 118 aa12.31□□□□□ -0.44
CUX1-211ENST00000546411 RNF223E7ERA6 249 aa12.31□□□□□ -0.44
CUX1-211ENST00000546411 NPIPB6E9PJ23 425 aa12.31□□□□□ -0.44
CUX1-211ENST00000546411 F6UB75 175 aa12.31□□□□□ -0.44
CUX1-211ENST00000546411 TNFRSF6BO95407 300 aa12.31□□□□□ -0.44
CUX1-211ENST00000546411 IGF2BP2-AS1Q96M15 143 aa12.31□□□□□ -0.44
CUX1-211ENST00000546411 IGHV7-81A0A0B4J1V7 117 aa12.31□□□□□ -0.44
CUX1-211ENST00000546411 HOXB4P17483 251 aaPredicted RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms