RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, human

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN6-222	ENST00000543744	SRSF2	Q01130	221 aa	Known RBP	13.7	□□□□□ -0.22
PTPN6-222	ENST00000543744	FAM104B	Q5XKR9	115 aa		13.7	□□□□□ -0.22
PTPN6-222	ENST00000543744	AP5S1	Q9NUS5	200 aa		13.7	□□□□□ -0.22
PTPN6-222	ENST00000543744	IGHV4-30-2	A0A087WSY4	118 aa		13.69	□□□□□ -0.22
PTPN6-222	ENST00000543744	MUC21	A0A0G2JKD1	596 aa		13.69	□□□□□ -0.22
PTPN6-222	ENST00000543744	MUC21	A0A140T8X8	626 aa		13.69	□□□□□ -0.22
PTPN6-222	ENST00000543744	C20orf202	A1L168	122 aa		13.69	□□□□□ -0.22
PTPN6-222	ENST00000543744	TMEM8B	A6NDV4	472 aa		13.69	□□□□□ -0.22
PTPN6-222	ENST00000543744	MUC21	Q5SSG8	566 aa		13.69	□□□□□ -0.22
PTPN6-222	ENST00000543744		Q6ZN92	141 aa		13.69	□□□□□ -0.22
PTPN6-222	ENST00000543744	PRSS3P2	Q8NHM4	247 aa		13.69	□□□□□ -0.22
PTPN6-222	ENST00000543744		U3KQE9	123 aa		13.69	□□□□□ -0.22
PTPN6-222	ENST00000543744	FA2H	Q7L5A8	372 aa		13.69	□□□□□ -0.22
PTPN6-222	ENST00000543744	HSPB8	Q9UJY1	196 aa		13.69	□□□□□ -0.22
PTPN6-222	ENST00000543744		D6R8Y8	96 aa		13.68	□□□□□ -0.22
PTPN6-222	ENST00000543744	IGLC6	P0CF74	106 aa		13.68	□□□□□ -0.22
PTPN6-222	ENST00000543744	TWIST1	Q15672	202 aa		13.68	□□□□□ -0.22
PTPN6-222	ENST00000543744	LY6E	Q16553	131 aa		13.68	□□□□□ -0.22
PTPN6-222	ENST00000543744	AMN1	Q8IY45	258 aa		13.68	□□□□□ -0.22
PTPN6-222	ENST00000543744	MAP1LC3C	Q9BXW4	147 aa		13.68	□□□□□ -0.22
PTPN6-222	ENST00000543744	TRAV8-2	A0A0B4J237	113 aa		13.68	□□□□□ -0.22
PTPN6-222	ENST00000543744	OR4C46	A6NHA9	309 aa		13.68	□□□□□ -0.22
PTPN6-222	ENST00000543744	IGF1	P05019	195 aa		13.68	□□□□□ -0.22
PTPN6-222	ENST00000543744	ARL3	P36405	182 aa		13.68	□□□□□ -0.22
PTPN6-222	ENST00000543744	C8orf86	Q6ZUL3	223 aa		13.68	□□□□□ -0.22
PTPN6-222	ENST00000543744	IL17REL	Q6ZVW7	336 aa		13.68	□□□□□ -0.22
PTPN6-222	ENST00000543744		U3KQK5	164 aa		13.68	□□□□□ -0.22
PTPN6-222	ENST00000543744	TCAP	O15273	167 aa		13.67	□□□□□ -0.22
PTPN6-222	ENST00000543744	MSMB	P08118	114 aa		13.67	□□□□□ -0.22
PTPN6-222	ENST00000543744	HNRNPA3	P51991	378 aa	Known RBP	13.67	□□□□□ -0.22
PTPN6-222	ENST00000543744	BATF	Q16520	125 aa		13.67	□□□□□ -0.22
PTPN6-222	ENST00000543744	ZNF575	Q86XF7	245 aa		13.67	□□□□□ -0.22
PTPN6-222	ENST00000543744	ORMDL3	Q8N138	153 aa		13.67	□□□□□ -0.22
PTPN6-222	ENST00000543744	MRPL53	Q96EL3	112 aa	Known RBP	13.67	□□□□□ -0.22
PTPN6-222	ENST00000543744	PRELID3A	Q96N28	172 aa		13.67	□□□□□ -0.22
PTPN6-222	ENST00000543744		H3BUX3	64 aa		13.66	□□□□□ -0.22
PTPN6-222	ENST00000543744	RPLP1	P05386	114 aa	Known RBP	13.66	□□□□□ -0.22
PTPN6-222	ENST00000543744	IGLL1	P15814	213 aa		13.66	□□□□□ -0.22
PTPN6-222	ENST00000543744	AGPAT4-IT1	Q9H0P7	198 aa		13.66	□□□□□ -0.22
PTPN6-222	ENST00000543744	VPS13C	Q709C8	3753 aa		13.66	□□□□□ -0.22
PTPN6-222	ENST00000543744	MRPL51	Q4U2R6	128 aa	Known RBP	13.66	□□□□□ -0.22
PTPN6-222	ENST00000543744	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	13.66	□□□□□ -0.22
PTPN6-222	ENST00000543744		A6NDX4	124 aa		13.65	□□□□□ -0.22
PTPN6-222	ENST00000543744	IFI27	P40305	119 aa	Predicted RBP	13.65	□□□□□ -0.22
PTPN6-222	ENST00000543744	LINC01559	Q495D7	138 aa		13.65	□□□□□ -0.22
PTPN6-222	ENST00000543744	TMEM78	Q5T7P6	136 aa		13.65	□□□□□ -0.22
PTPN6-222	ENST00000543744	PET117	Q6UWS5	81 aa		13.65	□□□□□ -0.22
PTPN6-222	ENST00000543744	TMEM191A	Q9H0A3	160 aa		13.65	□□□□□ -0.22
PTPN6-222	ENST00000543744	IGSF10	Q6WRI0	2623 aa		13.65	□□□□□ -0.22
PTPN6-222	ENST00000543744	DOPEY1	Q5JWR5	2465 aa		13.65	□□□□□ -0.23
PTPN6-222	ENST00000543744	IGHG2	P01859	326 aa		13.64	□□□□□ -0.23
PTPN6-222	ENST00000543744	OR10AG1	Q8NH19	301 aa		13.64	□□□□□ -0.23
PTPN6-222	ENST00000543744	HIF1AN	Q9NWT6	349 aa		13.64	□□□□□ -0.23
PTPN6-222	ENST00000543744	COL12A1	Q99715	3063 aa		13.64	□□□□□ -0.23
PTPN6-222	ENST00000543744	LOC389332	A0A1B0GUA5	103 aa		13.64	□□□□□ -0.23
PTPN6-222	ENST00000543744	SIGLEC8	Q9NYZ4	499 aa		13.64	□□□□□ -0.23
PTPN6-222	ENST00000543744	FLNC	Q14315	2725 aa		13.63	□□□□□ -0.23
PTPN6-222	ENST00000543744		H3BUA1	57 aa		13.63	□□□□□ -0.23
PTPN6-222	ENST00000543744	BRI3	O95415	125 aa		13.63	□□□□□ -0.23
PTPN6-222	ENST00000543744	PPIF	P30405	207 aa	Known RBP	13.63	□□□□□ -0.23
PTPN6-222	ENST00000543744	TSPO	P30536	169 aa		13.63	□□□□□ -0.23
PTPN6-222	ENST00000543744	CKS2	P33552	79 aa		13.63	□□□□□ -0.23
PTPN6-222	ENST00000543744	GLMP	Q8WWB7	406 aa		13.63	□□□□□ -0.23
PTPN6-222	ENST00000543744	USMG5	Q96IX5	58 aa		13.63	□□□□□ -0.23
PTPN6-222	ENST00000543744	C16orf92	Q96LL3	132 aa		13.63	□□□□□ -0.23
PTPN6-222	ENST00000543744	CNFN	Q9BYD5	112 aa		13.63	□□□□□ -0.23
PTPN6-222	ENST00000543744	TRBV12-3	P01733	135 aa		13.63	□□□□□ -0.23
PTPN6-222	ENST00000543744	HIST1H1A	Q02539	215 aa	Predicted RBP	13.63	□□□□□ -0.23
PTPN6-222	ENST00000543744	PSMG3-AS1	Q96PY0	264 aa		13.63	□□□□□ -0.23
PTPN6-222	ENST00000543744	SPOCK3	Q9BQ16	436 aa		13.63	□□□□□ -0.23
PTPN6-222	ENST00000543744	LAMTOR2	Q9Y2Q5	125 aa		13.63	□□□□□ -0.23
PTPN6-222	ENST00000543744		B4DSR2	109 aa		13.62	□□□□□ -0.23
PTPN6-222	ENST00000543744		H0Y8G0	127 aa		13.62	□□□□□ -0.23
PTPN6-222	ENST00000543744	NDUFA4	O00483	81 aa		13.62	□□□□□ -0.23
PTPN6-222	ENST00000543744	UNQ9165/PRO28630	Q6UXU0	137 aa		13.62	□□□□□ -0.23
PTPN6-222	ENST00000543744	C9orf47	Q6ZRZ4	202 aa		13.62	□□□□□ -0.23
PTPN6-222	ENST00000543744	ZNF747	Q9BV97	191 aa		13.62	□□□□□ -0.23
PTPN6-222	ENST00000543744	ZFHX3	Q15911	3703 aa		13.62	□□□□□ -0.23
PTPN6-222	ENST00000543744	BLCAP	P62952	87 aa		13.61	□□□□□ -0.23
PTPN6-222	ENST00000543744	FAM106A	Q4KMX7	169 aa		13.61	□□□□□ -0.23
PTPN6-222	ENST00000543744	COL5A1-AS1	Q5SY13	56 aa		13.61	□□□□□ -0.23
PTPN6-222	ENST00000543744	ST20	Q9HBF5	79 aa		13.61	□□□□□ -0.23
PTPN6-222	ENST00000543744	MSRB1	Q9NZV6	116 aa		13.61	□□□□□ -0.23
PTPN6-222	ENST00000543744	MRPS16	Q9Y3D3	137 aa	Known RBP	13.61	□□□□□ -0.23
PTPN6-222	ENST00000543744	C9orf139	Q6ZV77	190 aa		13.61	□□□□□ -0.23
PTPN6-222	ENST00000543744	SPG11	Q96JI7	2443 aa		13.6	□□□□□ -0.23
PTPN6-222	ENST00000543744	IGKV3D-20	A0A0C4DH25	116 aa		13.6	□□□□□ -0.23
PTPN6-222	ENST00000543744	HSBP1L1	C9JCN9	74 aa		13.6	□□□□□ -0.23
PTPN6-222	ENST00000543744	SMKR1	H3BMG3	65 aa		13.6	□□□□□ -0.23
PTPN6-222	ENST00000543744	IGHV3-11	P01762	117 aa		13.6	□□□□□ -0.23
PTPN6-222	ENST00000543744	PF4V1	P10720	104 aa		13.6	□□□□□ -0.23
PTPN6-222	ENST00000543744	USP9X	Q93008	2570 aa	Predicted RBP	13.6	□□□□□ -0.23
PTPN6-222	ENST00000543744	hDV102S1	A0JD36	115 aa		13.59	□□□□□ -0.23
PTPN6-222	ENST00000543744	SMAD7	O15105	426 aa	Known RBP	13.59	□□□□□ -0.23
PTPN6-222	ENST00000543744	DSCR9	P59020	149 aa		13.59	□□□□□ -0.23
PTPN6-222	ENST00000543744	LOXL1	Q08397	574 aa	Predicted RBP	13.59	□□□□□ -0.23
PTPN6-222	ENST00000543744	MCRIP2	Q9BUT9	160 aa	Known RBP	13.59	□□□□□ -0.23
PTPN6-222	ENST00000543744	KLK15	Q9H2R5	256 aa		13.59	□□□□□ -0.23
PTPN6-222	ENST00000543744	NCR2	O95944	276 aa		13.59	□□□□□ -0.23
PTPN6-222	ENST00000543744	NPY	P01303	97 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms