RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 GPHA2Q96T91 129 aa6.26□□□□□ -1.41
VPS13D-211ENST00000543710 IGHV2-70P01814 119 aa6.25□□□□□ -1.41
VPS13D-211ENST00000543710 NHLRC4P0CG21 123 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-211ENST00000543710 GP9P14770 177 aa6.25□□□□□ -1.41
VPS13D-211ENST00000543710 SMIM2Q9BVW6 85 aa6.25□□□□□ -1.41
VPS13D-211ENST00000543710 LINC00473A8K010 186 aa6.25□□□□□ -1.41
VPS13D-211ENST00000543710 PMS2P5A8MQ11 134 aa6.25□□□□□ -1.41
VPS13D-211ENST00000543710 FGFBP3Q8TAT2 258 aa6.25□□□□□ -1.41
VPS13D-211ENST00000543710 HIGD1BQ9P298 99 aa6.25□□□□□ -1.41
VPS13D-211ENST00000543710 GREB1Q4ZG55 1949 aa6.25□□□□□ -1.41
VPS13D-211ENST00000543710 ADAMTSL5Q6ZMM2 481 aa6.25□□□□□ -1.41
VPS13D-211ENST00000543710 FOXI2Q6ZQN5 318 aa6.25□□□□□ -1.41
VPS13D-211ENST00000543710 NUP205Q92621 2012 aa6.25□□□□□ -1.41
VPS13D-211ENST00000543710 ATG2BQ96BY7 2078 aa6.25□□□□□ -1.41
VPS13D-211ENST00000543710 LSM4Q9Y4Z0 139 aaKnown RBP6.25□□□□□ -1.41
VPS13D-211ENST00000543710 NOTCH2Q04721 2471 aa6.25□□□□□ -1.41
VPS13D-211ENST00000543710 C15orf65H3BRN8 121 aa6.24□□□□□ -1.41
VPS13D-211ENST00000543710 SNRPCP09234 159 aaKnown RBP6.24□□□□□ -1.41
VPS13D-211ENST00000543710 ZNF664Q8N3J9 261 aa6.24□□□□□ -1.41
VPS13D-211ENST00000543710 STPG4Q8N801 248 aa6.24□□□□□ -1.41
VPS13D-211ENST00000543710 Q8NA96 180 aa6.24□□□□□ -1.41
VPS13D-211ENST00000543710 IGKV3-20P01619 116 aa6.24□□□□□ -1.41
VPS13D-211ENST00000543710 KLRD1Q13241 179 aa6.24□□□□□ -1.41
VPS13D-211ENST00000543710 TMEM95Q3KNT9 176 aa6.24□□□□□ -1.41
VPS13D-211ENST00000543710 IGHV1OR15-1A0A075B7D0 117 aa6.24□□□□□ -1.41
VPS13D-211ENST00000543710 GATA2P23769 480 aaPredicted RBP6.24□□□□□ -1.41
VPS13D-211ENST00000543710 C17orf58Q2M2W7 97 aa6.24□□□□□ -1.41
VPS13D-211ENST00000543710 BVES-AS1Q5T3Y7 98 aa6.24□□□□□ -1.41
VPS13D-211ENST00000543710 IGLV3-9A0A075B6K5 115 aa6.24□□□□□ -1.41
VPS13D-211ENST00000543710 A0A087X0K7 114 aa6.24□□□□□ -1.41
VPS13D-211ENST00000543710 A0A1W2PPM0 123 aa6.24□□□□□ -1.41
VPS13D-211ENST00000543710 CST9LQ9H4G1 147 aa6.24□□□□□ -1.41
VPS13D-211ENST00000543710 IGHV3-66A0A0C4DH42 116 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 MBD6Q96DN6 1003 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 SAA4P35542 130 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 PAX9P55771 341 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 OCIAD2Q56VL3 154 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 SIGLEC8Q9NYZ4 499 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 HIVEP2P31629 2446 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 CCL24O00175 119 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 PPIFP30405 207 aaKnown RBP6.23□□□□□ -1.41
VPS13D-211ENST00000543710 CHCHD5Q9BSY4 110 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 KIR2DL5BA0A0G2JN68 375 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 KIR2DL5BA0A0G2JPC4 375 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 TRACP01848 142 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 ADORA2A-AS1P86434 159 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 ZNF876PQ49A33 203 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 C4orf48Q5BLP8 95 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 KIR2DL5AQ8N109 375 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 TMEM126AQ9H061 195 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 RETNQ9HD89 108 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 GAGE12BA1L429 117 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 IGLC2P0DOY2 106 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 IGLC3P0DOY3 106 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 CD300EQ496F6 205 aaPredicted RBP6.23□□□□□ -1.41
VPS13D-211ENST00000543710 JPT2Q9H910 190 aa6.23□□□□□ -1.41
VPS13D-211ENST00000543710 A0A1W2PPI3 338 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 FCN3O75636 299 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 FSTL3O95633 263 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 SPINK8P0C7L1 97 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 RTTNQ86VV8 2226 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 C9JQL5 133 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 MRPL51Q4U2R6 128 aaKnown RBP6.22□□□□□ -1.41
VPS13D-211ENST00000543710 C16orf54Q6UWD8 224 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 C14orf177Q52M58 125 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 TMEM219Q86XT9 240 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 WFDC11Q8NEX6 87 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 TOMM7Q9P0U1 55 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 WDR81Q562E7 1941 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 PRR20EP86478 221 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 PRR20CP86479 221 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 PRR20DP86480 221 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 PRR20BP86481 221 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 PRR20AP86496 221 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 MRPL23Q16540 153 aaKnown RBP6.22□□□□□ -1.41
VPS13D-211ENST00000543710 ARTNQ5T4W7 220 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 IGFL2Q6UWQ7 119 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 Q6ZWC4 215 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 FXYD5Q96DB9 178 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 C1orf147Q96MC9 270 aaPredicted RBP6.22□□□□□ -1.41
VPS13D-211ENST00000543710 UBL5Q9BZL1 73 aa6.22□□□□□ -1.41
VPS13D-211ENST00000543710 DENND4AQ7Z401 1863 aa6.21□□□□□ -1.41
VPS13D-211ENST00000543710 EXOC3-AS1Q8N2X6 119 aa6.21□□□□□ -1.41
VPS13D-211ENST00000543710 RHPN1-AS1Q9BWJ2 59 aa6.21□□□□□ -1.41
VPS13D-211ENST00000543710 IGHV4-30-2A0A087WSY4 118 aa6.21□□□□□ -1.41
VPS13D-211ENST00000543710 IGHV7-4-1A0A0J9YVY3 117 aa6.21□□□□□ -1.41
VPS13D-211ENST00000543710 LY6G6CO95867 125 aa6.21□□□□□ -1.41
VPS13D-211ENST00000543710 CDKN1BP46527 198 aa6.21□□□□□ -1.41
VPS13D-211ENST00000543710 PIFOQ8TCI5 191 aa6.21□□□□□ -1.41
VPS13D-211ENST00000543710 TMEM243Q9BU79 118 aa6.21□□□□□ -1.41
VPS13D-211ENST00000543710 FBXL19-AS1Q494R0 122 aa6.21□□□□□ -1.42
VPS13D-211ENST00000543710 MUC21Q5SSG8 566 aa6.21□□□□□ -1.42
VPS13D-211ENST00000543710 LTBP2Q14767 1821 aa6.21□□□□□ -1.42
VPS13D-211ENST00000543710 F8VRH5 84 aa6.21□□□□□ -1.42
VPS13D-211ENST00000543710 ANKRD29Q8N6D5 301 aa6.21□□□□□ -1.42
VPS13D-211ENST00000543710 PRR25Q96S07 402 aa6.21□□□□□ -1.42
VPS13D-211ENST00000543710 TRAV3A0A0B4J244 114 aa6.21□□□□□ -1.42
VPS13D-211ENST00000543710 TRAV25A0A0B4J276 109 aa6.21□□□□□ -1.42
VPS13D-211ENST00000543710 COL8A2P25067 703 aa6.21□□□□□ -1.42
VPS13D-211ENST00000543710 CXCL5P42830 114 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms