RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	EIF5A2	Q9GZV4	153 aa	Known RBP	7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	SLC35B3	Q9H1N7	401 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	XCL2	Q9UBD3	114 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	VAX2	Q9UIW0	290 aa		7.47	□□□□□ -1.21
CPSF7-221	ENST00000543545	NBEAL1	Q6ZS30	2694 aa		7.46	□□□□□ -1.21
CPSF7-221	ENST00000543545	TRAV8-1	A0A0A6YYK1	113 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	TRAV34	A0A0B4J273	112 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	RBAKDN	A6NC62	111 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	RBFOX3	A6NFN3	312 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	UBE2C	O00762	179 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	LEP	P41159	167 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	AKR1C3	P42330	323 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	PMS2P11	Q13670	270 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	SPINK13	Q1W4C9	94 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	TOR2A	Q5JU69	321 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	LINC00322	Q6ZN03	302 aa	Predicted RBP	7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	C9orf47	Q6ZRZ4	202 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	PRNT	Q86SH4	94 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	SBSPON	Q8IVN8	264 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	CCDC28A	Q8IWP9	274 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	LYPD6B	Q8NI32	183 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	CLUHP3	Q96NS8	147 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	RARRES2	Q99969	163 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	TXNDC17	Q9BRA2	123 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	TCEAL7	Q9BRU2	100 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	C1QTNF4	Q9BXJ3	329 aa		7.46	□□□□□ -1.22
CPSF7-221	ENST00000543545	TRAV12-2	A0A075B6T6	113 aa		7.45	□□□□□ -1.22
CPSF7-221	ENST00000543545	LOC102723971	A0A1B0GUV8	181 aa		7.45	□□□□□ -1.22
CPSF7-221	ENST00000543545	SCO2	A0A1W2PP80	73 aa		7.45	□□□□□ -1.22
CPSF7-221	ENST00000543545		M0R2Z0	102 aa		7.45	□□□□□ -1.22
CPSF7-221	ENST00000543545	AMBP	P02760	352 aa		7.45	□□□□□ -1.22
CPSF7-221	ENST00000543545	UBE2G1	P62253	170 aa		7.45	□□□□□ -1.22
CPSF7-221	ENST00000543545	FLI1	Q01543	452 aa	Predicted RBP	7.45	□□□□□ -1.22
CPSF7-221	ENST00000543545	MEF2B	Q02080	365 aa	Predicted RBP	7.45	□□□□□ -1.22
CPSF7-221	ENST00000543545		Q8TAT8	98 aa		7.45	□□□□□ -1.22
CPSF7-221	ENST00000543545	LINC00479	Q96M42	142 aa		7.45	□□□□□ -1.22
CPSF7-221	ENST00000543545	NDFIP1	Q9BT67	221 aa		7.45	□□□□□ -1.22
CPSF7-221	ENST00000543545	MED9	Q9NWA0	146 aa		7.45	□□□□□ -1.22
CPSF7-221	ENST00000543545	ZNF492	Q9P255	531 aa		7.45	□□□□□ -1.22
CPSF7-221	ENST00000543545	PSG8	Q9UQ74	426 aa		7.45	□□□□□ -1.22
CPSF7-221	ENST00000543545	IGHV3OR16-12	A0A075B7B8	117 aa		7.44	□□□□□ -1.22
CPSF7-221	ENST00000543545	PDE6D	O43924	150 aa		7.44	□□□□□ -1.22
CPSF7-221	ENST00000543545	GPX1	P07203	203 aa		7.44	□□□□□ -1.22
CPSF7-221	ENST00000543545	RNASE4	P34096	147 aa	Known RBP	7.44	□□□□□ -1.22
CPSF7-221	ENST00000543545	CDKN1B	P46527	198 aa		7.44	□□□□□ -1.22
CPSF7-221	ENST00000543545	CEBPG	P53567	150 aa		7.44	□□□□□ -1.22
CPSF7-221	ENST00000543545	DEFB135	Q30KP9	77 aa		7.44	□□□□□ -1.22
CPSF7-221	ENST00000543545	ZNF506	Q5JVG8	444 aa		7.44	□□□□□ -1.22
CPSF7-221	ENST00000543545	AMTN	Q6UX39	209 aa		7.44	□□□□□ -1.22
CPSF7-221	ENST00000543545	TMEM75	Q8N9X5	138 aa		7.44	□□□□□ -1.22
CPSF7-221	ENST00000543545	FAM210A	Q96ND0	272 aa		7.44	□□□□□ -1.22
CPSF7-221	ENST00000543545	RCHY1	Q96PM5	261 aa		7.44	□□□□□ -1.22
CPSF7-221	ENST00000543545	ODF3	Q96PU9	254 aa		7.44	□□□□□ -1.22
CPSF7-221	ENST00000543545	B9D2	Q9BPU9	175 aa		7.44	□□□□□ -1.22
CPSF7-221	ENST00000543545	TMEM208	Q9BTX3	173 aa		7.44	□□□□□ -1.22
CPSF7-221	ENST00000543545	TREM1	Q9NP99	234 aa		7.44	□□□□□ -1.22
CPSF7-221	ENST00000543545	FBLL1	A6NHQ2	334 aa	Known RBP	7.43	□□□□□ -1.22
CPSF7-221	ENST00000543545		A8MTW9	85 aa		7.43	□□□□□ -1.22
CPSF7-221	ENST00000543545	INS	P01308	110 aa		7.43	□□□□□ -1.22
CPSF7-221	ENST00000543545	S100A9	P06702	114 aa	Known RBP	7.43	□□□□□ -1.22
CPSF7-221	ENST00000543545	PEA15	Q15121	130 aa		7.43	□□□□□ -1.22
CPSF7-221	ENST00000543545	CLLU1	Q5K131	121 aa		7.43	□□□□□ -1.22
CPSF7-221	ENST00000543545	SAPCD1	Q5SSQ6	148 aa		7.43	□□□□□ -1.22
CPSF7-221	ENST00000543545	FMC1	Q96HJ9	113 aa		7.43	□□□□□ -1.22
CPSF7-221	ENST00000543545	IGF2BP2-AS1	Q96M15	143 aa		7.43	□□□□□ -1.22
CPSF7-221	ENST00000543545	ZMAT4	Q9H898	229 aa		7.43	□□□□□ -1.22
CPSF7-221	ENST00000543545	GOLT1B	Q9Y3E0	138 aa		7.43	□□□□□ -1.22
CPSF7-221	ENST00000543545	TRAV12-3	A0A0B4J271	114 aa		7.42	□□□□□ -1.22
CPSF7-221	ENST00000543545	SPRY2	O43597	315 aa		7.42	□□□□□ -1.22
CPSF7-221	ENST00000543545	GIG44	P09565	113 aa	Predicted RBP	7.42	□□□□□ -1.22
CPSF7-221	ENST00000543545	TMEM183B	Q1AE95	376 aa		7.42	□□□□□ -1.22
CPSF7-221	ENST00000543545	ZNF674	Q2M3X9	581 aa		7.42	□□□□□ -1.22
CPSF7-221	ENST00000543545		Q6ZWC4	215 aa		7.42	□□□□□ -1.22
CPSF7-221	ENST00000543545	LINC01587	Q99440	93 aa		7.42	□□□□□ -1.22
CPSF7-221	ENST00000543545	SPATA25	Q9BR10	227 aa		7.42	□□□□□ -1.22
CPSF7-221	ENST00000543545	RETN	Q9HD89	108 aa		7.42	□□□□□ -1.22
CPSF7-221	ENST00000543545	LENEP	Q9Y5L5	61 aa		7.42	□□□□□ -1.22
CPSF7-221	ENST00000543545	TRBV7-9	A0A0J9YWB2	115 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	C7orf71	A4D174	169 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	IGLV2-11	P01706	119 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	HTN1	P15515	57 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	CRISP2	P16562	243 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	RPL35	P42766	123 aa	Known RBP	7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	BTN1A1	Q13410	526 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	KIR3DS1	Q14943	382 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	GFI1B	Q5VTD9	330 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	BAGE2	Q86Y30	109 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	OR11H2	Q8NH07	326 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	C2CD4C	Q8TF44	421 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	C11orf52	Q96A22	123 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	RNF183	Q96D59	192 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	FAM19A4	Q96LR4	140 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	C8orf49	Q96NF6	230 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	NIPSNAP3B	Q9BS92	247 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	ZFP30	Q9Y2G7	519 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	KLF12	Q9Y4X4	402 aa		7.41	□□□□□ -1.22
CPSF7-221	ENST00000543545	RAB19	A4D1S5	217 aa		7.4	□□□□□ -1.22
CPSF7-221	ENST00000543545	KLLN	B2CW77	178 aa		7.4	□□□□□ -1.22
CPSF7-221	ENST00000543545	TMEM250	H0YL14	139 aa		7.4	□□□□□ -1.22
CPSF7-221	ENST00000543545	RGS13	O14921	159 aa		7.4	□□□□□ -1.22

Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms