RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 Q6ZTI0 123 aa10.62□□□□□ -0.71
RTN3-211ENST00000542238 COMMD7Q86VX2 200 aa10.62□□□□□ -0.71
RTN3-211ENST00000542238 ASB13Q8WXK3 278 aa10.62□□□□□ -0.71
RTN3-211ENST00000542238 MED9Q9NWA0 146 aa10.62□□□□□ -0.71
RTN3-211ENST00000542238 A0A096LPF7 62 aa10.61□□□□□ -0.71
RTN3-211ENST00000542238 H3BTX0 84 aa10.61□□□□□ -0.71
RTN3-211ENST00000542238 SLC17A3O00476 420 aa10.61□□□□□ -0.71
RTN3-211ENST00000542238 AGPAT2O15120 278 aa10.61□□□□□ -0.71
RTN3-211ENST00000542238 SIVA1O15304 175 aa10.61□□□□□ -0.71
RTN3-211ENST00000542238 SCGB1D2O95969 90 aa10.61□□□□□ -0.71
RTN3-211ENST00000542238 ERVFC1-1P60608 527 aa10.61□□□□□ -0.71
RTN3-211ENST00000542238 OPCMLQ14982 345 aa10.61□□□□□ -0.71
RTN3-211ENST00000542238 C10orf113Q5VZT2 155 aa10.61□□□□□ -0.71
RTN3-211ENST00000542238 ODF3Q96PU9 254 aa10.61□□□□□ -0.71
RTN3-211ENST00000542238 SEC22CQ9BRL7 303 aa10.61□□□□□ -0.71
RTN3-211ENST00000542238 INAFM2P0DMQ5 153 aa10.6□□□□□ -0.71
RTN3-211ENST00000542238 CT45A10P0DMU9 189 aa10.6□□□□□ -0.71
RTN3-211ENST00000542238 TAS2R30P59541 319 aa10.6□□□□□ -0.71
RTN3-211ENST00000542238 RAB14P61106 215 aa10.6□□□□□ -0.71
RTN3-211ENST00000542238 CDPF1Q6NVV7 123 aa10.6□□□□□ -0.71
RTN3-211ENST00000542238 C12orf45Q8N5I9 185 aaPredicted RBP10.6□□□□□ -0.71
RTN3-211ENST00000542238 VSIG2Q96IQ7 327 aa10.6□□□□□ -0.71
RTN3-211ENST00000542238 GGACTQ9BVM4 153 aa10.6□□□□□ -0.71
RTN3-211ENST00000542238 HMSDA8MTL9 139 aa10.59□□□□□ -0.71
RTN3-211ENST00000542238 NPIPB6E9PJ23 425 aa10.59□□□□□ -0.71
RTN3-211ENST00000542238 IGLC2P0DOY2 106 aa10.59□□□□□ -0.71
RTN3-211ENST00000542238 GUK1Q16774 197 aa10.59□□□□□ -0.71
RTN3-211ENST00000542238 Q6ZRN7 208 aaPredicted RBP10.59□□□□□ -0.71
RTN3-211ENST00000542238 TMEM37Q8WXS4 190 aa10.59□□□□□ -0.71
RTN3-211ENST00000542238 C18orf15Q96N68 181 aa10.59□□□□□ -0.71
RTN3-211ENST00000542238 TMA7Q9Y2S6 64 aaKnown RBP10.59□□□□□ -0.71
RTN3-211ENST00000542238 TRGV1A0A0A0MS02 117 aa10.58□□□□□ -0.72
RTN3-211ENST00000542238 H3BQ15 152 aa10.58□□□□□ -0.72
RTN3-211ENST00000542238 L7N2F9 121 aa10.58□□□□□ -0.72
RTN3-211ENST00000542238 SLC25A5P05141 298 aaKnown RBP10.58□□□□□ -0.72
RTN3-211ENST00000542238 RAB31Q13636 194 aa10.58□□□□□ -0.72
RTN3-211ENST00000542238 IAH1Q2TAA2 248 aaPredicted RBP10.58□□□□□ -0.72
RTN3-211ENST00000542238 Q6ZRG5 221 aa10.58□□□□□ -0.72
RTN3-211ENST00000542238 LYPD1Q8N2G4 141 aa10.58□□□□□ -0.72
RTN3-211ENST00000542238 SAT2Q96F10 170 aaPredicted RBP10.58□□□□□ -0.72
RTN3-211ENST00000542238 DNAJC4Q9NNZ3 241 aa10.58□□□□□ -0.72
RTN3-211ENST00000542238 GSN-AS1Q9NRJ2 163 aa10.58□□□□□ -0.72
RTN3-211ENST00000542238 GSKIPQ9P0R6 139 aa10.58□□□□□ -0.72
RTN3-211ENST00000542238 FUT9Q9Y231 359 aa10.58□□□□□ -0.72
RTN3-211ENST00000542238 ICOSQ9Y6W8 199 aa10.58□□□□□ -0.72
RTN3-211ENST00000542238 LOC105371267A0A1B0GV96 52 aa10.57□□□□□ -0.72
RTN3-211ENST00000542238 NXPH4O95158 308 aa10.57□□□□□ -0.72
RTN3-211ENST00000542238 IFNA5P01569 189 aa10.57□□□□□ -0.72
RTN3-211ENST00000542238 MORN5Q5VZ52 161 aa10.57□□□□□ -0.72
RTN3-211ENST00000542238 NFE4Q86UQ8 179 aa10.57□□□□□ -0.72
RTN3-211ENST00000542238 FRZBQ92765 325 aa10.57□□□□□ -0.72
RTN3-211ENST00000542238 MGST2Q99735 147 aa10.57□□□□□ -0.72
RTN3-211ENST00000542238 HERC1Q15751 4861 aa10.56□□□□□ -0.72
RTN3-211ENST00000542238 C7orf71A4D174 169 aa10.56□□□□□ -0.72
RTN3-211ENST00000542238 PAX4O43316 350 aa10.56□□□□□ -0.72
RTN3-211ENST00000542238 CAMLGP49069 296 aa10.56□□□□□ -0.72
RTN3-211ENST00000542238 ARL16Q0P5N6 197 aa10.56□□□□□ -0.72
RTN3-211ENST00000542238 EIF4E3Q8N5X7 224 aaKnown RBP10.56□□□□□ -0.72
RTN3-211ENST00000542238 C11orf72Q8NBR9 251 aa10.56□□□□□ -0.72
RTN3-211ENST00000542238 OR1L4Q8NGR5 311 aa10.56□□□□□ -0.72
RTN3-211ENST00000542238 RCL1Q9Y2P8 373 aaKnown RBP10.56□□□□□ -0.72
RTN3-211ENST00000542238 TRAV9-2A0A087WT02 112 aa10.55□□□□□ -0.72
RTN3-211ENST00000542238 ZNF253O75346 499 aa10.55□□□□□ -0.72
RTN3-211ENST00000542238 ZNF324O75467 553 aaPredicted RBP10.55□□□□□ -0.72
RTN3-211ENST00000542238 FUSP35637 526 aaKnown RBP eCLIP10.55□□□□□ -0.72
RTN3-211ENST00000542238 VAMP2P63027 116 aa10.55□□□□□ -0.72
RTN3-211ENST00000542238 ANXA2RQ3ZCQ2 193 aa10.55□□□□□ -0.72
RTN3-211ENST00000542238 MRPL53Q96EL3 112 aaKnown RBP10.55□□□□□ -0.72
RTN3-211ENST00000542238 PFDN5Q99471 154 aa10.55□□□□□ -0.72
RTN3-211ENST00000542238 LINC00467Q9BRT7 94 aa10.55□□□□□ -0.72
RTN3-211ENST00000542238 TRAV5A0A0B4J249 113 aa10.54□□□□□ -0.72
RTN3-211ENST00000542238 SPINK4O60575 86 aa10.54□□□□□ -0.72
RTN3-211ENST00000542238 S100A11P31949 105 aa10.54□□□□□ -0.72
RTN3-211ENST00000542238 XGP55808 180 aa10.54□□□□□ -0.72
RTN3-211ENST00000542238 CYCSP99999 105 aaKnown RBP10.54□□□□□ -0.72
RTN3-211ENST00000542238 SLAQ13239 276 aa10.54□□□□□ -0.72
RTN3-211ENST00000542238 IL15RAQ13261 267 aa10.54□□□□□ -0.72
RTN3-211ENST00000542238 Q5VSD8 79 aa10.54□□□□□ -0.72
RTN3-211ENST00000542238 LINC00477Q96M19 166 aa10.54□□□□□ -0.72
RTN3-211ENST00000542238 KLLNB2CW77 178 aa10.53□□□□□ -0.72
RTN3-211ENST00000542238 MPDU1O75352 247 aa10.53□□□□□ -0.72
RTN3-211ENST00000542238 MBPP02686 304 aaPredicted RBP10.53□□□□□ -0.72
RTN3-211ENST00000542238 GPX1P07203 203 aa10.53□□□□□ -0.72
RTN3-211ENST00000542238 RNASE4P34096 147 aaKnown RBP10.53□□□□□ -0.72
RTN3-211ENST00000542238 TCL1AP56279 114 aa10.53□□□□□ -0.72
RTN3-211ENST00000542238 ERCC8Q13216 396 aa10.53□□□□□ -0.72
RTN3-211ENST00000542238 MIC13Q5XKP0 118 aa10.53□□□□□ -0.72
RTN3-211ENST00000542238 TMUB2Q71RG4 321 aa10.53□□□□□ -0.72
RTN3-211ENST00000542238 C2orf50Q96LR7 162 aa10.53□□□□□ -0.72
RTN3-211ENST00000542238 NMES1Q9C002 83 aa10.53□□□□□ -0.72
RTN3-211ENST00000542238 PRO0255Q9UI72 69 aa10.53□□□□□ -0.72
RTN3-211ENST00000542238 PRELID1Q9Y255 219 aa10.53□□□□□ -0.72
RTN3-211ENST00000542238 KLF12Q9Y4X4 402 aa10.53□□□□□ -0.72
RTN3-211ENST00000542238 TNFRSF18Q9Y5U5 241 aa10.53□□□□□ -0.72
RTN3-211ENST00000542238 TRBV19A0A075B6N1 114 aa10.52□□□□□ -0.73
RTN3-211ENST00000542238 M0R3E3 92 aa10.52□□□□□ -0.73
RTN3-211ENST00000542238 IGHV3-53P01767 116 aa10.52□□□□□ -0.73
RTN3-211ENST00000542238 NMBP08949 121 aa10.52□□□□□ -0.73
RTN3-211ENST00000542238 BTN1A1Q13410 526 aa10.52□□□□□ -0.73
RTN3-211ENST00000542238 MRPL23Q16540 153 aaKnown RBP10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms