RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 IGKV1-39P01597 117 aa11.22□□□□□ -0.61
COLCA1-204ENST00000540738 IGKV1D-39P04432 117 aa11.22□□□□□ -0.61
COLCA1-204ENST00000540738 LMO4P61968 165 aa11.22□□□□□ -0.61
COLCA1-204ENST00000540738 A8MXK9 166 aa11.22□□□□□ -0.61
COLCA1-204ENST00000540738 LINC00614P0C842 121 aa11.22□□□□□ -0.61
COLCA1-204ENST00000540738 RNF151Q2KHN1 245 aa11.22□□□□□ -0.61
COLCA1-204ENST00000540738 C1orf159Q96HA4 380 aa11.22□□□□□ -0.61
COLCA1-204ENST00000540738 SLURP1P55000 103 aa11.22□□□□□ -0.61
COLCA1-204ENST00000540738 PAX9P55771 341 aa11.22□□□□□ -0.61
COLCA1-204ENST00000540738 KLK9Q9UKQ9 250 aa11.22□□□□□ -0.61
COLCA1-204ENST00000540738 TRBV25-1A0A075B6N4 114 aa11.21□□□□□ -0.61
COLCA1-204ENST00000540738 GFI1BQ5VTD9 330 aa11.21□□□□□ -0.61
COLCA1-204ENST00000540738 Q8N9W7 124 aa11.21□□□□□ -0.61
COLCA1-204ENST00000540738 RASL10AQ92737 203 aa11.21□□□□□ -0.61
COLCA1-204ENST00000540738 CHCHD1Q96BP2 118 aaKnown RBP11.21□□□□□ -0.61
COLCA1-204ENST00000540738 FGF23Q9GZV9 251 aaPredicted RBP11.21□□□□□ -0.61
COLCA1-204ENST00000540738 TRAV25A0A0B4J276 109 aa11.21□□□□□ -0.61
COLCA1-204ENST00000540738 CHTOPQ9Y3Y2 248 aaKnown RBP11.21□□□□□ -0.61
COLCA1-204ENST00000540738 A0A087WWL8 130 aa11.21□□□□□ -0.62
COLCA1-204ENST00000540738 DPM2O94777 84 aa11.21□□□□□ -0.62
COLCA1-204ENST00000540738 CFHR3Q02985 330 aa11.21□□□□□ -0.62
COLCA1-204ENST00000540738 FSTL3O95633 263 aa11.21□□□□□ -0.62
COLCA1-204ENST00000540738 Q8N7P7 452 aa11.21□□□□□ -0.62
COLCA1-204ENST00000540738 IL17DQ8TAD2 202 aa11.21□□□□□ -0.62
COLCA1-204ENST00000540738 GAGE12JA6NER3 117 aa11.2□□□□□ -0.62
COLCA1-204ENST00000540738 IGHG2P01859 326 aa11.2□□□□□ -0.62
COLCA1-204ENST00000540738 RPL24P83731 157 aaKnown RBP11.2□□□□□ -0.62
COLCA1-204ENST00000540738 GAGE1Q13065 139 aa11.2□□□□□ -0.62
COLCA1-204ENST00000540738 GAGE4Q13068 117 aa11.2□□□□□ -0.62
COLCA1-204ENST00000540738 GAGE5Q13069 117 aa11.2□□□□□ -0.62
COLCA1-204ENST00000540738 GAGE13Q4V321 117 aa11.2□□□□□ -0.62
COLCA1-204ENST00000540738 PIFOQ8TCI5 191 aa11.2□□□□□ -0.62
COLCA1-204ENST00000540738 LAMTOR2Q9Y2Q5 125 aa11.2□□□□□ -0.62
COLCA1-204ENST00000540738 FABP2P12104 132 aa11.2□□□□□ -0.62
COLCA1-204ENST00000540738 HAPLN4Q86UW8 402 aa11.2□□□□□ -0.62
COLCA1-204ENST00000540738 IFITM2Q01629 132 aa11.2□□□□□ -0.62
COLCA1-204ENST00000540738 LINC01551Q86U37 167 aa11.2□□□□□ -0.62
COLCA1-204ENST00000540738 LSM4Q9Y4Z0 139 aaKnown RBP11.2□□□□□ -0.62
COLCA1-204ENST00000540738 NAV2Q8IVL1 2488 aa11.2□□□□□ -0.62
COLCA1-204ENST00000540738 IGLV1-47P01700 117 aa11.2□□□□□ -0.62
COLCA1-204ENST00000540738 CSTL1Q9H114 145 aa11.2□□□□□ -0.62
COLCA1-204ENST00000540738 SMAD5-AS1Q9Y6J3 95 aa11.2□□□□□ -0.62
COLCA1-204ENST00000540738 INAFM1C9JVW0 142 aa11.19□□□□□ -0.62
COLCA1-204ENST00000540738 SHISA2Q6UWI4 295 aa11.19□□□□□ -0.62
COLCA1-204ENST00000540738 ZNF491Q8N8L2 437 aa11.19□□□□□ -0.62
COLCA1-204ENST00000540738 C4orf3Q8WVX3 66 aa11.19□□□□□ -0.62
COLCA1-204ENST00000540738 GFRA4Q9GZZ7 299 aa11.19□□□□□ -0.62
COLCA1-204ENST00000540738 MRPL53Q96EL3 112 aaKnown RBP11.19□□□□□ -0.62
COLCA1-204ENST00000540738 TMEM242Q9NWH2 141 aa11.19□□□□□ -0.62
COLCA1-204ENST00000540738 KIAA1549LQ6ZVL6 1849 aa11.19□□□□□ -0.62
COLCA1-204ENST00000540738 PHLDA1Q8WV24 401 aaPredicted RBP11.19□□□□□ -0.62
COLCA1-204ENST00000540738 AJUBAQ96IF1 538 aa11.19□□□□□ -0.62
COLCA1-204ENST00000540738 ZNF492Q9P255 531 aa11.19□□□□□ -0.62
COLCA1-204ENST00000540738 D6R8Y8 96 aa11.19□□□□□ -0.62
COLCA1-204ENST00000540738 PLNP26678 52 aa11.19□□□□□ -0.62
COLCA1-204ENST00000540738 C6orf226Q5I0X4 101 aa11.19□□□□□ -0.62
COLCA1-204ENST00000540738 RNF152Q8N8N0 203 aa11.19□□□□□ -0.62
COLCA1-204ENST00000540738 ZNF114Q8NC26 417 aa11.19□□□□□ -0.62
COLCA1-204ENST00000540738 WIPF2Q8TF74 440 aaPredicted RBP11.19□□□□□ -0.62
COLCA1-204ENST00000540738 C10orf142B7Z368 130 aa11.19□□□□□ -0.62
COLCA1-204ENST00000540738 LINC00158P58513 81 aa11.19□□□□□ -0.62
COLCA1-204ENST00000540738 PYGO2Q9BRQ0 406 aa11.19□□□□□ -0.62
COLCA1-204ENST00000540738 A6NDX4 124 aa11.18□□□□□ -0.62
COLCA1-204ENST00000540738 PAX4O43316 350 aa11.18□□□□□ -0.62
COLCA1-204ENST00000540738 SONP18583 2426 aaKnown RBP11.18□□□□□ -0.62
COLCA1-204ENST00000540738 NCR2O95944 276 aa11.18□□□□□ -0.62
COLCA1-204ENST00000540738 SSBP2P81877 361 aaPredicted RBP11.18□□□□□ -0.62
COLCA1-204ENST00000540738 SRSF2Q01130 221 aaKnown RBP11.18□□□□□ -0.62
COLCA1-204ENST00000540738 VWC2Q2TAL6 325 aa11.18□□□□□ -0.62
COLCA1-204ENST00000540738 NDUFA11Q86Y39 141 aa11.17□□□□□ -0.62
COLCA1-204ENST00000540738 ARL6IP6Q8N6S5 226 aa11.17□□□□□ -0.62
COLCA1-204ENST00000540738 TMEM170AQ8WVE7 144 aa11.17□□□□□ -0.62
COLCA1-204ENST00000540738 TRAV12-2A0A075B6T6 113 aa11.17□□□□□ -0.62
COLCA1-204ENST00000540738 S100A7L2Q5SY68 101 aa11.17□□□□□ -0.62
COLCA1-204ENST00000540738 ZNF493Q6ZR52 646 aa11.17□□□□□ -0.62
COLCA1-204ENST00000540738 IFI27L1Q96BM0 104 aa11.17□□□□□ -0.62
COLCA1-204ENST00000540738 SLC25A2Q9BXI2 301 aa11.17□□□□□ -0.62
COLCA1-204ENST00000540738 SPART-AS1P0CW21 52 aa11.17□□□□□ -0.62
COLCA1-204ENST00000540738 IGFBPL1Q8WX77 278 aa11.17□□□□□ -0.62
COLCA1-204ENST00000540738 IGLV11-55A0A075B6I3 123 aa11.16□□□□□ -0.62
COLCA1-204ENST00000540738 FAM231BA6NCW3 169 aa11.16□□□□□ -0.62
COLCA1-204ENST00000540738 MSMPQ1L6U9 139 aa11.16□□□□□ -0.62
COLCA1-204ENST00000540738 BCL6BQ8N143 479 aaPredicted RBP11.16□□□□□ -0.62
COLCA1-204ENST00000540738 PRR25Q96S07 402 aa11.16□□□□□ -0.62
COLCA1-204ENST00000540738 DERL1Q9BUN8 251 aa11.16□□□□□ -0.62
COLCA1-204ENST00000540738 LENEPQ9Y5L5 61 aa11.16□□□□□ -0.62
COLCA1-204ENST00000540738 PLCE1Q9P212 2302 aa11.16□□□□□ -0.62
COLCA1-204ENST00000540738 ZNF561-AS1K7EIQ3 104 aa11.16□□□□□ -0.62
COLCA1-204ENST00000540738 K7EMT4 169 aa11.16□□□□□ -0.62
COLCA1-204ENST00000540738 COL5A1-AS1Q5SY13 56 aa11.16□□□□□ -0.62
COLCA1-204ENST00000540738 PLEKHB2Q96CS7 222 aa11.16□□□□□ -0.62
COLCA1-204ENST00000540738 CITED2Q99967 270 aaPredicted RBP11.16□□□□□ -0.62
COLCA1-204ENST00000540738 ATOH7Q8N100 152 aa11.16□□□□□ -0.62
COLCA1-204ENST00000540738 IGHV4OR15-8A0A075B7B6 117 aa11.15□□□□□ -0.62
COLCA1-204ENST00000540738 A0A087WW49 117 aa11.15□□□□□ -0.62
COLCA1-204ENST00000540738 ADMP35318 185 aa11.15□□□□□ -0.62
COLCA1-204ENST00000540738 RHOHQ15669 191 aa11.15□□□□□ -0.62
COLCA1-204ENST00000540738 CD300EQ496F6 205 aaPredicted RBP11.15□□□□□ -0.62
COLCA1-204ENST00000540738 KLK5Q9Y337 293 aaPredicted RBP11.15□□□□□ -0.62
COLCA1-204ENST00000540738 ANXA2RQ3ZCQ2 193 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms