RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 WIPF1O43516 503 aa7.48□□□□□ -1.21
CTNNA1-243ENST00000540387 ASIPP42127 132 aa7.48□□□□□ -1.21
CTNNA1-243ENST00000540387 TMEM78Q5T7P6 136 aa7.48□□□□□ -1.21
CTNNA1-243ENST00000540387 C10orf113Q5VZT2 155 aa7.48□□□□□ -1.21
CTNNA1-243ENST00000540387 SBSPONQ8IVN8 264 aa7.48□□□□□ -1.21
CTNNA1-243ENST00000540387 SRSF12Q8WXF0 261 aaKnown RBP7.48□□□□□ -1.21
CTNNA1-243ENST00000540387 TMEM14BQ9NUH8 114 aa7.48□□□□□ -1.21
CTNNA1-243ENST00000540387 PRNDQ9UKY0 176 aa7.48□□□□□ -1.21
CTNNA1-243ENST00000540387 FOXA2Q9Y261 457 aaPredicted RBP7.48□□□□□ -1.21
CTNNA1-243ENST00000540387 U3KQK5 164 aa7.48□□□□□ -1.21
CTNNA1-243ENST00000540387 ZNF474Q6S9Z5 364 aaPredicted RBP7.48□□□□□ -1.21
CTNNA1-243ENST00000540387 PATE2Q6UY27 113 aa7.48□□□□□ -1.21
CTNNA1-243ENST00000540387 Q71RC1 249 aaPredicted RBP7.48□□□□□ -1.21
CTNNA1-243ENST00000540387 DNAJC30Q96LL9 226 aa7.48□□□□□ -1.21
CTNNA1-243ENST00000540387 PRR14LQ5THK1 2151 aa7.48□□□□□ -1.21
CTNNA1-243ENST00000540387 LINC01549A6NIU2 74 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 H3BVH4 76 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 DPM2O94777 84 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 PLAUP00749 431 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 PRSS1P07477 247 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 WDR86Q86TI4 376 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 ORMDL3Q8N138 153 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 ZNF714Q96N38 554 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 BBC3Q96PG8 261 aaPredicted RBP7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 LINC01587Q99440 93 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 TRAV8-2A0A0B4J237 113 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 IGHV3-64DA0A0J9YX35 117 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 FSTL3O95633 263 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 UBE2D3P61077 147 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 UBE2D2P62837 147 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 RPL39P5Q59GN2 51 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 CXorf67Q86X51 503 aaPredicted RBP7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 AMN1Q8IY45 258 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 Q8IYB0 196 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 S1PR3Q99500 378 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 VKORC1Q9BQB6 163 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 TPPP3Q9BW30 176 aa7.47□□□□□ -1.21
CTNNA1-243ENST00000540387 TNCP24821 2201 aa7.46□□□□□ -1.21
CTNNA1-243ENST00000540387 TRAV8-1A0A0A6YYK1 113 aa7.46□□□□□ -1.21
CTNNA1-243ENST00000540387 MYMXA0A1B0GTQ4 84 aa7.46□□□□□ -1.21
CTNNA1-243ENST00000540387 TCRAP04437 139 aa7.46□□□□□ -1.21
CTNNA1-243ENST00000540387 LINC00694P0DN24 101 aa7.46□□□□□ -1.21
CTNNA1-243ENST00000540387 GLRXP35754 106 aa7.46□□□□□ -1.21
CTNNA1-243ENST00000540387 ZNF493Q6ZR52 646 aa7.46□□□□□ -1.21
CTNNA1-243ENST00000540387 ADGRG4Q8IZF6 3080 aa7.46□□□□□ -1.22
CTNNA1-243ENST00000540387 LOC107984640A0A0U1RRK4 108 aa7.46□□□□□ -1.22
CTNNA1-243ENST00000540387 CCL21O00585 134 aa7.46□□□□□ -1.22
CTNNA1-243ENST00000540387 TCL1BO95988 128 aa7.46□□□□□ -1.22
CTNNA1-243ENST00000540387 SPRNQ5BIV9 151 aa7.46□□□□□ -1.22
CTNNA1-243ENST00000540387 Q86TA4 180 aa7.46□□□□□ -1.22
CTNNA1-243ENST00000540387 OR13A1Q8NGR1 328 aa7.46□□□□□ -1.22
CTNNA1-243ENST00000540387 OR1L4Q8NGR5 311 aa7.46□□□□□ -1.22
CTNNA1-243ENST00000540387 OR1L8Q8NGR8 309 aa7.46□□□□□ -1.22
CTNNA1-243ENST00000540387 OR10J6PQ8NGY7 276 aa7.46□□□□□ -1.22
CTNNA1-243ENST00000540387 FOXC2Q99958 501 aa7.46□□□□□ -1.22
CTNNA1-243ENST00000540387 TMEM160Q9NX00 188 aa7.46□□□□□ -1.22
CTNNA1-243ENST00000540387 TRAV40A0A0B4J280 105 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 NPYP01303 97 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 PRB1P04280 392 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 FAM27E3Q08E93 113 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 TWIST1Q15672 202 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 FAM104BQ5XKR9 115 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 FLYWCH2Q96CP2 140 aaKnown RBP7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 IFI27L2Q9H2X8 130 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 ZNF785A8K8V0 405 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 LINC01619G3V211 115 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 SMKR1H3BMG3 65 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 TFF1P04155 84 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 CD69Q07108 199 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 MRPL51Q4U2R6 128 aaKnown RBP7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 MDP1Q86V88 176 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 TMEM213A2RRL7 107 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 H3BTX0 84 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 LINC00305Q7Z4B0 112 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 DCTN5Q9BTE1 182 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 RTL8AQ9BWD3 113 aa7.45□□□□□ -1.22
CTNNA1-243ENST00000540387 A0A1W2PPI3 338 aa7.44□□□□□ -1.22
CTNNA1-243ENST00000540387 RPL7P18124 248 aaKnown RBP7.44□□□□□ -1.22
CTNNA1-243ENST00000540387 LEPP41159 167 aa7.44□□□□□ -1.22
CTNNA1-243ENST00000540387 KIR2DS2P43631 304 aa7.44□□□□□ -1.22
CTNNA1-243ENST00000540387 TBC1D28Q2M2D7 210 aa7.44□□□□□ -1.22
CTNNA1-243ENST00000540387 C2orf83Q53S99 150 aa7.44□□□□□ -1.22
CTNNA1-243ENST00000540387 LYRM7Q5U5X0 104 aa7.44□□□□□ -1.22
CTNNA1-243ENST00000540387 PRNTQ86SH4 94 aa7.44□□□□□ -1.22
CTNNA1-243ENST00000540387 C21orf62Q9NYP8 219 aa7.44□□□□□ -1.22
CTNNA1-243ENST00000540387 CALYQ9NYX4 217 aa7.44□□□□□ -1.22
CTNNA1-243ENST00000540387 HIVEP3Q5T1R4 2406 aa7.44□□□□□ -1.22
CTNNA1-243ENST00000540387 IGHV3-13P01766 116 aa7.44□□□□□ -1.22
CTNNA1-243ENST00000540387 HOXA4Q00056 320 aaPredicted RBP7.44□□□□□ -1.22
CTNNA1-243ENST00000540387 C22orf34Q6ZV56 151 aa7.44□□□□□ -1.22
CTNNA1-243ENST00000540387 C15orf53Q8NAA6 179 aa7.44□□□□□ -1.22
CTNNA1-243ENST00000540387 TRGV9Q99603 122 aa7.44□□□□□ -1.22
CTNNA1-243ENST00000540387 Q9H3A6 140 aa7.44□□□□□ -1.22
CTNNA1-243ENST00000540387 SCGB1C2P0DMR2 95 aa7.43□□□□□ -1.22
CTNNA1-243ENST00000540387 RNASE2P10153 161 aaKnown RBP7.43□□□□□ -1.22
CTNNA1-243ENST00000540387 GNLYP22749 145 aa7.43□□□□□ -1.22
CTNNA1-243ENST00000540387 PRCDQ00LT1 54 aa7.43□□□□□ -1.22
CTNNA1-243ENST00000540387 C1orf162Q8NEQ5 155 aaPredicted RBP7.43□□□□□ -1.22
CTNNA1-243ENST00000540387 ODF3Q96PU9 254 aa7.43□□□□□ -1.22
CTNNA1-243ENST00000540387 CHCHD5Q9BSY4 110 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms