RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 TMEM238C9JI98 176 aa9.82□□□□□ -0.84
SFSWAP-208ENST00000539506 NPYP01303 97 aa9.82□□□□□ -0.84
SFSWAP-208ENST00000539506 ZNF491Q8N8L2 437 aa9.82□□□□□ -0.84
SFSWAP-208ENST00000539506 OR2K2Q8NGT1 345 aa9.82□□□□□ -0.84
SFSWAP-208ENST00000539506 OTORQ9NRC9 128 aa9.82□□□□□ -0.84
SFSWAP-208ENST00000539506 DPM3Q9P2X0 92 aa9.82□□□□□ -0.84
SFSWAP-208ENST00000539506 IGKV2D-26A0A0A0MRZ7 120 aa9.82□□□□□ -0.84
SFSWAP-208ENST00000539506 NBR2O15453 112 aa9.82□□□□□ -0.84
SFSWAP-208ENST00000539506 SPRY2O43597 315 aa9.82□□□□□ -0.84
SFSWAP-208ENST00000539506 CKS2P33552 79 aa9.82□□□□□ -0.84
SFSWAP-208ENST00000539506 NDPQ00604 133 aa9.82□□□□□ -0.84
SFSWAP-208ENST00000539506 RNF5Q99942 180 aa9.82□□□□□ -0.84
SFSWAP-208ENST00000539506 MS4A6AQ9H2W1 248 aa9.82□□□□□ -0.84
SFSWAP-208ENST00000539506 ZNF492Q9P255 531 aa9.82□□□□□ -0.84
SFSWAP-208ENST00000539506 SPCS1Q9Y6A9 102 aa9.82□□□□□ -0.84
SFSWAP-208ENST00000539506 ITPR1Q14643 2758 aa9.81□□□□□ -0.84
SFSWAP-208ENST00000539506 IGHV3-66A0A0C4DH42 116 aa9.81□□□□□ -0.84
SFSWAP-208ENST00000539506 A0A1W2PPR1 153 aa9.81□□□□□ -0.84
SFSWAP-208ENST00000539506 NPIPB6E9PJ23 425 aa9.81□□□□□ -0.84
SFSWAP-208ENST00000539506 F8W735 103 aaPredicted RBP9.81□□□□□ -0.84
SFSWAP-208ENST00000539506 MRPS12O15235 138 aaKnown RBP9.81□□□□□ -0.84
SFSWAP-208ENST00000539506 FANCD2OSQ96PS1 177 aa9.81□□□□□ -0.84
SFSWAP-208ENST00000539506 TRBV19A0A075B6N1 114 aa9.81□□□□□ -0.84
SFSWAP-208ENST00000539506 ODF3BA8MYP8 253 aa9.81□□□□□ -0.84
SFSWAP-208ENST00000539506 NDUFA3O95167 84 aa9.81□□□□□ -0.84
SFSWAP-208ENST00000539506 C11orf71Q6IPW1 123 aa9.81□□□□□ -0.84
SFSWAP-208ENST00000539506 ZNF414Q96IQ9 312 aa9.81□□□□□ -0.84
SFSWAP-208ENST00000539506 SHANK2-AS3Q9BTD1 123 aa9.81□□□□□ -0.84
SFSWAP-208ENST00000539506 C9orf118A6NHY6 69 aa9.8□□□□□ -0.84
SFSWAP-208ENST00000539506 MRPL51Q4U2R6 128 aaKnown RBP9.8□□□□□ -0.84
SFSWAP-208ENST00000539506 SIGLEC15Q6ZMC9 328 aa9.8□□□□□ -0.84
SFSWAP-208ENST00000539506 GTSCR1Q86UQ5 136 aa9.8□□□□□ -0.84
SFSWAP-208ENST00000539506 NPBQ8NG41 125 aa9.8□□□□□ -0.84
SFSWAP-208ENST00000539506 TMEM189A5PLL7 270 aa9.8□□□□□ -0.84
SFSWAP-208ENST00000539506 H3BRN7 92 aa9.8□□□□□ -0.84
SFSWAP-208ENST00000539506 CT45A10P0DMU9 189 aa9.8□□□□□ -0.84
SFSWAP-208ENST00000539506 COL6A6A6NMZ7 2263 aa9.8□□□□□ -0.84
SFSWAP-208ENST00000539506 PRSS1P07477 247 aa9.8□□□□□ -0.84
SFSWAP-208ENST00000539506 ZFP36P26651 326 aaKnown RBP9.8□□□□□ -0.84
SFSWAP-208ENST00000539506 FXYD2P54710 66 aa9.8□□□□□ -0.84
SFSWAP-208ENST00000539506 CT83Q5H943 113 aa9.8□□□□□ -0.84
SFSWAP-208ENST00000539506 GTSF1LQ9H1H1 148 aa9.8□□□□□ -0.84
SFSWAP-208ENST00000539506 SPTBN4Q9H254 2564 aa9.79□□□□□ -0.84
SFSWAP-208ENST00000539506 SH2D1AO60880 128 aa9.79□□□□□ -0.84
SFSWAP-208ENST00000539506 NDUFS7O75251 213 aa9.79□□□□□ -0.84
SFSWAP-208ENST00000539506 FCER1GP30273 86 aa9.79□□□□□ -0.84
SFSWAP-208ENST00000539506 ZNF80P51504 273 aaPredicted RBP9.79□□□□□ -0.84
SFSWAP-208ENST00000539506 SFTA2Q6UW10 78 aa9.79□□□□□ -0.84
SFSWAP-208ENST00000539506 IFI27L1Q96BM0 104 aa9.79□□□□□ -0.84
SFSWAP-208ENST00000539506 GFRA4Q9GZZ7 299 aa9.79□□□□□ -0.84
SFSWAP-208ENST00000539506 IGHV3-49A0A0A0MS15 119 aa9.79□□□□□ -0.84
SFSWAP-208ENST00000539506 ORM1P02763 201 aa9.79□□□□□ -0.84
SFSWAP-208ENST00000539506 HES1Q14469 280 aa9.79□□□□□ -0.84
SFSWAP-208ENST00000539506 C5orf64Q2M2E5 130 aa9.79□□□□□ -0.84
SFSWAP-208ENST00000539506 GTF2H5Q6ZYL4 71 aa9.79□□□□□ -0.84
SFSWAP-208ENST00000539506 RNF125Q96EQ8 232 aa9.79□□□□□ -0.84
SFSWAP-208ENST00000539506 RAB1BQ9H0U4 201 aa9.79□□□□□ -0.84
SFSWAP-208ENST00000539506 MSRB2Q9Y3D2 182 aa9.79□□□□□ -0.84
SFSWAP-208ENST00000539506 AGRNO00468 2067 aa9.79□□□□□ -0.84
SFSWAP-208ENST00000539506 WI2-2373I1.2A0A1W2PRP0 233 aa9.78□□□□□ -0.84
SFSWAP-208ENST00000539506 SMAD7O15105 426 aaKnown RBP9.78□□□□□ -0.84
SFSWAP-208ENST00000539506 PSG3Q16557 428 aa9.78□□□□□ -0.84
SFSWAP-208ENST00000539506 SRSF8Q9BRL6 282 aaKnown RBP9.78□□□□□ -0.84
SFSWAP-208ENST00000539506 SOX21Q9Y651 276 aaPredicted RBP9.78□□□□□ -0.84
SFSWAP-208ENST00000539506 A6NDN8 102 aa9.78□□□□□ -0.84
SFSWAP-208ENST00000539506 EGR2P11161 476 aaPredicted RBP9.78□□□□□ -0.84
SFSWAP-208ENST00000539506 PRTN3P24158 256 aa9.78□□□□□ -0.84
SFSWAP-208ENST00000539506 ERCC8Q13216 396 aa9.78□□□□□ -0.84
SFSWAP-208ENST00000539506 AMTNQ6UX39 209 aa9.78□□□□□ -0.84
SFSWAP-208ENST00000539506 VGLL1Q99990 258 aa9.78□□□□□ -0.84
SFSWAP-208ENST00000539506 CHD8Q9HCK8 2581 aa9.78□□□□□ -0.84
SFSWAP-208ENST00000539506 IGLV11-55A0A075B6I3 123 aa9.78□□□□□ -0.84
SFSWAP-208ENST00000539506 UFSP1Q6NVU6 142 aa9.78□□□□□ -0.84
SFSWAP-208ENST00000539506 ORMDL3Q8N138 153 aa9.78□□□□□ -0.84
SFSWAP-208ENST00000539506 NHP2Q9NX24 153 aaKnown RBP9.78□□□□□ -0.84
SFSWAP-208ENST00000539506 TEX48A0A1B0GUV7 120 aa9.77□□□□□ -0.85
SFSWAP-208ENST00000539506 SMAGPQ0VAQ4 97 aa9.77□□□□□ -0.85
SFSWAP-208ENST00000539506 Q6ZQT7 251 aa9.77□□□□□ -0.85
SFSWAP-208ENST00000539506 TRAV26-2A0A0B4J265 109 aa9.77□□□□□ -0.85
SFSWAP-208ENST00000539506 K7EP34 96 aa9.77□□□□□ -0.85
SFSWAP-208ENST00000539506 LEPP41159 167 aa9.77□□□□□ -0.85
SFSWAP-208ENST00000539506 SEC11AP67812 179 aa9.77□□□□□ -0.85
SFSWAP-208ENST00000539506 Q5PR19 223 aa9.77□□□□□ -0.85
SFSWAP-208ENST00000539506 FAM104BQ5XKR9 115 aa9.77□□□□□ -0.85
SFSWAP-208ENST00000539506 VMO1Q7Z5L0 202 aa9.77□□□□□ -0.85
SFSWAP-208ENST00000539506 TMEM160Q9NX00 188 aa9.77□□□□□ -0.85
SFSWAP-208ENST00000539506 ADAMTSL5Q6ZMM2 481 aa9.76□□□□□ -0.85
SFSWAP-208ENST00000539506 BOD1L2Q8IYS8 172 aa9.76□□□□□ -0.85
SFSWAP-208ENST00000539506 NCBP2LA6PVI3 153 aaKnown RBP9.76□□□□□ -0.85
SFSWAP-208ENST00000539506 G3V4G9 280 aa9.76□□□□□ -0.85
SFSWAP-208ENST00000539506 H3BRM9 83 aa9.76□□□□□ -0.85
SFSWAP-208ENST00000539506 M0R1W7 72 aa9.76□□□□□ -0.85
SFSWAP-208ENST00000539506 SAMD5Q5TGI4 173 aa9.76□□□□□ -0.85
SFSWAP-208ENST00000539506 KLK15Q9H2R5 256 aa9.76□□□□□ -0.85
SFSWAP-208ENST00000539506 A0A1W2PPM0 123 aa9.76□□□□□ -0.85
SFSWAP-208ENST00000539506 K7EQM0 130 aa9.76□□□□□ -0.85
SFSWAP-208ENST00000539506 HBDP02042 147 aa9.76□□□□□ -0.85
SFSWAP-208ENST00000539506 ZNF562Q6V9R5 426 aa9.76□□□□□ -0.85
SFSWAP-208ENST00000539506 SH2D6Q7Z4S9 175 aa9.76□□□□□ -0.85
SFSWAP-208ENST00000539506 Q8N6K4 173 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms