RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 ZC2HC1BQ5TFG8 222 aa8.8□□□□□ -1
SYNE1-237ENST00000539504 TNFRSF6BO95407 300 aa8.79□□□□□ -1
SYNE1-237ENST00000539504 IGKCP01834 107 aa8.79□□□□□ -1
SYNE1-237ENST00000539504 ERCC8Q13216 396 aa8.79□□□□□ -1
SYNE1-237ENST00000539504 KLRD1Q13241 179 aa8.79□□□□□ -1
SYNE1-237ENST00000539504 TMEM158Q8WZ71 300 aa8.79□□□□□ -1
SYNE1-237ENST00000539504 DPM3Q9P2X0 92 aa8.79□□□□□ -1
SYNE1-237ENST00000539504 UFC1Q9Y3C8 167 aa8.79□□□□□ -1
SYNE1-237ENST00000539504 IGHV3OR16-13A0A075B7E8 117 aa8.79□□□□□ -1
SYNE1-237ENST00000539504 IGHV3-74A0A0B4J1X5 117 aa8.79□□□□□ -1
SYNE1-237ENST00000539504 PIP4P1Q86T03 277 aa8.79□□□□□ -1
SYNE1-237ENST00000539504 RNF5Q99942 180 aa8.79□□□□□ -1
SYNE1-237ENST00000539504 PTPRZ1P23471 2315 aaPredicted RBP8.79□□□□□ -1
SYNE1-237ENST00000539504 IGHV3-66A0A0C4DH42 116 aa8.78□□□□□ -1
SYNE1-237ENST00000539504 FABP5P3A8MUU1 101 aa8.78□□□□□ -1
SYNE1-237ENST00000539504 SHISA9B4DS77 424 aa8.78□□□□□ -1
SYNE1-237ENST00000539504 CD3EP07766 207 aa8.78□□□□□ -1
SYNE1-237ENST00000539504 TMEM190Q8WZ59 177 aa8.78□□□□□ -1
SYNE1-237ENST00000539504 SRSF8Q9BRL6 282 aaKnown RBP8.78□□□□□ -1
SYNE1-237ENST00000539504 ARHGAP32A7KAX9 2087 aa8.78□□□□□ -1
SYNE1-237ENST00000539504 SCGB2A1O75556 95 aa8.78□□□□□ -1
SYNE1-237ENST00000539504 LY6HO94772 140 aa8.78□□□□□ -1
SYNE1-237ENST00000539504 NXT2Q9NPJ8 142 aaKnown RBP8.78□□□□□ -1
SYNE1-237ENST00000539504 TEX48A0A1B0GUV7 120 aa8.78□□□□□ -1
SYNE1-237ENST00000539504 ODF1Q14990 250 aa8.78□□□□□ -1
SYNE1-237ENST00000539504 ARPC1AQ92747 370 aa8.78□□□□□ -1
SYNE1-237ENST00000539504 B9A039 149 aa8.77□□□□□ -1
SYNE1-237ENST00000539504 DPM2O94777 84 aa8.77□□□□□ -1
SYNE1-237ENST00000539504 CEACAM3P40198 252 aa8.77□□□□□ -1
SYNE1-237ENST00000539504 C5orf64Q2M2E5 130 aa8.77□□□□□ -1
SYNE1-237ENST00000539504 FANCD2OSQ96PS1 177 aa8.77□□□□□ -1
SYNE1-237ENST00000539504 TRAV40A0A0B4J280 105 aa8.77□□□□□ -1.01
SYNE1-237ENST00000539504 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-237ENST00000539504 TMEM8BA6NDV4 472 aa8.77□□□□□ -1.01
SYNE1-237ENST00000539504 GOSR1O95249 250 aa8.77□□□□□ -1.01
SYNE1-237ENST00000539504 NEGR1Q7Z3B1 354 aa8.77□□□□□ -1.01
SYNE1-237ENST00000539504 MYOZ3Q8TDC0 251 aa8.77□□□□□ -1.01
SYNE1-237ENST00000539504 TRBV25-1A0A075B6N4 114 aa8.77□□□□□ -1.01
SYNE1-237ENST00000539504 SPTBN1Q01082 2364 aaKnown RBP8.76□□□□□ -1.01
SYNE1-237ENST00000539504 IGLC6P0CF74 106 aa8.76□□□□□ -1.01
SYNE1-237ENST00000539504 RNF182Q8N6D2 247 aa8.76□□□□□ -1.01
SYNE1-237ENST00000539504 LINC01560Q8TB33 94 aa8.76□□□□□ -1.01
SYNE1-237ENST00000539504 RNF185Q96GF1 192 aa8.76□□□□□ -1.01
SYNE1-237ENST00000539504 GTSF1LQ9H1H1 148 aa8.76□□□□□ -1.01
SYNE1-237ENST00000539504 KALRNO60229 2985 aa8.76□□□□□ -1.01
SYNE1-237ENST00000539504 IGHV3-49A0A0A0MS15 119 aa8.76□□□□□ -1.01
SYNE1-237ENST00000539504 SAMD13Q5VXD3 122 aa8.76□□□□□ -1.01
SYNE1-237ENST00000539504 ZNF562Q6V9R5 426 aa8.76□□□□□ -1.01
SYNE1-237ENST00000539504 LAMA5O15230 3695 aa8.76□□□□□ -1.01
SYNE1-237ENST00000539504 SMIM17P0DL12 118 aa8.76□□□□□ -1.01
SYNE1-237ENST00000539504 PAX8Q06710 450 aa8.76□□□□□ -1.01
SYNE1-237ENST00000539504 DTX2Q86UW9 622 aa8.76□□□□□ -1.01
SYNE1-237ENST00000539504 DYNAPQ8N1N2 210 aa8.76□□□□□ -1.01
SYNE1-237ENST00000539504 IGLV11-55A0A075B6I3 123 aa8.75□□□□□ -1.01
SYNE1-237ENST00000539504 PRAC2D3DTV9 90 aa8.75□□□□□ -1.01
SYNE1-237ENST00000539504 NDUFA3O95167 84 aa8.75□□□□□ -1.01
SYNE1-237ENST00000539504 MRPL35Q9NZE8 188 aaKnown RBP8.75□□□□□ -1.01
SYNE1-237ENST00000539504 CUL9Q8IWT3 2517 aa8.75□□□□□ -1.01
SYNE1-237ENST00000539504 TRAV26-2A0A0B4J265 109 aa8.75□□□□□ -1.01
SYNE1-237ENST00000539504 ZNF207O43670 478 aaKnown RBP8.75□□□□□ -1.01
SYNE1-237ENST00000539504 IL17RELQ6ZVW7 336 aa8.75□□□□□ -1.01
SYNE1-237ENST00000539504 HIST1H4GQ99525 98 aa8.75□□□□□ -1.01
SYNE1-237ENST00000539504 KLK15Q9H2R5 256 aa8.75□□□□□ -1.01
SYNE1-237ENST00000539504 TACC2O95359 2948 aa8.75□□□□□ -1.01
SYNE1-237ENST00000539504 ATP5LO75964 103 aa8.75□□□□□ -1.01
SYNE1-237ENST00000539504 NDPQ00604 133 aa8.75□□□□□ -1.01
SYNE1-237ENST00000539504 SMAGPQ0VAQ4 97 aa8.75□□□□□ -1.01
SYNE1-237ENST00000539504 MTURNQ8N3F0 131 aa8.75□□□□□ -1.01
SYNE1-237ENST00000539504 HHLA3Q9XRX5 114 aa8.75□□□□□ -1.01
SYNE1-237ENST00000539504 LY6LH3BQJ8 138 aa8.74□□□□□ -1.01
SYNE1-237ENST00000539504 ZNF672Q499Z4 452 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-237ENST00000539504 ANKRD11Q6UB99 2663 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-237ENST00000539504 J3KRW8 73 aa8.74□□□□□ -1.01
SYNE1-237ENST00000539504 ECSCRQ19T08 205 aa8.74□□□□□ -1.01
SYNE1-237ENST00000539504 ZNF479Q96JC4 524 aa8.74□□□□□ -1.01
SYNE1-237ENST00000539504 SCGB2A2Q13296 93 aa8.74□□□□□ -1.01
SYNE1-237ENST00000539504 SPANXN1Q5VSR9 72 aa8.74□□□□□ -1.01
SYNE1-237ENST00000539504 CEND1Q8N111 149 aa8.74□□□□□ -1.01
SYNE1-237ENST00000539504 CFHR4Q92496 578 aa8.74□□□□□ -1.01
SYNE1-237ENST00000539504 SMAD5-AS1Q9Y6J3 95 aa8.74□□□□□ -1.01
SYNE1-237ENST00000539504 ANKHD1Q8IWZ3 2542 aaKnown RBP8.74□□□□□ -1.01
SYNE1-237ENST00000539504 J3QR89 54 aa8.73□□□□□ -1.01
SYNE1-237ENST00000539504 TRGV3P03979 118 aa8.73□□□□□ -1.01
SYNE1-237ENST00000539504 CTSGP08311 255 aa8.73□□□□□ -1.01
SYNE1-237ENST00000539504 PSMG4Q5JS54 123 aa8.73□□□□□ -1.01
SYNE1-237ENST00000539504 ZZEF1O43149 2961 aa8.73□□□□□ -1.01
SYNE1-237ENST00000539504 FAM90A27PA6NNH2 459 aa8.73□□□□□ -1.01
SYNE1-237ENST00000539504 AMTNQ6UX39 209 aa8.73□□□□□ -1.01
SYNE1-237ENST00000539504 TTC9CQ8N5M4 171 aa8.73□□□□□ -1.01
SYNE1-237ENST00000539504 Q8N8P6 123 aa8.73□□□□□ -1.01
SYNE1-237ENST00000539504 HIGD1BQ9P298 99 aa8.73□□□□□ -1.01
SYNE1-237ENST00000539504 F8W735 103 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-237ENST00000539504 EFNA4P52798 201 aa8.73□□□□□ -1.01
SYNE1-237ENST00000539504 WFDC2Q14508 124 aa8.73□□□□□ -1.01
SYNE1-237ENST00000539504 HIF1ANQ9NWT6 349 aa8.73□□□□□ -1.01
SYNE1-237ENST00000539504 SMPXQ9UHP9 88 aa8.73□□□□□ -1.01
SYNE1-237ENST00000539504 H3BMG7 143 aa8.72□□□□□ -1.01
SYNE1-237ENST00000539504 PRR30Q53SZ7 412 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-237ENST00000539504 TIMD4Q96H15 378 aa8.72□□□□□ -1.01
SYNE1-237ENST00000539504 TMEM78Q5T7P6 136 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms