RNA–Protein interactions for RNA: ENST00000538696.5

CLN6-202, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2 BASIC

Gene CLN6, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-202ENST00000538696 B4DEV8 164 aa12.87□□□□□ -0.35
CLN6-202ENST00000538696 PRAC2D3DTV9 90 aa12.87□□□□□ -0.35
CLN6-202ENST00000538696 IGKV2D-40P01614 121 aaPredicted RBP12.87□□□□□ -0.35
CLN6-202ENST00000538696 S100A9P06702 114 aaKnown RBP12.87□□□□□ -0.35
CLN6-202ENST00000538696 TFPI2P48307 235 aa12.87□□□□□ -0.35
CLN6-202ENST00000538696 KPRPQ5T749 579 aaPredicted RBP12.87□□□□□ -0.35
CLN6-202ENST00000538696 BAGE2Q86Y30 109 aa12.87□□□□□ -0.35
CLN6-202ENST00000538696 TMEM75Q8N9X5 138 aa12.87□□□□□ -0.35
CLN6-202ENST00000538696 DNAH3Q8TD57 4116 aa12.86□□□□□ -0.35
CLN6-202ENST00000538696 A0A087WWC5 75 aa12.86□□□□□ -0.35
CLN6-202ENST00000538696 TRBV6-1A0A0K0K1D8 114 aa12.86□□□□□ -0.35
CLN6-202ENST00000538696 OR5I1Q13606 314 aa12.86□□□□□ -0.35
CLN6-202ENST00000538696 ARL6IP6Q8N6S5 226 aa12.86□□□□□ -0.35
CLN6-202ENST00000538696 ASCL2Q99929 193 aa12.86□□□□□ -0.35
CLN6-202ENST00000538696 ZNF256Q9Y2P7 627 aaPredicted RBP12.86□□□□□ -0.35
CLN6-202ENST00000538696 TRAV2A0A0B4J234 112 aa12.85□□□□□ -0.35
CLN6-202ENST00000538696 K7EQG2 157 aa12.85□□□□□ -0.35
CLN6-202ENST00000538696 LTAP01374 205 aa12.85□□□□□ -0.35
CLN6-202ENST00000538696 MGST1P10620 155 aaKnown RBP12.85□□□□□ -0.35
CLN6-202ENST00000538696 PSG3Q16557 428 aa12.85□□□□□ -0.35
CLN6-202ENST00000538696 PRNTQ86SH4 94 aa12.85□□□□□ -0.35
CLN6-202ENST00000538696 WFDC3Q8IUB2 231 aa12.85□□□□□ -0.35
CLN6-202ENST00000538696 FAM24BQ8N5W8 94 aa12.85□□□□□ -0.35
CLN6-202ENST00000538696 DCANP1Q8TF63 244 aa12.85□□□□□ -0.35
CLN6-202ENST00000538696 MRPL53Q96EL3 112 aaKnown RBP12.85□□□□□ -0.35
CLN6-202ENST00000538696 SMCO4Q9NRQ5 59 aa12.85□□□□□ -0.35
CLN6-202ENST00000538696 SERTM2A0A1B0GWG4 89 aa12.84□□□□□ -0.35
CLN6-202ENST00000538696 OR4C46A6NHA9 309 aa12.84□□□□□ -0.35
CLN6-202ENST00000538696 K7EQM0 130 aa12.84□□□□□ -0.35
CLN6-202ENST00000538696 GCGP01275 180 aa12.84□□□□□ -0.35
CLN6-202ENST00000538696 PAFAH1B2P68402 229 aa12.84□□□□□ -0.35
CLN6-202ENST00000538696 FLI1Q01543 452 aaPredicted RBP12.84□□□□□ -0.35
CLN6-202ENST00000538696 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.84□□□□□ -0.35
CLN6-202ENST00000538696 PRR25Q96S07 402 aa12.84□□□□□ -0.35
CLN6-202ENST00000538696 PSG8Q9UQ74 426 aa12.84□□□□□ -0.35
CLN6-202ENST00000538696 MT-ND4LP03901 98 aa12.83□□□□□ -0.36
CLN6-202ENST00000538696 VGLL1Q99990 258 aa12.83□□□□□ -0.36
CLN6-202ENST00000538696 CTDSP1Q9GZU7 261 aa12.83□□□□□ -0.36
CLN6-202ENST00000538696 H7BYZ3 331 aa12.82□□□□□ -0.36
CLN6-202ENST00000538696 CD7P09564 240 aa12.82□□□□□ -0.36
CLN6-202ENST00000538696 ERCC8Q13216 396 aa12.82□□□□□ -0.36
CLN6-202ENST00000538696 ZNF738Q8NE65 137 aa12.82□□□□□ -0.36
CLN6-202ENST00000538696 SFRP2Q96HF1 295 aa12.82□□□□□ -0.36
CLN6-202ENST00000538696 MLST8Q9BVC4 326 aa12.82□□□□□ -0.36
CLN6-202ENST00000538696 CLEC5AQ9NY25 188 aa12.82□□□□□ -0.36
CLN6-202ENST00000538696 ZMAT5Q9UDW3 170 aaKnown RBP12.82□□□□□ -0.36
CLN6-202ENST00000538696 ODF3L2Q3SX64 289 aa12.81□□□□□ -0.36
CLN6-202ENST00000538696 OR10G8Q8NGN5 311 aa12.81□□□□□ -0.36
CLN6-202ENST00000538696 Q8TAT8 98 aa12.81□□□□□ -0.36
CLN6-202ENST00000538696 NOTCH1P46531 2555 aa12.8□□□□□ -0.36
CLN6-202ENST00000538696 ZNF688P0C7X2 276 aa12.8□□□□□ -0.36
CLN6-202ENST00000538696 DEFB1P60022 68 aa12.8□□□□□ -0.36
CLN6-202ENST00000538696 TMEM183AQ8IXX5 376 aa12.8□□□□□ -0.36
CLN6-202ENST00000538696 ANAPC16Q96DE5 110 aa12.8□□□□□ -0.36
CLN6-202ENST00000538696 SMIM12Q96EX1 92 aa12.8□□□□□ -0.36
CLN6-202ENST00000538696 RNASE7Q9H1E1 156 aaKnown RBP12.8□□□□□ -0.36
CLN6-202ENST00000538696 MAP6D1Q9H9H5 199 aa12.8□□□□□ -0.36
CLN6-202ENST00000538696 C19orf73Q9NVV2 129 aa12.8□□□□□ -0.36
CLN6-202ENST00000538696 RBAKDNA6NC62 111 aa12.79□□□□□ -0.36
CLN6-202ENST00000538696 PRB2P02812 416 aaPredicted RBP12.79□□□□□ -0.36
CLN6-202ENST00000538696 ID1P41134 155 aa12.79□□□□□ -0.36
CLN6-202ENST00000538696 SAMD13Q5VXD3 122 aa12.79□□□□□ -0.36
CLN6-202ENST00000538696 PRR27Q6MZM9 219 aa12.79□□□□□ -0.36
CLN6-202ENST00000538696 GTSCR1Q86UQ5 136 aa12.79□□□□□ -0.36
CLN6-202ENST00000538696 C8orf49Q96NF6 230 aa12.79□□□□□ -0.36
CLN6-202ENST00000538696 YPEL4Q96NS1 127 aa12.79□□□□□ -0.36
CLN6-202ENST00000538696 WFDC10AQ9H1F0 79 aa12.79□□□□□ -0.36
CLN6-202ENST00000538696 TUBA4BQ9H853 241 aa12.79□□□□□ -0.36
CLN6-202ENST00000538696 TMEM242Q9NWH2 141 aa12.79□□□□□ -0.36
CLN6-202ENST00000538696 ZFP30Q9Y2G7 519 aa12.79□□□□□ -0.36
CLN6-202ENST00000538696 FBLL1A6NHQ2 334 aaKnown RBP12.78□□□□□ -0.36
CLN6-202ENST00000538696 PPP1R2P9O14990 202 aa12.78□□□□□ -0.36
CLN6-202ENST00000538696 ERVFC1-1P60608 527 aa12.78□□□□□ -0.36
CLN6-202ENST00000538696 LINC00322Q6ZN03 302 aaPredicted RBP12.78□□□□□ -0.36
CLN6-202ENST00000538696 Q8N1Y9 231 aa12.78□□□□□ -0.36
CLN6-202ENST00000538696 ZC2HC1AQ96GY0 325 aa12.78□□□□□ -0.36
CLN6-202ENST00000538696 AGPAT4-IT1Q9H0P7 198 aa12.78□□□□□ -0.36
CLN6-202ENST00000538696 OSTCQ9NRP0 149 aa12.78□□□□□ -0.36
CLN6-202ENST00000538696 ZNF492Q9P255 531 aa12.78□□□□□ -0.36
CLN6-202ENST00000538696 ZNF705DP0CH99 300 aaPredicted RBP12.77□□□□□ -0.37
CLN6-202ENST00000538696 ZNF705BP0CI00 300 aaPredicted RBP12.77□□□□□ -0.37
CLN6-202ENST00000538696 DEFB131AP59861 70 aa12.77□□□□□ -0.37
CLN6-202ENST00000538696 PSMG4Q5JS54 123 aa12.77□□□□□ -0.37
CLN6-202ENST00000538696 URGCP-MRPS24S4R325 110 aa12.77□□□□□ -0.37
CLN6-202ENST00000538696 V9GYV3 84 aa12.77□□□□□ -0.37
CLN6-202ENST00000538696 NBEAL1Q6ZS30 2694 aa12.77□□□□□ -0.37
CLN6-202ENST00000538696 CXorf65A6NEN9 183 aa12.76□□□□□ -0.37
CLN6-202ENST00000538696 COLCA2A8K830 154 aa12.76□□□□□ -0.37
CLN6-202ENST00000538696 OR11H12B2RN74 326 aa12.76□□□□□ -0.37
CLN6-202ENST00000538696 F6UB75 175 aa12.76□□□□□ -0.37
CLN6-202ENST00000538696 SNRPD3P62318 126 aaKnown RBP12.76□□□□□ -0.37
CLN6-202ENST00000538696 ZNF124Q15973 351 aa12.76□□□□□ -0.37
CLN6-202ENST00000538696 IBA57Q5T440 356 aaKnown RBP12.76□□□□□ -0.37
CLN6-202ENST00000538696 C9orf47Q6ZRZ4 202 aa12.76□□□□□ -0.37
CLN6-202ENST00000538696 FAM231DQ6ZW35 169 aa12.76□□□□□ -0.37
CLN6-202ENST00000538696 C15orf54Q8N8G6 183 aa12.76□□□□□ -0.37
CLN6-202ENST00000538696 FAM110AQ9BQ89 295 aa12.76□□□□□ -0.37
CLN6-202ENST00000538696 NUDT10Q8NFP7 164 aa12.75□□□□□ -0.37
CLN6-202ENST00000538696 OR8A1Q8NGG7 326 aa12.75□□□□□ -0.37
CLN6-202ENST00000538696 NUDT11Q96G61 164 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms