RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 WNK2Q9Y3S1 2297 aa11.04□□□□□ -0.64
LIG1-203ENST00000536218 C12orf74Q32Q52 190 aa11.04□□□□□ -0.64
LIG1-203ENST00000536218 PRNTQ86SH4 94 aa11.04□□□□□ -0.64
LIG1-203ENST00000536218 FXYD5Q96DB9 178 aa11.04□□□□□ -0.64
LIG1-203ENST00000536218 UPK2O00526 184 aa11.04□□□□□ -0.64
LIG1-203ENST00000536218 RIGQ13278 110 aa11.04□□□□□ -0.64
LIG1-203ENST00000536218 PTH2Q96A98 100 aa11.04□□□□□ -0.64
LIG1-203ENST00000536218 FOXA2Q9Y261 457 aaPredicted RBP11.04□□□□□ -0.64
LIG1-203ENST00000536218 HBDP02042 147 aa11.04□□□□□ -0.64
LIG1-203ENST00000536218 LINC00305Q7Z4B0 112 aa11.04□□□□□ -0.64
LIG1-203ENST00000536218 PRO0461Q9UI25 63 aa11.04□□□□□ -0.64
LIG1-203ENST00000536218 C19orf71A6NCJ1 209 aa11.03□□□□□ -0.64
LIG1-203ENST00000536218 TNFRSF13BO14836 293 aaPredicted RBP11.03□□□□□ -0.64
LIG1-203ENST00000536218 RPL32P62910 135 aaKnown RBP11.03□□□□□ -0.64
LIG1-203ENST00000536218 CT83Q5H943 113 aa11.03□□□□□ -0.64
LIG1-203ENST00000536218 C10orf55Q5SWW7 151 aa11.03□□□□□ -0.64
LIG1-203ENST00000536218 MLST8Q9BVC4 326 aa11.03□□□□□ -0.64
LIG1-203ENST00000536218 HIF1ANQ9NWT6 349 aa11.03□□□□□ -0.64
LIG1-203ENST00000536218 PRNDQ9UKY0 176 aa11.03□□□□□ -0.64
LIG1-203ENST00000536218 PRSS1P07477 247 aa11.03□□□□□ -0.64
LIG1-203ENST00000536218 COX7A1P24310 79 aa11.03□□□□□ -0.64
LIG1-203ENST00000536218 ZFAND6Q6FIF0 208 aa11.03□□□□□ -0.64
LIG1-203ENST00000536218 ZNF833PQ6ZTB9 187 aa11.03□□□□□ -0.64
LIG1-203ENST00000536218 NFE4Q86UQ8 179 aa11.03□□□□□ -0.64
LIG1-203ENST00000536218 TEX29Q8N6K0 151 aa11.03□□□□□ -0.64
LIG1-203ENST00000536218 HIST1H4GQ99525 98 aa11.03□□□□□ -0.64
LIG1-203ENST00000536218 NAV3Q8IVL0 2385 aa11.02□□□□□ -0.64
LIG1-203ENST00000536218 TRBV20-1A0A075B6N2 111 aa11.02□□□□□ -0.64
LIG1-203ENST00000536218 NPIPB5A8MRT5 1133 aa11.02□□□□□ -0.64
LIG1-203ENST00000536218 NDUFS7O75251 213 aa11.02□□□□□ -0.64
LIG1-203ENST00000536218 APELAP0DMC3 54 aa11.02□□□□□ -0.64
LIG1-203ENST00000536218 C1orf122Q6ZSJ8 110 aa11.02□□□□□ -0.64
LIG1-203ENST00000536218 GFRA4Q9GZZ7 299 aa11.02□□□□□ -0.64
LIG1-203ENST00000536218 TMSB15BA0A087X1C1 80 aa11.02□□□□□ -0.65
LIG1-203ENST00000536218 E7EUB6 86 aa11.02□□□□□ -0.65
LIG1-203ENST00000536218 PATE2Q6UY27 113 aa11.02□□□□□ -0.65
LIG1-203ENST00000536218 RITA1Q96K30 269 aa11.02□□□□□ -0.65
LIG1-203ENST00000536218 SCGB2A1O75556 95 aa11.02□□□□□ -0.65
LIG1-203ENST00000536218 IGHV1-8P0DP01 117 aa11.02□□□□□ -0.65
LIG1-203ENST00000536218 ZNF672Q499Z4 452 aaPredicted RBP11.02□□□□□ -0.65
LIG1-203ENST00000536218 NPIPB3Q92617 1050 aa11.02□□□□□ -0.65
LIG1-203ENST00000536218 FAM110AQ9BQ89 295 aa11.02□□□□□ -0.65
LIG1-203ENST00000536218 ASH1LQ9NR48 2969 aaKnown RBP11.01□□□□□ -0.65
LIG1-203ENST00000536218 SMKR1H3BMG3 65 aa11.01□□□□□ -0.65
LIG1-203ENST00000536218 TMEM155Q4W5P6 130 aa11.01□□□□□ -0.65
LIG1-203ENST00000536218 CRYGCP07315 174 aa11.01□□□□□ -0.65
LIG1-203ENST00000536218 RRN3P1Q2M238 152 aa11.01□□□□□ -0.65
LIG1-203ENST00000536218 AMN1Q8IY45 258 aa11.01□□□□□ -0.65
LIG1-203ENST00000536218 OR1L4Q8NGR5 311 aa11.01□□□□□ -0.65
LIG1-203ENST00000536218 BRI3O95415 125 aa11□□□□□ -0.65
LIG1-203ENST00000536218 CD69Q07108 199 aa11□□□□□ -0.65
LIG1-203ENST00000536218 TMEM30BQ3MIR4 351 aa11□□□□□ -0.65
LIG1-203ENST00000536218 HIGD1BQ9P298 99 aa11□□□□□ -0.65
LIG1-203ENST00000536218 LOC107984156A0A0G2JMH3 177 aa11□□□□□ -0.65
LIG1-203ENST00000536218 ARL3P36405 182 aa11□□□□□ -0.65
LIG1-203ENST00000536218 PRCDQ00LT1 54 aa11□□□□□ -0.65
LIG1-203ENST00000536218 POU2AF1Q16633 256 aa11□□□□□ -0.65
LIG1-203ENST00000536218 Q6AWC8 147 aa11□□□□□ -0.65
LIG1-203ENST00000536218 ZNF562Q6V9R5 426 aa11□□□□□ -0.65
LIG1-203ENST00000536218 ARL17AQ8IVW1 177 aa11□□□□□ -0.65
LIG1-203ENST00000536218 IGFBPL1Q8WX77 278 aa11□□□□□ -0.65
LIG1-203ENST00000536218 FMC1Q96HJ9 113 aa11□□□□□ -0.65
LIG1-203ENST00000536218 TPSG1Q9NRR2 321 aa11□□□□□ -0.65
LIG1-203ENST00000536218 ZNF492Q9P255 531 aa11□□□□□ -0.65
LIG1-203ENST00000536218 KAAG1Q9UBP8 84 aa11□□□□□ -0.65
LIG1-203ENST00000536218 DLL1O00548 723 aa11□□□□□ -0.65
LIG1-203ENST00000536218 PSMB2P49721 201 aa11□□□□□ -0.65
LIG1-203ENST00000536218 ZC2HC1BQ5TFG8 222 aa11□□□□□ -0.65
LIG1-203ENST00000536218 TCRAP04437 139 aa10.99□□□□□ -0.65
LIG1-203ENST00000536218 DLX6P56179 175 aa10.99□□□□□ -0.65
LIG1-203ENST00000536218 GOLT1AQ6ZVE7 132 aa10.99□□□□□ -0.65
LIG1-203ENST00000536218 OR4C13Q8NGP0 309 aa10.99□□□□□ -0.65
LIG1-203ENST00000536218 TMEM133Q9H2Q1 129 aa10.99□□□□□ -0.65
LIG1-203ENST00000536218 KLF12Q9Y4X4 402 aa10.99□□□□□ -0.65
LIG1-203ENST00000536218 AGRNO00468 2067 aa10.99□□□□□ -0.65
LIG1-203ENST00000536218 FBXL19-AS1Q494R0 122 aa10.99□□□□□ -0.65
LIG1-203ENST00000536218 TMEM160Q9NX00 188 aa10.99□□□□□ -0.65
LIG1-203ENST00000536218 ONECUT1Q9UBC0 465 aa10.99□□□□□ -0.65
LIG1-203ENST00000536218 PKD1L2Q7Z442 2459 aa10.99□□□□□ -0.65
LIG1-203ENST00000536218 SVEP1Q4LDE5 3571 aa10.99□□□□□ -0.65
LIG1-203ENST00000536218 HRNRQ86YZ3 2850 aaPredicted RBP10.98□□□□□ -0.65
LIG1-203ENST00000536218 TMEM213A2RRL7 107 aa10.98□□□□□ -0.65
LIG1-203ENST00000536218 Q9H3A6 140 aa10.98□□□□□ -0.65
LIG1-203ENST00000536218 CCDC179H3BU77 68 aa10.98□□□□□ -0.65
LIG1-203ENST00000536218 RNASE2P10153 161 aaKnown RBP10.98□□□□□ -0.65
LIG1-203ENST00000536218 KIR2DL4Q99706 377 aa10.98□□□□□ -0.65
LIG1-203ENST00000536218 ITPR1Q14643 2758 aa10.98□□□□□ -0.65
LIG1-203ENST00000536218 LINC01548A6NM66 108 aa10.98□□□□□ -0.65
LIG1-203ENST00000536218 CT45A10P0DMU9 189 aa10.98□□□□□ -0.65
LIG1-203ENST00000536218 CNTFRP26992 372 aa10.98□□□□□ -0.65
LIG1-203ENST00000536218 MYCNOSP40205 109 aa10.98□□□□□ -0.65
LIG1-203ENST00000536218 ORMDL3Q8N138 153 aa10.98□□□□□ -0.65
LIG1-203ENST00000536218 H3BVH4 76 aa10.97□□□□□ -0.65
LIG1-203ENST00000536218 TGFAP01135 160 aa10.97□□□□□ -0.65
LIG1-203ENST00000536218 SMCPP49901 116 aaPredicted RBP10.97□□□□□ -0.65
LIG1-203ENST00000536218 OR1L8Q8NGR8 309 aa10.97□□□□□ -0.65
LIG1-203ENST00000536218 FOXC2Q99958 501 aa10.97□□□□□ -0.65
LIG1-203ENST00000536218 ERHP84090 104 aaKnown RBP10.97□□□□□ -0.65
LIG1-203ENST00000536218 MAPKAPK5-AS1Q8N8E1 139 aa10.97□□□□□ -0.65
LIG1-203ENST00000536218 IGKCP01834 107 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms