RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 CD5P06127 495 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 IFI30P13284 250 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 GZMHP20718 246 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 S100A3P33764 101 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 KDELR2P33947 212 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 TPM4P67936 248 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 HBG1P69891 147 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 HBG2P69892 147 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 RAB31Q13636 194 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 WFDC2Q14508 124 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 TMEM241Q24JQ0 296 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 UBE2NLQ5JXB2 153 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 RBM48Q5RL73 367 aaKnown RBP1.97□□□□□ -2.09
CD44-235ENST00000532339 NXNL2Q5VZ03 156 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 ERICH5Q6P6B1 374 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 SPINT4Q6UDR6 99 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 IGFL1Q6UW32 110 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 RNASEH2CQ8TDP1 164 aaKnown RBP1.97□□□□□ -2.09
CD44-235ENST00000532339 TWIST2Q8WVJ9 160 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 RMI2Q96E14 147 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 YPEL4Q96NS1 127 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 PHB2Q99623 299 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 KRTAP2-1Q9BYU5 128 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 SLC25A31Q9H0C2 315 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 TPT1P8Q9HAU6 139 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 RHOFQ9HBH0 211 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 TMEM216Q9P0N5 145 aa1.97□□□□□ -2.09
CD44-235ENST00000532339 TRAV8-3A0A0A6YYJ7 113 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 A0A0J9YY99 117 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 PGPA6NDG6 321 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 OR5H14A6NHG9 310 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 KNCNA6PVL3 124 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 EFCAB9A8MZ26 197 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 M0R2T5 61 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 HRASP01112 189 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 KRASP01116 189 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 IGKV1D-12P01611 117 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 LIMS3P0CW19 117 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 LIMS4P0CW20 117 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 APELAP0DMC3 54 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 PLTPP55058 493 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 TAS2R41P59536 307 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 RBX1P62877 108 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 CDK6Q00534 326 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 EMX2Q04743 252 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 FADDQ13158 208 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 RRN3P1Q2M238 152 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 CLVS2Q5SYC1 327 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 OGFRL1Q5TC84 451 aaPredicted RBP1.96□□□□□ -2.1
CD44-235ENST00000532339 TMEM42Q69YG0 159 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 ZNF833PQ6ZTB9 187 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 SLC25A26Q70HW3 274 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 OR8A1Q8NGG7 326 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 OR4D11Q8NGI4 311 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 OR4C16Q8NGL9 310 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 FXYD5Q96DB9 178 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 MRAP2Q96G30 205 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 PGLYRP3Q96LB9 341 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 FAM210AQ96ND0 272 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 LINC01587Q99440 93 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 LINC00467Q9BRT7 94 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 RHPN1-AS1Q9BWJ2 59 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 MS4A6AQ9H2W1 248 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 SMPXQ9UHP9 88 aa1.96□□□□□ -2.1
CD44-235ENST00000532339 A0A096LPF7 62 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 TRBV7-1A0A0A6YYK4 115 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 IGHV3-43A0A0B4J1X8 118 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 DHRS12A0PJE2 317 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 C15orf65H3BRN8 121 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 ISLRO14498 428 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 SULT1C4O75897 302 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 CYB5AP00167 134 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 IGLV7-43P04211 117 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 CRYGDP07320 174 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 RD3LP0DJH9 198 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 PSKH1P11801 424 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 ELP2Q6IA86 826 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 TMEM144Q7Z5S9 345 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 TMED4Q7Z7H5 227 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 BOD1L2Q8IYS8 172 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 TTC9CQ8N5M4 171 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 FAM24BQ8N5W8 94 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 GATD1Q8NB37 220 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 RNF133Q8WVZ7 376 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 ARL11Q969Q4 196 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 GPX7Q96SL4 187 aaPredicted RBP1.95□□□□□ -2.1
CD44-235ENST00000532339 NMNAT3Q96T66 252 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 APOL4Q9BPW4 351 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 KRTAP4-1Q9BYQ7 146 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 WASHC3Q9Y3C0 194 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 IER3IP1Q9Y5U9 82 aa1.95□□□□□ -2.1
CD44-235ENST00000532339 A0A1B0GTI1 187 aa1.94□□□□□ -2.1
CD44-235ENST00000532339 C8orf87E5RJ46 101 aa1.94□□□□□ -2.1
CD44-235ENST00000532339 NDUFA4O00483 81 aa1.94□□□□□ -2.1
CD44-235ENST00000532339 DEGS1O15121 323 aa1.94□□□□□ -2.1
CD44-235ENST00000532339 ORC5O43913 435 aa1.94□□□□□ -2.1
CD44-235ENST00000532339 PPIBP23284 216 aaKnown RBP1.94□□□□□ -2.1
CD44-235ENST00000532339 PSMB9P28065 219 aa1.94□□□□□ -2.1
CD44-235ENST00000532339 DNAJB13P59910 316 aa1.94□□□□□ -2.1
CD44-235ENST00000532339 KRTAP19-2Q3LHN2 52 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms