RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PDE6HQ13956 83 aa10.25□□□□□ -0.77
VPS28-215ENST00000531924 Q6ZTI0 123 aa10.25□□□□□ -0.77
VPS28-215ENST00000531924 CHAC2Q8WUX2 184 aa10.25□□□□□ -0.77
VPS28-215ENST00000531924 GSN-AS1Q9NRJ2 163 aa10.25□□□□□ -0.77
VPS28-215ENST00000531924 TRGV1A0A0A0MS02 117 aa10.24□□□□□ -0.77
VPS28-215ENST00000531924 PYYP10082 97 aa10.24□□□□□ -0.77
VPS28-215ENST00000531924 TMEM78Q5T7P6 136 aa10.24□□□□□ -0.77
VPS28-215ENST00000531924 EXOC3-AS1Q8N2X6 119 aa10.24□□□□□ -0.77
VPS28-215ENST00000531924 EIF4E3Q8N5X7 224 aaKnown RBP10.24□□□□□ -0.77
VPS28-215ENST00000531924 NPCDR1Q9BY65 106 aa10.24□□□□□ -0.77
VPS28-215ENST00000531924 SLC25A31Q9H0C2 315 aa10.24□□□□□ -0.77
VPS28-215ENST00000531924 RGS13O14921 159 aa10.23□□□□□ -0.77
VPS28-215ENST00000531924 BTN1A1Q13410 526 aa10.23□□□□□ -0.77
VPS28-215ENST00000531924 ICAM4Q14773 271 aa10.23□□□□□ -0.77
VPS28-215ENST00000531924 ESRGQ1W209 222 aa10.23□□□□□ -0.77
VPS28-215ENST00000531924 FAM122CQ6P4D5 195 aa10.23□□□□□ -0.77
VPS28-215ENST00000531924 THAP6Q8TBB0 222 aa10.23□□□□□ -0.77
VPS28-215ENST00000531924 ENKURQ8TC29 256 aa10.23□□□□□ -0.77
VPS28-215ENST00000531924 AGPAT4-IT1Q9H0P7 198 aa10.23□□□□□ -0.77
VPS28-215ENST00000531924 KCNIP2Q9NS61 270 aa10.23□□□□□ -0.77
VPS28-215ENST00000531924 FUT9Q9Y231 359 aa10.23□□□□□ -0.77
VPS28-215ENST00000531924 KLLNB2CW77 178 aa10.22□□□□□ -0.77
VPS28-215ENST00000531924 NDUFB4O95168 129 aa10.22□□□□□ -0.77
VPS28-215ENST00000531924 CD300CQ08708 224 aa10.22□□□□□ -0.77
VPS28-215ENST00000531924 IL15RAQ13261 267 aa10.22□□□□□ -0.77
VPS28-215ENST00000531924 GCSAMLQ5JQS6 135 aa10.22□□□□□ -0.77
VPS28-215ENST00000531924 OR5C1Q8NGR4 320 aa10.22□□□□□ -0.77
VPS28-215ENST00000531924 ARPC5LQ9BPX5 153 aa10.22□□□□□ -0.77
VPS28-215ENST00000531924 UPK3BQ9BT76 320 aa10.22□□□□□ -0.77
VPS28-215ENST00000531924 Q9H3A6 140 aa10.22□□□□□ -0.77
VPS28-215ENST00000531924 MRPS16Q9Y3D3 137 aaKnown RBP10.22□□□□□ -0.77
VPS28-215ENST00000531924 IGKV2-40A0A087WW87 121 aaPredicted RBP10.21□□□□□ -0.77
VPS28-215ENST00000531924 A0A1W2PPQ1 181 aa10.21□□□□□ -0.77
VPS28-215ENST00000531924 E5RGE8 158 aa10.21□□□□□ -0.77
VPS28-215ENST00000531924 IGKV2D-40P01614 121 aaPredicted RBP10.21□□□□□ -0.77
VPS28-215ENST00000531924 NMBP08949 121 aa10.21□□□□□ -0.77
VPS28-215ENST00000531924 NBEAP1P0C6P0 100 aa10.21□□□□□ -0.77
VPS28-215ENST00000531924 CSN1S1P47710 185 aa10.21□□□□□ -0.77
VPS28-215ENST00000531924 NHLH2Q02577 135 aa10.21□□□□□ -0.77
VPS28-215ENST00000531924 ANXA2RQ3ZCQ2 193 aa10.21□□□□□ -0.77
VPS28-215ENST00000531924 LRRC37A5PQ49AS3 106 aa10.21□□□□□ -0.77
VPS28-215ENST00000531924 C9orf47Q6ZRZ4 202 aa10.21□□□□□ -0.77
VPS28-215ENST00000531924 MIR17HGQ75NE6 70 aa10.21□□□□□ -0.77
VPS28-215ENST00000531924 S100ZQ8WXG8 99 aa10.21□□□□□ -0.77
VPS28-215ENST00000531924 LINC00467Q9BRT7 94 aa10.21□□□□□ -0.77
VPS28-215ENST00000531924 SLC25A2Q9BXI2 301 aa10.21□□□□□ -0.77
VPS28-215ENST00000531924 OR51M1Q9H341 326 aa10.21□□□□□ -0.77
VPS28-215ENST00000531924 C17orf112F2Z3M2 114 aa10.2□□□□□ -0.78
VPS28-215ENST00000531924 ZNF324O75467 553 aaPredicted RBP10.2□□□□□ -0.78
VPS28-215ENST00000531924 CDK2AP2O75956 126 aa10.2□□□□□ -0.78
VPS28-215ENST00000531924 CRISP2P16562 243 aa10.2□□□□□ -0.78
VPS28-215ENST00000531924 ASAH1Q13510 395 aa10.2□□□□□ -0.78
VPS28-215ENST00000531924 SPATA12Q7Z6I5 190 aa10.2□□□□□ -0.78
VPS28-215ENST00000531924 C11orf72Q8NBR9 251 aa10.2□□□□□ -0.78
VPS28-215ENST00000531924 PAXXQ9BUH6 204 aa10.2□□□□□ -0.78
VPS28-215ENST00000531924 KLF12Q9Y4X4 402 aa10.2□□□□□ -0.78
VPS28-215ENST00000531924 PAX4O43316 350 aa10.19□□□□□ -0.78
VPS28-215ENST00000531924 SIX6O95475 246 aa10.19□□□□□ -0.78
VPS28-215ENST00000531924 OR10J4P0C629 311 aa10.19□□□□□ -0.78
VPS28-215ENST00000531924 ZNF138P52744 262 aa10.19□□□□□ -0.78
VPS28-215ENST00000531924 TCL1AP56279 114 aa10.19□□□□□ -0.78
VPS28-215ENST00000531924 CYCSP99999 105 aaKnown RBP10.19□□□□□ -0.78
VPS28-215ENST00000531924 FAM19A4Q96LR4 140 aa10.19□□□□□ -0.78
VPS28-215ENST00000531924 C18orf15Q96N68 181 aa10.19□□□□□ -0.78
VPS28-215ENST00000531924 VGLL1Q99990 258 aa10.19□□□□□ -0.78
VPS28-215ENST00000531924 MRPL32Q9BYC8 188 aaKnown RBP10.19□□□□□ -0.78
VPS28-215ENST00000531924 ABCA13Q86UQ4 5058 aa10.19□□□□□ -0.78
VPS28-215ENST00000531924 IGHV1OR15-1A0A075B7D0 117 aa10.18□□□□□ -0.78
VPS28-215ENST00000531924 A0A096LPF7 62 aa10.18□□□□□ -0.78
VPS28-215ENST00000531924 OR7C2O60412 319 aa10.18□□□□□ -0.78
VPS28-215ENST00000531924 SPINK4O60575 86 aa10.18□□□□□ -0.78
VPS28-215ENST00000531924 IGHV3-53P01767 116 aa10.18□□□□□ -0.78
VPS28-215ENST00000531924 BTF3P20290 206 aaKnown RBP10.18□□□□□ -0.78
VPS28-215ENST00000531924 IBA57Q5T440 356 aaKnown RBP10.18□□□□□ -0.78
VPS28-215ENST00000531924 LINC00299Q6ZSB3 139 aa10.18□□□□□ -0.78
VPS28-215ENST00000531924 MAPKAPK5-AS1Q8N8E1 139 aa10.18□□□□□ -0.78
VPS28-215ENST00000531924 VSIG2Q96IQ7 327 aa10.18□□□□□ -0.78
VPS28-215ENST00000531924 FAM167A-AS1Q96KT0 104 aa10.18□□□□□ -0.78
VPS28-215ENST00000531924 KRTAP1-5Q9BYS1 174 aa10.18□□□□□ -0.78
VPS28-215ENST00000531924 NMES1Q9C002 83 aa10.18□□□□□ -0.78
VPS28-215ENST00000531924 ZNF492Q9P255 531 aa10.18□□□□□ -0.78
VPS28-215ENST00000531924 ICOSQ9Y6W8 199 aa10.18□□□□□ -0.78
VPS28-215ENST00000531924 MUC4Q99102 2169 aa10.17□□□□□ -0.78
VPS28-215ENST00000531924 RANP62826 216 aaKnown RBP10.17□□□□□ -0.78
VPS28-215ENST00000531924 ZNF415Q09FC8 603 aa10.17□□□□□ -0.78
VPS28-215ENST00000531924 SLAQ13239 276 aa10.17□□□□□ -0.78
VPS28-215ENST00000531924 ZFAND2AQ8N6M9 145 aa10.17□□□□□ -0.78
VPS28-215ENST00000531924 ST6GAL2Q96JF0 529 aa10.17□□□□□ -0.78
VPS28-215ENST00000531924 WDR61Q9GZS3 305 aaKnown RBP10.17□□□□□ -0.78
VPS28-215ENST00000531924 MRPL16Q9NX20 251 aaKnown RBP10.17□□□□□ -0.78
VPS28-215ENST00000531924 OR5AC2Q9NZP5 309 aa10.17□□□□□ -0.78
VPS28-215ENST00000531924 SIVA1O15304 175 aa10.16□□□□□ -0.78
VPS28-215ENST00000531924 PRAF2O60831 178 aa10.16□□□□□ -0.78
VPS28-215ENST00000531924 Q8TAT8 98 aa10.16□□□□□ -0.78
VPS28-215ENST00000531924 SCGB1C1Q8TD33 95 aa10.16□□□□□ -0.78
VPS28-215ENST00000531924 FXYD5Q96DB9 178 aa10.16□□□□□ -0.78
VPS28-215ENST00000531924 PRO0255Q9UI72 69 aa10.16□□□□□ -0.78
VPS28-215ENST00000531924 TP53TG3Q9ULZ0 132 aa10.16□□□□□ -0.78
VPS28-215ENST00000531924 TRBV7-9A0A0J9YWB2 115 aa10.15□□□□□ -0.78
VPS28-215ENST00000531924 EREGO14944 169 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms