RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 EDN2P20800 178 aa15.98■□□□□ 0.15
VPS28-212ENST00000530836 PAFAH1B2P68402 229 aa15.98■□□□□ 0.15
VPS28-212ENST00000530836 OR5I1Q13606 314 aa15.98■□□□□ 0.15
VPS28-212ENST00000530836 PRR31Q5SQ13 230 aa15.98■□□□□ 0.15
VPS28-212ENST00000530836 IGKV2-40A0A087WW87 121 aaPredicted RBP15.97■□□□□ 0.15
VPS28-212ENST00000530836 OVOL1O14753 267 aa15.97■□□□□ 0.15
VPS28-212ENST00000530836 IGKV2D-40P01614 121 aaPredicted RBP15.97■□□□□ 0.15
VPS28-212ENST00000530836 IBA57Q5T440 356 aaKnown RBP15.97■□□□□ 0.15
VPS28-212ENST00000530836 KCNIP4Q6PIL6 250 aa15.97■□□□□ 0.15
VPS28-212ENST00000530836 NHLRC2Q8NBF2 726 aa15.97■□□□□ 0.15
VPS28-212ENST00000530836 DCANP1Q8TF63 244 aa15.97■□□□□ 0.15
VPS28-212ENST00000530836 MS4A6AQ9H2W1 248 aa15.97■□□□□ 0.15
VPS28-212ENST00000530836 COX8CQ7Z4L0 72 aa15.97■□□□□ 0.15
VPS28-212ENST00000530836 NDFIP1Q9BT67 221 aa15.97■□□□□ 0.15
VPS28-212ENST00000530836 SIGLEC8Q9NYZ4 499 aa15.97■□□□□ 0.15
VPS28-212ENST00000530836 ZNF492Q9P255 531 aa15.97■□□□□ 0.15
VPS28-212ENST00000530836 COLCA2A8K830 154 aa15.96■□□□□ 0.15
VPS28-212ENST00000530836 CSN3P07498 182 aa15.96■□□□□ 0.15
VPS28-212ENST00000530836 ZNF738Q8NE65 137 aa15.96■□□□□ 0.15
VPS28-212ENST00000530836 BTF3L4Q96K17 158 aa15.96■□□□□ 0.15
VPS28-212ENST00000530836 YPEL4Q96NS1 127 aa15.96■□□□□ 0.15
VPS28-212ENST00000530836 PPP1R14DQ9NXH3 145 aa15.96■□□□□ 0.15
VPS28-212ENST00000530836 TRAV2A0A0B4J234 112 aa15.95■□□□□ 0.14
VPS28-212ENST00000530836 SNRPD3P62318 126 aaKnown RBP15.95■□□□□ 0.14
VPS28-212ENST00000530836 ELOBQ15370 118 aa15.95■□□□□ 0.14
VPS28-212ENST00000530836 ADAMTSL5Q6ZMM2 481 aa15.95■□□□□ 0.14
VPS28-212ENST00000530836 C9orf47Q6ZRZ4 202 aa15.95■□□□□ 0.14
VPS28-212ENST00000530836 FAM24BQ8N5W8 94 aa15.95■□□□□ 0.14
VPS28-212ENST00000530836 IGKV3-7A0A075B6H7 116 aa15.94■□□□□ 0.14
VPS28-212ENST00000530836 CT45A10P0DMU9 189 aa15.94■□□□□ 0.14
VPS28-212ENST00000530836 TMEM78Q5T7P6 136 aa15.94■□□□□ 0.14
VPS28-212ENST00000530836 DYNLRB2Q8TF09 96 aa15.94■□□□□ 0.14
VPS28-212ENST00000530836 DAZAP1Q96EP5 407 aaKnown RBP15.94■□□□□ 0.14
VPS28-212ENST00000530836 PRR25Q96S07 402 aa15.94■□□□□ 0.14
VPS28-212ENST00000530836 VGLL1Q99990 258 aa15.94■□□□□ 0.14
VPS28-212ENST00000530836 RNASE7Q9H1E1 156 aaKnown RBP15.94■□□□□ 0.14
VPS28-212ENST00000530836 V9GYV3 84 aa15.94■□□□□ 0.14
VPS28-212ENST00000530836 PKD1L1Q8TDX9 2849 aa15.94■□□□□ 0.14
VPS28-212ENST00000530836 PRAC2D3DTV9 90 aa15.94■□□□□ 0.14
VPS28-212ENST00000530836 PFN1P07737 140 aaKnown RBP15.94■□□□□ 0.14
VPS28-212ENST00000530836 GBGT1Q8N5D6 347 aa15.94■□□□□ 0.14
VPS28-212ENST00000530836 OR10J6PQ8NGY7 276 aa15.94■□□□□ 0.14
VPS28-212ENST00000530836 LENEPQ9Y5L5 61 aa15.94■□□□□ 0.14
VPS28-212ENST00000530836 URGCP-MRPS24S4R325 110 aa15.94■□□□□ 0.14
VPS28-212ENST00000530836 WNK1Q9H4A3 2382 aa15.93■□□□□ 0.14
VPS28-212ENST00000530836 K7EQG2 157 aa15.93■□□□□ 0.14
VPS28-212ENST00000530836 PRR27Q6MZM9 219 aa15.93■□□□□ 0.14
VPS28-212ENST00000530836 RBPMS2Q6ZRY4 209 aaKnown RBP15.93■□□□□ 0.14
VPS28-212ENST00000530836 C20orf173Q96LM9 149 aa15.93■□□□□ 0.14
VPS28-212ENST00000530836 LINC00477Q96M19 166 aa15.93■□□□□ 0.14
VPS28-212ENST00000530836 IL36BQ9NZH7 164 aa15.93■□□□□ 0.14
VPS28-212ENST00000530836 TRBV24-1A0A075B6N3 115 aa15.92■□□□□ 0.14
VPS28-212ENST00000530836 ZNF705GA8MUZ8 300 aaPredicted RBP15.92■□□□□ 0.14
VPS28-212ENST00000530836 GATCO43716 136 aaKnown RBP15.92■□□□□ 0.14
VPS28-212ENST00000530836 NUDT10Q8NFP7 164 aa15.92■□□□□ 0.14
VPS28-212ENST00000530836 NUDT11Q96G61 164 aa15.92■□□□□ 0.14
VPS28-212ENST00000530836 TRAV9-1A0A075B6T8 112 aa15.91■□□□□ 0.14
VPS28-212ENST00000530836 TRAV25A0A0B4J276 109 aa15.91■□□□□ 0.14
VPS28-212ENST00000530836 C19orf71A6NCJ1 209 aa15.91■□□□□ 0.14
VPS28-212ENST00000530836 ZNF138P52744 262 aa15.91■□□□□ 0.14
VPS28-212ENST00000530836 CT83Q5H943 113 aa15.91■□□□□ 0.14
VPS28-212ENST00000530836 P01737 135 aa15.9■□□□□ 0.14
VPS28-212ENST00000530836 PF4P02776 101 aa15.9■□□□□ 0.14
VPS28-212ENST00000530836 DEFB114Q30KQ6 69 aa15.9■□□□□ 0.14
VPS28-212ENST00000530836 WFDC3Q8IUB2 231 aa15.9■□□□□ 0.14
VPS28-212ENST00000530836 OR4B1Q8NGF8 309 aa15.9■□□□□ 0.14
VPS28-212ENST00000530836 ZC2HC1AQ96GY0 325 aa15.9■□□□□ 0.14
VPS28-212ENST00000530836 AGPAT4-IT1Q9H0P7 198 aa15.9■□□□□ 0.14
VPS28-212ENST00000530836 NPIPB6E9PJ23 425 aa15.9■□□□□ 0.14
VPS28-212ENST00000530836 PYGO2Q9BRQ0 406 aa15.9■□□□□ 0.14
VPS28-212ENST00000530836 TRBV7-9A0A0J9YWB2 115 aa15.89■□□□□ 0.13
VPS28-212ENST00000530836 RAB5AP20339 215 aa15.89■□□□□ 0.13
VPS28-212ENST00000530836 ERCC8Q13216 396 aa15.89■□□□□ 0.13
VPS28-212ENST00000530836 SMUG1Q53HV7 270 aa15.89■□□□□ 0.13
VPS28-212ENST00000530836 OR8A1Q8NGG7 326 aa15.89■□□□□ 0.13
VPS28-212ENST00000530836 RPL19P84098 196 aaKnown RBP15.88■□□□□ 0.13
VPS28-212ENST00000530836 FAM210BQ96KR6 192 aa15.88■□□□□ 0.13
VPS28-212ENST00000530836 RPP21Q9H633 154 aaKnown RBP15.88■□□□□ 0.13
VPS28-212ENST00000530836 TFPI2P48307 235 aa15.87■□□□□ 0.13
VPS28-212ENST00000530836 FAM162BQ5T6X4 162 aa15.87■□□□□ 0.13
VPS28-212ENST00000530836 WFDC9Q8NEX5 89 aa15.87■□□□□ 0.13
VPS28-212ENST00000530836 Q8TAT8 98 aa15.87■□□□□ 0.13
VPS28-212ENST00000530836 SPAG8Q99932 426 aaPredicted RBP15.87■□□□□ 0.13
VPS28-212ENST00000530836 SELENOKQ9Y6D0 94 aa15.87■□□□□ 0.13
VPS28-212ENST00000530836 TGIF2-C20orf24A0A0A6YYL0 155 aa15.86■□□□□ 0.13
VPS28-212ENST00000530836 SMIM27A0A1W2PRY6 76 aa15.86■□□□□ 0.13
VPS28-212ENST00000530836 PRB4P10163 310 aaPredicted RBP15.86■□□□□ 0.13
VPS28-212ENST00000530836 LINC00322Q6ZN03 302 aaPredicted RBP15.86■□□□□ 0.13
VPS28-212ENST00000530836 TMEM61Q8N0U2 210 aa15.86■□□□□ 0.13
VPS28-212ENST00000530836 LINC00482Q8N8I6 264 aa15.86■□□□□ 0.13
VPS28-212ENST00000530836 C8orf49Q96NF6 230 aa15.86■□□□□ 0.13
VPS28-212ENST00000530836 MGAM2Q2M2H8 2515 aa15.86■□□□□ 0.13
VPS28-212ENST00000530836 A0A1W2PPQ1 181 aa15.86■□□□□ 0.13
VPS28-212ENST00000530836 A8MWL6 223 aa15.86■□□□□ 0.13
VPS28-212ENST00000530836 CXCL1P09341 107 aa15.86■□□□□ 0.13
VPS28-212ENST00000530836 ZNF688P0C7X2 276 aa15.86■□□□□ 0.13
VPS28-212ENST00000530836 PSMG4Q5JS54 123 aa15.86■□□□□ 0.13
VPS28-212ENST00000530836 TSKUQ8WUA8 353 aa15.86■□□□□ 0.13
VPS28-212ENST00000530836 ASCL2Q99929 193 aa15.86■□□□□ 0.13
VPS28-212ENST00000530836 FAM231BA6NCW3 169 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms