RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 SCRT1Q9BWW7 348 aa2.15□□□□□ -2.07
CD44-229ENST00000528672 ZNF286AQ9HBT8 521 aa2.15□□□□□ -2.07
CD44-229ENST00000528672 TMEM14AQ9Y6G1 99 aa2.15□□□□□ -2.07
CD44-229ENST00000528672 IQGAP3Q86VI3 1631 aa2.15□□□□□ -2.07
CD44-229ENST00000528672 RNF17Q9BXT8 1623 aaKnown RBP2.15□□□□□ -2.07
CD44-229ENST00000528672 ALKQ9UM73 1620 aa2.15□□□□□ -2.07
CD44-229ENST00000528672 DOCK5Q9H7D0 1870 aa2.15□□□□□ -2.07
CD44-229ENST00000528672 EFCAB5A4FU69 1503 aa2.15□□□□□ -2.07
CD44-229ENST00000528672 ABCC6O95255 1503 aa2.15□□□□□ -2.07
CD44-229ENST00000528672 ITSN2Q9NZM3 1697 aa2.15□□□□□ -2.07
CD44-229ENST00000528672 GLI2P10070 1586 aa2.15□□□□□ -2.07
CD44-229ENST00000528672 SPHKAPQ2M3C7 1700 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 C2orf16Q68DN1 1984 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 KANTRA0A1W2PQU2 76 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 TMEM223A0PJW6 202 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 UMAD1C9J7I0 102 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 SDCBPO00560 298 aaPredicted RBP2.14□□□□□ -2.07
CD44-229ENST00000528672 IGLV2-8P01709 118 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 HLA-DQA1P01909 254 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 HBDP02042 147 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 C1QAP02745 245 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 CD7P09564 240 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 KRTAP1-4P0C5Y4 121 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 FAUP35544 74 aaKnown RBP2.14□□□□□ -2.07
CD44-229ENST00000528672 SSR2P43308 183 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 CSN1S1P47710 185 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 NPC2P61916 151 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 SYCNQ0VAF6 134 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 TMEM155Q4W5P6 130 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 C2orf83Q53S99 150 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 PYDC2Q56P42 97 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 Q6ZQT7 251 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 ZNF101Q8IZC7 436 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 OR10G2Q8NGC3 310 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 FAM213BQ8TBF2 198 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 FAM57AQ8TBR7 257 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 MYOZ3Q8TDC0 251 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 FGF13Q92913 245 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 UPK3BQ9BT76 320 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 C8orf17Q9NRJ1 99 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 ZNF355PQ9NSJ1 428 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 ZNF706Q9Y5V0 76 aaPredicted RBP2.14□□□□□ -2.07
CD44-229ENST00000528672 ADGBQ8N7X0 1667 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 LAMC3Q9Y6N6 1575 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 MARF1Q9Y4F3 1742 aaKnown RBP2.14□□□□□ -2.07
CD44-229ENST00000528672 FER1L6Q2WGJ9 1857 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 C1orf167Q5SNV9 1468 aa2.14□□□□□ -2.07
CD44-229ENST00000528672 LOXHD1Q8IVV2 1947 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 PCNTO95613 3336 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 IGLV4-69A0A075B6H9 119 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 IGHV3-72A0A0B4J1Y9 119 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 IGKV1-9A0A0C4DH69 117 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 A0A0G2JND7 137 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 IGHV7-4-1A0A0J9YVY3 117 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 hADV29S1A0JD25 119 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 NAP1L6A6NFF2 107 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 SNRPGP15A8MWD9 76 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 C17orf112F2Z3M2 114 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 K7ERJ3 54 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 LTAP01374 205 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 IGKCP01834 107 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 SRP19P09132 144 aaKnown RBP2.13□□□□□ -2.07
CD44-229ENST00000528672 RNASE13Q5GAN3 156 aaKnown RBP2.13□□□□□ -2.07
CD44-229ENST00000528672 MIC13Q5XKP0 118 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 LAIR2Q6ISS4 152 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 AMN1Q8IY45 258 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 DEFB107AQ8IZN7 70 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 CYB561D1Q8N8Q1 229 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 CMTM2Q8TAZ6 248 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 WFDC5Q8TCV5 224 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 ZNF492Q9P255 531 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 ZNF835Q9Y2P0 537 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 SHANK3Q9BYB0 1731 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 CDC42BPBQ9Y5S2 1711 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 RALGAPBQ86X10 1494 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 PIK3C2BO00750 1634 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 MYO18AQ92614 2054 aaKnown RBP2.13□□□□□ -2.07
CD44-229ENST00000528672 MYO10Q9HD67 2058 aa2.13□□□□□ -2.07
CD44-229ENST00000528672 SBF2Q86WG5 1849 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 TET3O43151 1660 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 CFAP43Q8NDM7 1665 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 THSD7AQ9UPZ6 1657 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 NOTCH2Q04721 2471 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 NUP205Q92621 2012 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 CCDC88CQ9P219 2028 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 NLRC5Q86WI3 1866 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 ADGRB1O14514 1584 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 IQGAP2Q13576 1575 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 FXYD6-FXYD2A0A087WZ82 144 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 IGKV6D-41A0A0C4DH26 115 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 NUPR1O60356 82 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 COX7A2P2O60397 106 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 IGHV3-7P01780 117 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 MDKP21741 143 aaPredicted RBP2.12□□□□□ -2.07
CD44-229ENST00000528672 RNASE4P34096 147 aaKnown RBP2.12□□□□□ -2.07
CD44-229ENST00000528672 DYNLT3P51808 116 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 UBE2BP63146 152 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 CCL20P78556 96 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 FUT5Q11128 374 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 SS18Q15532 418 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms