RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 HLA-DMBP28068 263 aa14.38□□□□□ -0.11
VPS28-207ENST00000526977 OR10D4PQ8NGN7 298 aa14.38□□□□□ -0.11
VPS28-207ENST00000526977 HIST1H2BLQ99880 126 aa14.38□□□□□ -0.11
VPS28-207ENST00000526977 SERTM2A0A1B0GWG4 89 aa14.37□□□□□ -0.11
VPS28-207ENST00000526977 SNURFLB1AK76 121 aa14.37□□□□□ -0.11
VPS28-207ENST00000526977 FABP4P15090 132 aa14.37□□□□□ -0.11
VPS28-207ENST00000526977 MRPL54Q6P161 138 aaKnown RBP14.37□□□□□ -0.11
VPS28-207ENST00000526977 UNQ9165/PRO28630Q6UXU0 137 aa14.37□□□□□ -0.11
VPS28-207ENST00000526977 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.37□□□□□ -0.11
VPS28-207ENST00000526977 KLHL30-AS1Q8NEE0 82 aa14.37□□□□□ -0.11
VPS28-207ENST00000526977 ZC2HC1AQ96GY0 325 aa14.37□□□□□ -0.11
VPS28-207ENST00000526977 NEU1Q99519 415 aa14.37□□□□□ -0.11
VPS28-207ENST00000526977 NAT8BQ9UHF3 227 aa14.37□□□□□ -0.11
VPS28-207ENST00000526977 IGHV4OR15-8A0A075B7B6 117 aa14.37□□□□□ -0.11
VPS28-207ENST00000526977 A0A087WW49 117 aa14.37□□□□□ -0.11
VPS28-207ENST00000526977 TMEM136Q6ZRR5 245 aa14.37□□□□□ -0.11
VPS28-207ENST00000526977 C2CD3Q4AC94 2353 aa14.37□□□□□ -0.11
VPS28-207ENST00000526977 ZNF705FA8MVS1 300 aaPredicted RBP14.36□□□□□ -0.11
VPS28-207ENST00000526977 NPIPB6E9PJ23 425 aa14.36□□□□□ -0.11
VPS28-207ENST00000526977 K7EMT4 169 aa14.36□□□□□ -0.11
VPS28-207ENST00000526977 CHEK1O14757 476 aa14.36□□□□□ -0.11
VPS28-207ENST00000526977 COX19Q49B96 90 aa14.36□□□□□ -0.11
VPS28-207ENST00000526977 CT83Q5H943 113 aa14.36□□□□□ -0.11
VPS28-207ENST00000526977 PYY3Q5JQD4 70 aa14.36□□□□□ -0.11
VPS28-207ENST00000526977 LCN12Q6JVE5 192 aa14.36□□□□□ -0.11
VPS28-207ENST00000526977 WDR73Q6P4I2 378 aa14.36□□□□□ -0.11
VPS28-207ENST00000526977 C18orf65Q6ZTR6 163 aa14.36□□□□□ -0.11
VPS28-207ENST00000526977 C11orf44Q8N8P7 122 aa14.36□□□□□ -0.11
VPS28-207ENST00000526977 CITED2Q99967 270 aaPredicted RBP14.36□□□□□ -0.11
VPS28-207ENST00000526977 IGKV2-40A0A087WW87 121 aaPredicted RBP14.36□□□□□ -0.11
VPS28-207ENST00000526977 HIGD1CA8MV81 97 aa14.36□□□□□ -0.11
VPS28-207ENST00000526977 A8MWL6 223 aa14.36□□□□□ -0.11
VPS28-207ENST00000526977 LINC01619G3V211 115 aa14.36□□□□□ -0.11
VPS28-207ENST00000526977 IGKV2D-40P01614 121 aaPredicted RBP14.36□□□□□ -0.11
VPS28-207ENST00000526977 GBGT1Q8N5D6 347 aa14.36□□□□□ -0.11
VPS28-207ENST00000526977 OR11H1Q8NG94 326 aa14.36□□□□□ -0.11
VPS28-207ENST00000526977 DPF1Q92782 380 aa14.36□□□□□ -0.11
VPS28-207ENST00000526977 CRIP1P50238 77 aa14.35□□□□□ -0.11
VPS28-207ENST00000526977 C16orf54Q6UWD8 224 aa14.35□□□□□ -0.11
VPS28-207ENST00000526977 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.35□□□□□ -0.11
VPS28-207ENST00000526977 OR1N2Q8NGR9 330 aa14.35□□□□□ -0.11
VPS28-207ENST00000526977 NIT2Q9NQR4 276 aa14.35□□□□□ -0.11
VPS28-207ENST00000526977 DAZ1Q9NQZ3 744 aaKnown RBP14.35□□□□□ -0.11
VPS28-207ENST00000526977 UFC1Q9Y3C8 167 aa14.35□□□□□ -0.11
VPS28-207ENST00000526977 LGALS9O00182 355 aa14.34□□□□□ -0.11
VPS28-207ENST00000526977 AMBPP02760 352 aa14.34□□□□□ -0.11
VPS28-207ENST00000526977 HOXD3P31249 432 aaPredicted RBP14.34□□□□□ -0.11
VPS28-207ENST00000526977 TCF24Q7RTU0 167 aa14.34□□□□□ -0.11
VPS28-207ENST00000526977 GTSF1Q8WW33 167 aa14.34□□□□□ -0.11
VPS28-207ENST00000526977 MT-ND6P03923 174 aa14.34□□□□□ -0.11
VPS28-207ENST00000526977 REC114Q7Z4M0 266 aa14.34□□□□□ -0.11
VPS28-207ENST00000526977 C8orf49Q96NF6 230 aa14.34□□□□□ -0.11
VPS28-207ENST00000526977 VGLL1Q99990 258 aa14.34□□□□□ -0.11
VPS28-207ENST00000526977 A0A1W2PS18 150 aa14.33□□□□□ -0.12
VPS28-207ENST00000526977 RAB4BP61018 213 aa14.33□□□□□ -0.12
VPS28-207ENST00000526977 KLF5Q13887 457 aaPredicted RBP14.33□□□□□ -0.12
VPS28-207ENST00000526977 DEFB136Q30KP8 78 aa14.33□□□□□ -0.12
VPS28-207ENST00000526977 OR4B1Q8NGF8 309 aa14.33□□□□□ -0.12
VPS28-207ENST00000526977 GLMPQ8WWB7 406 aa14.33□□□□□ -0.12
VPS28-207ENST00000526977 PACRGQ96M98 296 aaPredicted RBP14.33□□□□□ -0.12
VPS28-207ENST00000526977 TEP1Q99973 2627 aaKnown RBP14.33□□□□□ -0.12
VPS28-207ENST00000526977 SETD2Q9BYW2 2564 aaPredicted RBP14.33□□□□□ -0.12
VPS28-207ENST00000526977 RASL11AQ6T310 242 aa14.32□□□□□ -0.12
VPS28-207ENST00000526977 C8orf86Q6ZUL3 223 aa14.32□□□□□ -0.12
VPS28-207ENST00000526977 RNF182Q8N6D2 247 aa14.32□□□□□ -0.12
VPS28-207ENST00000526977 SLC50A1Q9BRV3 221 aa14.32□□□□□ -0.12
VPS28-207ENST00000526977 GFRA4Q9GZZ7 299 aa14.32□□□□□ -0.12
VPS28-207ENST00000526977 JMJD1CQ15652 2540 aa14.32□□□□□ -0.12
VPS28-207ENST00000526977 TRAV8-2A0A0B4J237 113 aa14.32□□□□□ -0.12
VPS28-207ENST00000526977 FBLL1A6NHQ2 334 aaKnown RBP14.32□□□□□ -0.12
VPS28-207ENST00000526977 PRAC2D3DTV9 90 aa14.32□□□□□ -0.12
VPS28-207ENST00000526977 GDF5OSQ5U4N7 250 aa14.32□□□□□ -0.12
VPS28-207ENST00000526977 OR2D3Q8NGH3 330 aa14.32□□□□□ -0.12
VPS28-207ENST00000526977 FAM231BA6NCW3 169 aa14.31□□□□□ -0.12
VPS28-207ENST00000526977 A8MWP6 167 aa14.31□□□□□ -0.12
VPS28-207ENST00000526977 SYNJ2BPP57105 145 aa14.31□□□□□ -0.12
VPS28-207ENST00000526977 TM4SF20Q53R12 229 aa14.31□□□□□ -0.12
VPS28-207ENST00000526977 SAPCD1Q5SSQ6 148 aa14.31□□□□□ -0.12
VPS28-207ENST00000526977 COX8CQ7Z4L0 72 aa14.31□□□□□ -0.12
VPS28-207ENST00000526977 TMEM256Q8N2U0 113 aa14.31□□□□□ -0.12
VPS28-207ENST00000526977 PRR25Q96S07 402 aa14.31□□□□□ -0.12
VPS28-207ENST00000526977 IGHV7-4-1A0A0J9YVY3 117 aa14.31□□□□□ -0.12
VPS28-207ENST00000526977 A0A1W2PRX2 142 aa14.31□□□□□ -0.12
VPS28-207ENST00000526977 GRIFINA4D1Z8 144 aa14.31□□□□□ -0.12
VPS28-207ENST00000526977 HLA-DQA1P01909 254 aa14.31□□□□□ -0.12
VPS28-207ENST00000526977 GZMBP10144 247 aa14.31□□□□□ -0.12
VPS28-207ENST00000526977 CRISP2P16562 243 aa14.3□□□□□ -0.12
VPS28-207ENST00000526977 BMI1P35226 326 aa14.3□□□□□ -0.12
VPS28-207ENST00000526977 KIAA1644Q3SXP7 199 aa14.3□□□□□ -0.12
VPS28-207ENST00000526977 PGLYRP4Q96LB8 373 aa14.3□□□□□ -0.12
VPS28-207ENST00000526977 A0A1B0GXF2 115 aa14.29□□□□□ -0.12
VPS28-207ENST00000526977 CCL24O00175 119 aa14.29□□□□□ -0.12
VPS28-207ENST00000526977 NUPR1O60356 82 aa14.29□□□□□ -0.12
VPS28-207ENST00000526977 FHL3Q13643 280 aa14.29□□□□□ -0.12
VPS28-207ENST00000526977 HIST2H2BDQ6DRA6 164 aa14.29□□□□□ -0.12
VPS28-207ENST00000526977 RBPMS2Q6ZRY4 209 aaKnown RBP14.29□□□□□ -0.12
VPS28-207ENST00000526977 ATP5L2Q7Z4Y8 100 aa14.29□□□□□ -0.12
VPS28-207ENST00000526977 NDUFA11Q86Y39 141 aa14.29□□□□□ -0.12
VPS28-207ENST00000526977 RAX2Q96IS3 184 aa14.29□□□□□ -0.12
VPS28-207ENST00000526977 SMPXQ9UHP9 88 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms