RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 FAM19A4Q96LR4 140 aa15.11■□□□□ 0.01
CD44-222ENST00000526025 AGPAT4-IT1Q9H0P7 198 aa15.11■□□□□ 0.01
CD44-222ENST00000526025 YTHDF2Q9Y5A9 579 aaKnown RBP15.11■□□□□ 0.01
CD44-222ENST00000526025 NMBP08949 121 aa15.1■□□□□ 0.01
CD44-222ENST00000526025 CT45A10P0DMU9 189 aa15.1■□□□□ 0.01
CD44-222ENST00000526025 LEPP41159 167 aa15.1■□□□□ 0.01
CD44-222ENST00000526025 SUMO1P63165 101 aaKnown RBP15.1■□□□□ 0.01
CD44-222ENST00000526025 SPINK13Q1W4C9 94 aa15.1■□□□□ 0.01
CD44-222ENST00000526025 ALKAL2Q6UX46 152 aa15.1■□□□□ 0.01
CD44-222ENST00000526025 LENEPQ9Y5L5 61 aa15.1■□□□□ 0.01
CD44-222ENST00000526025 CRXO43186 299 aaPredicted RBP15.09■□□□□ 0.01
CD44-222ENST00000526025 INSP01308 110 aa15.09■□□□□ 0.01
CD44-222ENST00000526025 TCRAP04437 139 aa15.09■□□□□ 0.01
CD44-222ENST00000526025 CRISP2P16562 243 aa15.09■□□□□ 0.01
CD44-222ENST00000526025 PMS2P11Q13670 270 aa15.09■□□□□ 0.01
CD44-222ENST00000526025 ZNF705AQ6ZN79 300 aaPredicted RBP15.09■□□□□ 0.01
CD44-222ENST00000526025 VGLL1Q99990 258 aa15.09■□□□□ 0.01
CD44-222ENST00000526025 C20orf144Q9BQM9 153 aa15.09■□□□□ 0.01
CD44-222ENST00000526025 ZNF492Q9P255 531 aa15.09■□□□□ 0.01
CD44-222ENST00000526025 EPDR1Q9UM22 224 aa15.09■□□□□ 0.01
CD44-222ENST00000526025 FBLL1A6NHQ2 334 aaKnown RBP15.08■□□□□ 0
CD44-222ENST00000526025 K7EQM0 130 aa15.08■□□□□ 0
CD44-222ENST00000526025 M0R2Z0 102 aa15.08■□□□□ 0
CD44-222ENST00000526025 PRB4P10163 310 aaPredicted RBP15.08■□□□□ 0
CD44-222ENST00000526025 ZNF138P52744 262 aa15.08■□□□□ 0
CD44-222ENST00000526025 FXYD7P58549 80 aa15.08■□□□□ 0
CD44-222ENST00000526025 UBE2G2P60604 165 aa15.08■□□□□ 0
CD44-222ENST00000526025 ERCC8Q13216 396 aa15.08■□□□□ 0
CD44-222ENST00000526025 CCDC28AQ8IWP9 274 aa15.08■□□□□ 0
CD44-222ENST00000526025 OR11H2Q8NH07 326 aa15.08■□□□□ 0
CD44-222ENST00000526025 NEU1Q99519 415 aa15.08■□□□□ 0
CD44-222ENST00000526025 RARRES2Q99969 163 aa15.08■□□□□ 0
CD44-222ENST00000526025 ATG101Q9BSB4 218 aa15.08■□□□□ 0
CD44-222ENST00000526025 GOLT1BQ9Y3E0 138 aa15.08■□□□□ 0
CD44-222ENST00000526025 BLOC1S1P78537 153 aa15.07■□□□□ 0
CD44-222ENST00000526025 GOLT1AQ6ZVE7 132 aa15.07■□□□□ 0
CD44-222ENST00000526025 HIST1H2BAQ96A08 127 aa15.07■□□□□ 0
CD44-222ENST00000526025 MANBALQ9NQG1 85 aa15.07■□□□□ 0
CD44-222ENST00000526025 KLLNB2CW77 178 aa15.06■□□□□ 0
CD44-222ENST00000526025 GNG5P63218 68 aa15.06■□□□□ 0
CD44-222ENST00000526025 TMEM256Q8N2U0 113 aa15.06■□□□□ 0
CD44-222ENST00000526025 CYB561D1Q8N8Q1 229 aa15.06■□□□□ 0
CD44-222ENST00000526025 SMIM9A6NGZ8 99 aa15.05■□□□□ -0
CD44-222ENST00000526025 PAGE4O60829 102 aa15.05■□□□□ -0
CD44-222ENST00000526025 MIFP14174 115 aa15.05■□□□□ -0
CD44-222ENST00000526025 C1orf158Q8N1D5 194 aa15.05■□□□□ -0
CD44-222ENST00000526025 TMEM75Q8N9X5 138 aa15.05■□□□□ -0
CD44-222ENST00000526025 TXNDC17Q9BRA2 123 aa15.05■□□□□ -0
CD44-222ENST00000526025 RPH3ALQ9UNE2 315 aa15.05■□□□□ -0
CD44-222ENST00000526025 X6R8D5 127 aa15.05■□□□□ -0
CD44-222ENST00000526025 A0A1B0GV50 99 aa15.04■□□□□ -0
CD44-222ENST00000526025 IFNA7P01567 189 aa15.04■□□□□ -0
CD44-222ENST00000526025 CST9LP1Q5W188 147 aa15.04■□□□□ -0
CD44-222ENST00000526025 TEX261Q6UWH6 196 aa15.04■□□□□ -0
CD44-222ENST00000526025 LYPD6BQ8NI32 183 aa15.04■□□□□ -0
CD44-222ENST00000526025 C11orf68Q9H3H3 251 aaKnown RBP15.04■□□□□ -0
CD44-222ENST00000526025 EDA2RQ9HAV5 297 aa15.04■□□□□ -0
CD44-222ENST00000526025 TRAV12-2A0A075B6T6 113 aa15.03■□□□□ -0
CD44-222ENST00000526025 F6UZH7 168 aa15.03■□□□□ -0
CD44-222ENST00000526025 PEX7O00628 323 aa15.03■□□□□ -0
CD44-222ENST00000526025 TAGLN2P37802 199 aaKnown RBP15.03■□□□□ -0
CD44-222ENST00000526025 CCL20P78556 96 aa15.03■□□□□ -0
CD44-222ENST00000526025 GFI1BQ5VTD9 330 aa15.03■□□□□ -0
CD44-222ENST00000526025 ZFAND2AQ8N6M9 145 aa15.03■□□□□ -0
CD44-222ENST00000526025 IFNA1P01562 189 aa15.02■□□□□ -0
CD44-222ENST00000526025 Q8NAQ8 132 aa15.02■□□□□ -0
CD44-222ENST00000526025 Q8TAT8 98 aa15.02■□□□□ -0
CD44-222ENST00000526025 GNG13Q9P2W3 67 aa15.02■□□□□ -0
CD44-222ENST00000526025 C7orf71A4D174 169 aa15.01□□□□□ -0.01
CD44-222ENST00000526025 ATP5G3P48201 142 aa15.01□□□□□ -0.01
CD44-222ENST00000526025 TMEM208Q9BTX3 173 aa15.01□□□□□ -0.01
CD44-222ENST00000526025 H7BYZ3 331 aa15□□□□□ -0.01
CD44-222ENST00000526025 IGLV2-11P01706 119 aa15□□□□□ -0.01
CD44-222ENST00000526025 GPX1P07203 203 aa15□□□□□ -0.01
CD44-222ENST00000526025 RBMY1A1P0DJD3 496 aaKnown RBP15□□□□□ -0.01
CD44-222ENST00000526025 RBMY1CP0DJD4 496 aa15□□□□□ -0.01
CD44-222ENST00000526025 RBMY1FQ15415 496 aaKnown RBP15□□□□□ -0.01
CD44-222ENST00000526025 ZNF680Q8NEM1 530 aa15□□□□□ -0.01
CD44-222ENST00000526025 NDFIP1Q9BT67 221 aa15□□□□□ -0.01
CD44-222ENST00000526025 KLF12Q9Y4X4 402 aa15□□□□□ -0.01
CD44-222ENST00000526025 TRAV8-1A0A0A6YYK1 113 aa14.99□□□□□ -0.01
CD44-222ENST00000526025 TRBV6-1A0A0K0K1D8 114 aa14.99□□□□□ -0.01
CD44-222ENST00000526025 C11orf94C9JXX5 98 aa14.99□□□□□ -0.01
CD44-222ENST00000526025 TAS2R60P59551 318 aa14.99□□□□□ -0.01
CD44-222ENST00000526025 FLI1Q01543 452 aaPredicted RBP14.99□□□□□ -0.01
CD44-222ENST00000526025 KIR3DS1Q14943 382 aa14.99□□□□□ -0.01
CD44-222ENST00000526025 WWC2-AS2Q96NR7 200 aa14.99□□□□□ -0.01
CD44-222ENST00000526025 NIPSNAP3BQ9BS92 247 aa14.99□□□□□ -0.01
CD44-222ENST00000526025 PSG8Q9UQ74 426 aa14.99□□□□□ -0.01
CD44-222ENST00000526025 DNAH7Q8WXX0 4024 aa14.98□□□□□ -0.01
CD44-222ENST00000526025 IGHV4-28A0A0C4DH34 117 aa14.98□□□□□ -0.01
CD44-222ENST00000526025 TMEM189A5PLL7 270 aa14.98□□□□□ -0.01
CD44-222ENST00000526025 S100A9P06702 114 aaKnown RBP14.98□□□□□ -0.01
CD44-222ENST00000526025 BCL2P10415 239 aa14.98□□□□□ -0.01
CD44-222ENST00000526025 SAPCD1Q5SSQ6 148 aa14.98□□□□□ -0.01
CD44-222ENST00000526025 FMC1Q96HJ9 113 aa14.98□□□□□ -0.01
CD44-222ENST00000526025 LINC00467Q9BRT7 94 aa14.98□□□□□ -0.01
CD44-222ENST00000526025 IGHV3OR16-12A0A075B7B8 117 aa14.97□□□□□ -0.01
CD44-222ENST00000526025 A0A0J9YWU9 116 aa14.97□□□□□ -0.01
CD44-222ENST00000526025 ZNF324O75467 553 aaPredicted RBP14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms