RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 IZUMO1RA6ND01 250 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 FAM24AA6NFZ4 105 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 KNCNA6PVL3 124 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 A8MWV9 139 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 OOSP1A8MZH6 123 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 CCL21O00585 134 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 NUPR1O60356 82 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 PGLYRP1O75594 196 aaPredicted RBP1.19□□□□□ -2.22
NUP54-208ENST00000508604 LYZL6O75951 148 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 NDUFB2O95178 105 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 RBP4P02753 201 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 PRH1P02810 166 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 CD3DP04234 171 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 COX5AP20674 150 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 CBLN1P23435 193 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 FKBP2P26885 142 aaKnown RBP1.19□□□□□ -2.22
NUP54-208ENST00000508604 PTGDSP41222 190 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 UBE2G1P62253 170 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 SNRPFP62306 86 aaKnown RBP1.19□□□□□ -2.22
NUP54-208ENST00000508604 WFDC2Q14508 124 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 CDK5R1Q15078 307 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 RTL8BQ17RB0 113 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 KRTAP13-2Q52LG2 175 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 CFAP126Q5VTH2 177 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 C12orf73Q69YU5 71 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 RPL7L1Q6DKI1 246 aaKnown RBP1.19□□□□□ -2.22
NUP54-208ENST00000508604 C22orf39Q6P5X5 142 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 BAGE3Q86Y29 109 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 BAGE2Q86Y30 109 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 SBSPONQ8IVN8 264 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 MSRB3Q8IXL7 192 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 PIANPQ8IYJ0 282 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 DRAM1Q8N682 238 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 OR8B3Q8NGG8 313 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 NT5CQ8TCD5 201 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 LINC01600Q96MT4 127 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 OR2A5Q96R48 311 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 OR8B2Q96RD0 313 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 SHANK2-AS3Q9BTD1 123 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 GNB1LQ9BYB4 327 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 AICDAQ9GZX7 198 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 FAM60AQ9NP50 221 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 DAZ1Q9NQZ3 744 aaKnown RBP1.19□□□□□ -2.22
NUP54-208ENST00000508604 HIGD1BQ9P298 99 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 COL5A3P25940 1745 aaPredicted RBP1.19□□□□□ -2.22
NUP54-208ENST00000508604 NRAPQ86VF7 1730 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 DSPPQ9NZW4 1301 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 STRCP1A6NGW2 1772 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 ARFGEF1Q9Y6D6 1849 aa1.19□□□□□ -2.22
NUP54-208ENST00000508604 HEATR5AQ86XA9 2040 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 NINQ8N4C6 2090 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 PIKFYVEQ9Y2I7 2098 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 SCN7AQ01118 1682 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 ROBO1Q9Y6N7 1651 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 MAST2Q6P0Q8 1798 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 SIP14410 1827 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 CPAMD8Q8IZJ3 1885 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 TRAV8-2A0A0B4J237 113 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 A0A0J9YW62 118 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 IGHV3-64DA0A0J9YX35 117 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 NCBP2LA6PVI3 153 aaKnown RBP1.18□□□□□ -2.22
NUP54-208ENST00000508604 A8MWL6 223 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 SMKR1H3BMG3 65 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 H3BT86 120 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 ATOX1O00244 68 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 CST7O76096 145 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 GYPBP06028 91 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 ACYP1P07311 99 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 SCGB1C2P0DMR2 95 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 COX6A1P12074 109 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 IL3RAP26951 378 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 CXCL5P42830 114 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 CAV3P56539 151 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 HBG1P69891 147 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 HBG2P69892 147 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 QRFPP83859 136 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 LGALS9BQ3B8N2 356 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 ABCA11PQ4W5N1 156 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 FAM78AQ5JUQ0 283 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 SCGB1D4Q6XE38 83 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 Q6ZS49 121 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 C2orf91Q6ZV80 131 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 DAZ4Q86SG3 579 aaKnown RBP1.18□□□□□ -2.22
NUP54-208ENST00000508604 TRAPPC6BQ86SZ2 158 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 TMEM150AQ86TG1 271 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 AMN1Q8IY45 258 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 LINC00311Q8N616 119 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 OR10G2Q8NGC3 310 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 CLDND2Q8NHS1 167 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 LMX1AQ8TE12 382 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 IL1F10Q8WWZ1 152 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 FGF13Q92913 245 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 FGF11Q92914 225 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 EEF1AKMT3Q96AZ1 226 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 RNF185Q96GF1 192 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 C2orf50Q96LR7 162 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 GPX7Q96SL4 187 aaPredicted RBP1.18□□□□□ -2.22
NUP54-208ENST00000508604 NMNAT3Q96T66 252 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 MGST2Q99735 147 aa1.18□□□□□ -2.22
NUP54-208ENST00000508604 SLC39A9Q9NUM3 307 aa1.18□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms