RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 IGHV1OR15-1A0A075B7D0 117 aa13.18□□□□□ -0.3
PCDHA1-203ENST00000504120 TPSG1Q9NRR2 321 aa13.18□□□□□ -0.3
PCDHA1-203ENST00000504120 I3L3M4 83 aa13.18□□□□□ -0.3
PCDHA1-203ENST00000504120 C11orf52Q96A22 123 aa13.18□□□□□ -0.3
PCDHA1-203ENST00000504120 MMP23AO75900 390 aa13.18□□□□□ -0.3
PCDHA1-203ENST00000504120 ZFAND6Q6FIF0 208 aa13.18□□□□□ -0.3
PCDHA1-203ENST00000504120 Q8NFD4 153 aa13.18□□□□□ -0.3
PCDHA1-203ENST00000504120 XCL2Q9UBD3 114 aa13.18□□□□□ -0.3
PCDHA1-203ENST00000504120 FER1L5A0AVI2 2057 aa13.18□□□□□ -0.3
PCDHA1-203ENST00000504120 CACNA1GO43497 2377 aa13.17□□□□□ -0.3
PCDHA1-203ENST00000504120 POLEQ07864 2286 aa13.17□□□□□ -0.3
PCDHA1-203ENST00000504120 IGLC1P0CG04 106 aa13.17□□□□□ -0.3
PCDHA1-203ENST00000504120 MRPL51Q4U2R6 128 aaKnown RBP13.17□□□□□ -0.3
PCDHA1-203ENST00000504120 C8orf31Q8N9H6 132 aa13.17□□□□□ -0.3
PCDHA1-203ENST00000504120 KNCNA6PVL3 124 aa13.16□□□□□ -0.3
PCDHA1-203ENST00000504120 K7EM74 188 aa13.16□□□□□ -0.3
PCDHA1-203ENST00000504120 PMVKQ15126 192 aa13.16□□□□□ -0.3
PCDHA1-203ENST00000504120 A0A1B0GUS0 222 aa13.16□□□□□ -0.3
PCDHA1-203ENST00000504120 DEFB121Q5J5C9 76 aa13.16□□□□□ -0.3
PCDHA1-203ENST00000504120 DNAJC30Q96LL9 226 aa13.16□□□□□ -0.3
PCDHA1-203ENST00000504120 HELZP42694 1942 aaKnown RBP13.15□□□□□ -0.3
PCDHA1-203ENST00000504120 WIPF3A6NGB9 483 aa13.15□□□□□ -0.3
PCDHA1-203ENST00000504120 CDKN1BP46527 198 aa13.15□□□□□ -0.3
PCDHA1-203ENST00000504120 FXYD5Q96DB9 178 aa13.15□□□□□ -0.3
PCDHA1-203ENST00000504120 KLK9Q9UKQ9 250 aa13.15□□□□□ -0.3
PCDHA1-203ENST00000504120 COL6A6A6NMZ7 2263 aa13.15□□□□□ -0.3
PCDHA1-203ENST00000504120 SSBP2P81877 361 aaPredicted RBP13.15□□□□□ -0.3
PCDHA1-203ENST00000504120 SLAQ13239 276 aa13.15□□□□□ -0.3
PCDHA1-203ENST00000504120 IL15RAQ13261 267 aa13.15□□□□□ -0.3
PCDHA1-203ENST00000504120 PIP4P1Q86T03 277 aa13.15□□□□□ -0.3
PCDHA1-203ENST00000504120 TRAV8-3A0A0A6YYJ7 113 aa13.14□□□□□ -0.31
PCDHA1-203ENST00000504120 NDUFS6O75380 124 aaKnown RBP13.14□□□□□ -0.31
PCDHA1-203ENST00000504120 ANXA2RQ3ZCQ2 193 aa13.14□□□□□ -0.31
PCDHA1-203ENST00000504120 COX11Q9Y6N1 276 aa13.14□□□□□ -0.31
PCDHA1-203ENST00000504120 PRR20EP86478 221 aa13.14□□□□□ -0.31
PCDHA1-203ENST00000504120 PRR20CP86479 221 aa13.14□□□□□ -0.31
PCDHA1-203ENST00000504120 PRR20DP86480 221 aa13.14□□□□□ -0.31
PCDHA1-203ENST00000504120 PRR20BP86481 221 aa13.14□□□□□ -0.31
PCDHA1-203ENST00000504120 PRR20AP86496 221 aa13.14□□□□□ -0.31
PCDHA1-203ENST00000504120 SDHAF1A6NFY7 115 aa13.14□□□□□ -0.31
PCDHA1-203ENST00000504120 TCTEX1D4Q5JR98 221 aa13.14□□□□□ -0.31
PCDHA1-203ENST00000504120 TRBV25-1A0A075B6N4 114 aa13.14□□□□□ -0.31
PCDHA1-203ENST00000504120 GAGE12JA6NER3 117 aa13.14□□□□□ -0.31
PCDHA1-203ENST00000504120 GAGE1Q13065 139 aa13.14□□□□□ -0.31
PCDHA1-203ENST00000504120 GAGE4Q13068 117 aa13.14□□□□□ -0.31
PCDHA1-203ENST00000504120 GAGE5Q13069 117 aa13.14□□□□□ -0.31
PCDHA1-203ENST00000504120 DIAPH2-AS1Q14236 149 aa13.14□□□□□ -0.31
PCDHA1-203ENST00000504120 PRSS57Q6UWY2 283 aa13.13□□□□□ -0.31
PCDHA1-203ENST00000504120 Q96MF0 132 aa13.13□□□□□ -0.31
PCDHA1-203ENST00000504120 GAGE12BA1L429 117 aa13.13□□□□□ -0.31
PCDHA1-203ENST00000504120 ZNF114Q8NC26 417 aa13.13□□□□□ -0.31
PCDHA1-203ENST00000504120 C1orf122Q6ZSJ8 110 aa13.13□□□□□ -0.31
PCDHA1-203ENST00000504120 PSCAO43653 123 aa13.13□□□□□ -0.31
PCDHA1-203ENST00000504120 MAPK1IP1LQ8NDC0 245 aa13.13□□□□□ -0.31
PCDHA1-203ENST00000504120 CR1LQ2VPA4 569 aa13.12□□□□□ -0.31
PCDHA1-203ENST00000504120 EREGO14944 169 aa13.12□□□□□ -0.31
PCDHA1-203ENST00000504120 AZU1P20160 251 aa13.12□□□□□ -0.31
PCDHA1-203ENST00000504120 ZC2HC1AQ96GY0 325 aa13.12□□□□□ -0.31
PCDHA1-203ENST00000504120 PKDREJQ9NTG1 2253 aa13.12□□□□□ -0.31
PCDHA1-203ENST00000504120 KIAA1671Q9BY89 1806 aa13.12□□□□□ -0.31
PCDHA1-203ENST00000504120 LGALS9BQ3B8N2 356 aa13.12□□□□□ -0.31
PCDHA1-203ENST00000504120 LGALS9CQ6DKI2 356 aa13.12□□□□□ -0.31
PCDHA1-203ENST00000504120 IGHV1-24A0A0C4DH33 117 aa13.12□□□□□ -0.31
PCDHA1-203ENST00000504120 H3BUA1 57 aa13.12□□□□□ -0.31
PCDHA1-203ENST00000504120 HIST1H4AP62805 103 aaKnown RBP13.12□□□□□ -0.31
PCDHA1-203ENST00000504120 OCIAD2Q56VL3 154 aa13.12□□□□□ -0.31
PCDHA1-203ENST00000504120 F8WEM9 126 aa13.12□□□□□ -0.31
PCDHA1-203ENST00000504120 C3orf56Q8N813 242 aa13.12□□□□□ -0.31
PCDHA1-203ENST00000504120 DOPEY2Q9Y3R5 2298 aa13.11□□□□□ -0.31
PCDHA1-203ENST00000504120 SPAG8Q99932 426 aaPredicted RBP13.11□□□□□ -0.31
PCDHA1-203ENST00000504120 KLF12Q9Y4X4 402 aa13.11□□□□□ -0.31
PCDHA1-203ENST00000504120 IGHV7-4-1A0A0J9YVY3 117 aa13.11□□□□□ -0.31
PCDHA1-203ENST00000504120 C9JAW5 83 aa13.11□□□□□ -0.31
PCDHA1-203ENST00000504120 ELANEP08246 267 aa13.11□□□□□ -0.31
PCDHA1-203ENST00000504120 SRSF2Q01130 221 aaKnown RBP13.11□□□□□ -0.31
PCDHA1-203ENST00000504120 Q6ZWC4 215 aa13.11□□□□□ -0.31
PCDHA1-203ENST00000504120 INS-IGF2F8WCM5 200 aa13.1□□□□□ -0.31
PCDHA1-203ENST00000504120 ZNF491Q8N8L2 437 aa13.1□□□□□ -0.31
PCDHA1-203ENST00000504120 IGLC2P0DOY2 106 aa13.1□□□□□ -0.31
PCDHA1-203ENST00000504120 IGLC3P0DOY3 106 aa13.1□□□□□ -0.31
PCDHA1-203ENST00000504120 DAD1P61803 113 aa13.1□□□□□ -0.31
PCDHA1-203ENST00000504120 SIGLEC8Q9NYZ4 499 aa13.1□□□□□ -0.31
PCDHA1-203ENST00000504120 IGHV3-16A0A0C4DH30 117 aa13.1□□□□□ -0.31
PCDHA1-203ENST00000504120 ADAMTSL5Q6ZMM2 481 aa13.1□□□□□ -0.31
PCDHA1-203ENST00000504120 C11orf53Q8IXP5 236 aa13.1□□□□□ -0.31
PCDHA1-203ENST00000504120 RNF138Q8WVD3 245 aa13.1□□□□□ -0.31
PCDHA1-203ENST00000504120 PYGO2Q9BRQ0 406 aa13.1□□□□□ -0.31
PCDHA1-203ENST00000504120 IGHV2-5P01817 119 aa13.09□□□□□ -0.31
PCDHA1-203ENST00000504120 LTBP2Q14767 1821 aa13.09□□□□□ -0.31
PCDHA1-203ENST00000504120 TRAV26-2A0A0B4J265 109 aa13.09□□□□□ -0.31
PCDHA1-203ENST00000504120 LTAP01374 205 aa13.09□□□□□ -0.31
PCDHA1-203ENST00000504120 SMIM2Q9BVW6 85 aa13.09□□□□□ -0.31
PCDHA1-203ENST00000504120 NBL1P41271 181 aa13.09□□□□□ -0.31
PCDHA1-203ENST00000504120 VWC2Q2TAL6 325 aa13.09□□□□□ -0.31
PCDHA1-203ENST00000504120 DIDO1Q9BTC0 2240 aaKnown RBP13.09□□□□□ -0.31
PCDHA1-203ENST00000504120 ZNF407Q9C0G0 2248 aa13.09□□□□□ -0.31
PCDHA1-203ENST00000504120 TRAV12-2A0A075B6T6 113 aa13.08□□□□□ -0.31
PCDHA1-203ENST00000504120 SHISA9B4DS77 424 aa13.08□□□□□ -0.31
PCDHA1-203ENST00000504120 TRBV20-1A0A075B6N2 111 aa13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 IGLC7A0M8Q6 106 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms