RNA–Protein interactions for RNA: ENST00000496081.5

HLA-A-208, Transcript of major histocompatibility complex, class I, A, humanhuman

Gene HLA-A, Length 1,786 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-A-208ENST00000496081 DUX3Q96PT4 197 aa12.39□□□□□ -0.43
HLA-A-208ENST00000496081 TEP1Q99973 2627 aaKnown RBP12.39□□□□□ -0.43
HLA-A-208ENST00000496081 C2orf70A6NJV1 201 aa12.38□□□□□ -0.43
HLA-A-208ENST00000496081 NDUFA7O95182 113 aa12.38□□□□□ -0.43
HLA-A-208ENST00000496081 P01737 135 aa12.38□□□□□ -0.43
HLA-A-208ENST00000496081 CBLN1P23435 193 aa12.38□□□□□ -0.43
HLA-A-208ENST00000496081 CRIP1P50238 77 aa12.38□□□□□ -0.43
HLA-A-208ENST00000496081 TCL1AP56279 114 aa12.38□□□□□ -0.43
HLA-A-208ENST00000496081 SAPCD1Q5SSQ6 148 aa12.38□□□□□ -0.43
HLA-A-208ENST00000496081 COX8CQ7Z4L0 72 aa12.38□□□□□ -0.43
HLA-A-208ENST00000496081 DPF1Q92782 380 aa12.38□□□□□ -0.43
HLA-A-208ENST00000496081 DAZAP1Q96EP5 407 aaKnown RBP12.38□□□□□ -0.43
HLA-A-208ENST00000496081 RPP21Q9H633 154 aaKnown RBP12.38□□□□□ -0.43
HLA-A-208ENST00000496081 NPIPB6E9PJ23 425 aa12.38□□□□□ -0.43
HLA-A-208ENST00000496081 SETD2Q9BYW2 2564 aaPredicted RBP12.37□□□□□ -0.43
HLA-A-208ENST00000496081 HAX1O00165 279 aa12.37□□□□□ -0.43
HLA-A-208ENST00000496081 GPR61Q9BZJ8 451 aa12.37□□□□□ -0.43
HLA-A-208ENST00000496081 AGPAT4-IT1Q9H0P7 198 aa12.37□□□□□ -0.43
HLA-A-208ENST00000496081 FN1P02751 2386 aaKnown RBP12.36□□□□□ -0.43
HLA-A-208ENST00000496081 PHOX2AO14813 284 aa12.36□□□□□ -0.43
HLA-A-208ENST00000496081 CT83Q5H943 113 aa12.36□□□□□ -0.43
HLA-A-208ENST00000496081 ADAMTSL5Q6ZMM2 481 aa12.36□□□□□ -0.43
HLA-A-208ENST00000496081 ZNF738Q8NE65 137 aa12.36□□□□□ -0.43
HLA-A-208ENST00000496081 DCANP1Q8TF63 244 aa12.36□□□□□ -0.43
HLA-A-208ENST00000496081 TSKUQ8WUA8 353 aa12.36□□□□□ -0.43
HLA-A-208ENST00000496081 CT45A10P0DMU9 189 aa12.35□□□□□ -0.43
HLA-A-208ENST00000496081 C9orf47Q6ZRZ4 202 aa12.35□□□□□ -0.43
HLA-A-208ENST00000496081 DLX4Q92988 240 aaPredicted RBP12.35□□□□□ -0.43
HLA-A-208ENST00000496081 CITED2Q99967 270 aaPredicted RBP12.35□□□□□ -0.43
HLA-A-208ENST00000496081 RNF114Q9Y508 228 aa12.35□□□□□ -0.43
HLA-A-208ENST00000496081 A0A1W2PRX2 142 aa12.35□□□□□ -0.43
HLA-A-208ENST00000496081 TCF21O43680 179 aa12.35□□□□□ -0.43
HLA-A-208ENST00000496081 OR4B1Q8NGF8 309 aa12.35□□□□□ -0.43
HLA-A-208ENST00000496081 FRZBQ92765 325 aa12.35□□□□□ -0.43
HLA-A-208ENST00000496081 RAX2Q96IS3 184 aa12.35□□□□□ -0.43
HLA-A-208ENST00000496081 NEU1Q99519 415 aa12.35□□□□□ -0.43
HLA-A-208ENST00000496081 NDFIP1Q9BT67 221 aa12.35□□□□□ -0.43
HLA-A-208ENST00000496081 MS4A6AQ9H2W1 248 aa12.35□□□□□ -0.43
HLA-A-208ENST00000496081 IZUMO1RA6ND01 250 aa12.34□□□□□ -0.43
HLA-A-208ENST00000496081 A8MWL6 223 aa12.34□□□□□ -0.43
HLA-A-208ENST00000496081 SPINK4O60575 86 aa12.34□□□□□ -0.43
HLA-A-208ENST00000496081 CRLF1O75462 422 aa12.34□□□□□ -0.43
HLA-A-208ENST00000496081 FRMD6-AS1P0C7T7 363 aa12.34□□□□□ -0.43
HLA-A-208ENST00000496081 ZNF705DP0CH99 300 aaPredicted RBP12.34□□□□□ -0.43
HLA-A-208ENST00000496081 ZNF705BP0CI00 300 aaPredicted RBP12.34□□□□□ -0.43
HLA-A-208ENST00000496081 PROK1P58294 105 aa12.34□□□□□ -0.43
HLA-A-208ENST00000496081 TMEM78Q5T7P6 136 aa12.34□□□□□ -0.43
HLA-A-208ENST00000496081 OR9G4Q8NGQ1 327 aa12.34□□□□□ -0.43
HLA-A-208ENST00000496081 NAT8BQ9UHF3 227 aa12.34□□□□□ -0.43
HLA-A-208ENST00000496081 TSSC4Q9Y5U2 329 aaPredicted RBP12.34□□□□□ -0.43
HLA-A-208ENST00000496081 OVOL1O14753 267 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 ZNF80P51504 273 aaPredicted RBP12.33□□□□□ -0.44
HLA-A-208ENST00000496081 ZNF138P52744 262 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 SRSF2Q01130 221 aaKnown RBP12.33□□□□□ -0.44
HLA-A-208ENST00000496081 ACTL10Q5JWF8 245 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 WFDC3Q8IUB2 231 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 NUP35Q8NFH5 326 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 OR2D3Q8NGH3 330 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 PEMTQ9UBM1 199 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 HIGD1CA8MV81 97 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 M0QZ24 198 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 HIST1H2BKO60814 126 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 SH2D1AO60880 128 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 HIST1H2BJP06899 126 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 HIST1H2BOP23527 126 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 HIST1H2BBP33778 126 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 HIST1H2BDP58876 126 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 DEFB1P60022 68 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 HIST1H2BCP62807 126 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 FHL3Q13643 280 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 HIST2H2BEQ16778 126 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 SMUG1Q53HV7 270 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.33□□□□□ -0.44
HLA-A-208ENST00000496081 FAM162BQ5T6X4 162 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 SAMD13Q5VXD3 122 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 GTSF1Q8WW33 167 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 HIST1H2BHQ93079 126 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 HIST1H2BNQ99877 126 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 HIST1H2BMQ99879 126 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 PPP1R14DQ9NXH3 145 aa12.33□□□□□ -0.44
HLA-A-208ENST00000496081 TRGC1P0CF51 173 aa12.32□□□□□ -0.44
HLA-A-208ENST00000496081 ID1P41134 155 aa12.32□□□□□ -0.44
HLA-A-208ENST00000496081 RPL19P84098 196 aaKnown RBP12.32□□□□□ -0.44
HLA-A-208ENST00000496081 GFRA4Q9GZZ7 299 aa12.32□□□□□ -0.44
HLA-A-208ENST00000496081 CCL24O00175 119 aa12.31□□□□□ -0.44
HLA-A-208ENST00000496081 TFPI2P48307 235 aa12.31□□□□□ -0.44
HLA-A-208ENST00000496081 FABP9Q0Z7S8 132 aa12.31□□□□□ -0.44
HLA-A-208ENST00000496081 MRPL54Q6P161 138 aaKnown RBP12.31□□□□□ -0.44
HLA-A-208ENST00000496081 OR10J6PQ8NGY7 276 aa12.31□□□□□ -0.44
HLA-A-208ENST00000496081 TRAPPC1Q9Y5R8 145 aa12.31□□□□□ -0.44
HLA-A-208ENST00000496081 FAM231BA6NCW3 169 aa12.3□□□□□ -0.44
HLA-A-208ENST00000496081 F6UB75 175 aa12.3□□□□□ -0.44
HLA-A-208ENST00000496081 K7EQG2 157 aa12.3□□□□□ -0.44
HLA-A-208ENST00000496081 CSN3P07498 182 aa12.3□□□□□ -0.44
HLA-A-208ENST00000496081 GZMBP10144 247 aa12.3□□□□□ -0.44
HLA-A-208ENST00000496081 OR8A1Q8NGG7 326 aa12.3□□□□□ -0.44
HLA-A-208ENST00000496081 LINC00477Q96M19 166 aa12.3□□□□□ -0.44
HLA-A-208ENST00000496081 S100A6P06703 90 aa12.3□□□□□ -0.44
HLA-A-208ENST00000496081 SNRPEP62304 92 aaKnown RBP12.29□□□□□ -0.44
HLA-A-208ENST00000496081 GNB1LQ9BYB4 327 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 189.3 ms