RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 C2CD4CQ8TF44 421 aa5.25□□□□□ -1.57
SYNE1-229ENST00000490866 DCANP1Q8TF63 244 aa5.25□□□□□ -1.57
SYNE1-229ENST00000490866 ASCL2Q99929 193 aa5.25□□□□□ -1.57
SYNE1-229ENST00000490866 PARLQ9H300 379 aa5.25□□□□□ -1.57
SYNE1-229ENST00000490866 SAV1Q9H4B6 383 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-229ENST00000490866 TUBA4BQ9H853 241 aa5.25□□□□□ -1.57
SYNE1-229ENST00000490866 SDF2L1Q9HCN8 221 aa5.25□□□□□ -1.57
SYNE1-229ENST00000490866 ANK3Q12955 4377 aaKnown RBP5.25□□□□□ -1.57
SYNE1-229ENST00000490866 FAM231BA6NCW3 169 aa5.24□□□□□ -1.57
SYNE1-229ENST00000490866 SOCS3O14543 225 aa5.24□□□□□ -1.57
SYNE1-229ENST00000490866 ATP6V1G1O75348 118 aa5.24□□□□□ -1.57
SYNE1-229ENST00000490866 LTAP01374 205 aa5.24□□□□□ -1.57
SYNE1-229ENST00000490866 ATP5G3P48201 142 aa5.24□□□□□ -1.57
SYNE1-229ENST00000490866 SRSF2Q01130 221 aaKnown RBP5.24□□□□□ -1.57
SYNE1-229ENST00000490866 FLI1Q01543 452 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-229ENST00000490866 DEFB136Q30KP8 78 aa5.24□□□□□ -1.57
SYNE1-229ENST00000490866 KRTAP21-3Q3LHN1 58 aa5.24□□□□□ -1.57
SYNE1-229ENST00000490866 GTSCR1Q86UQ5 136 aa5.24□□□□□ -1.57
SYNE1-229ENST00000490866 EXOC3-AS1Q8N2X6 119 aa5.24□□□□□ -1.57
SYNE1-229ENST00000490866 ZNF738Q8NE65 137 aa5.24□□□□□ -1.57
SYNE1-229ENST00000490866 C20orf144Q9BQM9 153 aa5.24□□□□□ -1.57
SYNE1-229ENST00000490866 TRAV9-1A0A075B6T8 112 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 IGHV3OR16-8A0A075B7F1 116 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 IGHV3-66A0A0C4DH42 116 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 FABP5P3A8MUU1 101 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 M0R036 132 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 GCGP01275 180 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 S100PP25815 95 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 LEPP41159 167 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 ZNF138P52744 262 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 CEBPGP53567 150 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 RPS20P60866 119 aaKnown RBP5.23□□□□□ -1.57
SYNE1-229ENST00000490866 ZNF674Q2M3X9 581 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 CD300EQ496F6 205 aaPredicted RBP5.23□□□□□ -1.57
SYNE1-229ENST00000490866 SMUG1Q53HV7 270 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 Q6AWC8 147 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 MORN3Q6PF18 240 aaPredicted RBP5.23□□□□□ -1.57
SYNE1-229ENST00000490866 KCNIP4Q6PIL6 250 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 GOLT1AQ6ZVE7 132 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 FAM231DQ6ZW35 169 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 PRIMA1Q86XR5 153 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 OR4B1Q8NGF8 309 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 OR8A1Q8NGG7 326 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 LINC00052Q96N35 136 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 C1QTNF4Q9BXJ3 329 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 ZNF492Q9P255 531 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 PSG8Q9UQ74 426 aa5.23□□□□□ -1.57
SYNE1-229ENST00000490866 WNK1Q9H4A3 2382 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 CUBNO60494 3623 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 IGHV3OR16-13A0A075B7E8 117 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 IGHV3-49A0A0A0MS15 119 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 IGHV3-74A0A0B4J1X5 117 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 TRAV8-2A0A0B4J237 113 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 CYSRT1A8MQ03 144 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 A8MWL6 223 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 OR11H12B2RN74 326 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 NPIPB6E9PJ23 425 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 CRISP2P16562 243 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 ERVFC1-1P60608 527 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 SRSF3P84103 164 aaKnown RBP5.22□□□□□ -1.57
SYNE1-229ENST00000490866 HIST1H1AQ02539 215 aaPredicted RBP5.22□□□□□ -1.57
SYNE1-229ENST00000490866 BEAN1Q3B7T3 259 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 COX19Q49B96 90 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 CT83Q5H943 113 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 FAM162BQ5T6X4 162 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 C18orf65Q6ZTR6 163 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 LINC01551Q86U37 167 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 TMEM61Q8N0U2 210 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 CLRN3Q8NCR9 226 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 SPATA3Q8NHX4 192 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 OCC1Q8TAD7 63 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 KCNS1Q96KK3 526 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 C17orf77Q96MU5 243 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 PRR25Q96S07 402 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 MLST8Q9BVC4 326 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 GFRA4Q9GZZ7 299 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 OSTCQ9NRP0 149 aa5.22□□□□□ -1.57
SYNE1-229ENST00000490866 COL6A5A8TX70 2615 aa5.21□□□□□ -1.58
SYNE1-229ENST00000490866 C9JQL5 133 aa5.21□□□□□ -1.58
SYNE1-229ENST00000490866 SLC17A3O00476 420 aa5.21□□□□□ -1.58
SYNE1-229ENST00000490866 GPX1P07203 203 aa5.21□□□□□ -1.58
SYNE1-229ENST00000490866 KRTAP10-3P60369 221 aa5.21□□□□□ -1.58
SYNE1-229ENST00000490866 RPL23P62829 140 aaKnown RBP5.21□□□□□ -1.58
SYNE1-229ENST00000490866 GUCA2BQ16661 112 aa5.21□□□□□ -1.58
SYNE1-229ENST00000490866 CENPWQ5EE01 88 aa5.21□□□□□ -1.58
SYNE1-229ENST00000490866 PSMG4Q5JS54 123 aa5.21□□□□□ -1.58
SYNE1-229ENST00000490866 IBA57Q5T440 356 aaKnown RBP5.21□□□□□ -1.58
SYNE1-229ENST00000490866 PRNTQ86SH4 94 aa5.21□□□□□ -1.58
SYNE1-229ENST00000490866 STHQ8IWL8 128 aa5.21□□□□□ -1.58
SYNE1-229ENST00000490866 TMEM256Q8N2U0 113 aa5.21□□□□□ -1.58
SYNE1-229ENST00000490866 GBGT1Q8N5D6 347 aa5.21□□□□□ -1.58
SYNE1-229ENST00000490866 OR10G8Q8NGN5 311 aa5.21□□□□□ -1.58
SYNE1-229ENST00000490866 SFRP2Q96HF1 295 aa5.21□□□□□ -1.58
SYNE1-229ENST00000490866 DUX3Q96PT4 197 aa5.21□□□□□ -1.58
SYNE1-229ENST00000490866 SMCO4Q9NRQ5 59 aa5.21□□□□□ -1.58
SYNE1-229ENST00000490866 ZNF256Q9Y2P7 627 aaPredicted RBP5.21□□□□□ -1.58
SYNE1-229ENST00000490866 SORL1Q92673 2214 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 TRAV21A0A0B4J279 112 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 A0A0J9YX75 114 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 A0A1B0GW15 77 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms