RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 CTDSP1Q9GZU7 261 aa16.25■□□□□ 0.19
SMC4-221ENST00000489573 TRAV25A0A0B4J276 109 aa16.24■□□□□ 0.19
SMC4-221ENST00000489573 ERCC8Q13216 396 aa16.24■□□□□ 0.19
SMC4-221ENST00000489573 ANAPC16Q96DE5 110 aa16.24■□□□□ 0.19
SMC4-221ENST00000489573 SMCO4Q9NRQ5 59 aa16.24■□□□□ 0.19
SMC4-221ENST00000489573 SAP30O75446 220 aa16.23■□□□□ 0.19
SMC4-221ENST00000489573 ZNF688P0C7X2 276 aa16.23■□□□□ 0.19
SMC4-221ENST00000489573 BIN3Q9NQY0 253 aa16.23■□□□□ 0.19
SMC4-221ENST00000489573 PPP1R2P9O14990 202 aa16.22■□□□□ 0.19
SMC4-221ENST00000489573 PSMG4Q5JS54 123 aa16.22■□□□□ 0.19
SMC4-221ENST00000489573 SAPCD1Q5SSQ6 148 aa16.22■□□□□ 0.19
SMC4-221ENST00000489573 TMEM78Q5T7P6 136 aa16.22■□□□□ 0.19
SMC4-221ENST00000489573 C9orf47Q6ZRZ4 202 aa16.22■□□□□ 0.19
SMC4-221ENST00000489573 OR10J6PQ8NGY7 276 aa16.22■□□□□ 0.19
SMC4-221ENST00000489573 Q8TAT8 98 aa16.22■□□□□ 0.19
SMC4-221ENST00000489573 ASCL2Q99929 193 aa16.22■□□□□ 0.19
SMC4-221ENST00000489573 SPAG8Q99932 426 aaPredicted RBP16.22■□□□□ 0.19
SMC4-221ENST00000489573 AGPAT4-IT1Q9H0P7 198 aa16.22■□□□□ 0.19
SMC4-221ENST00000489573 TMEM242Q9NWH2 141 aa16.22■□□□□ 0.19
SMC4-221ENST00000489573 FBN1P35555 2871 aaKnown RBP16.22■□□□□ 0.19
SMC4-221ENST00000489573 H7BYZ3 331 aa16.21■□□□□ 0.19
SMC4-221ENST00000489573 ERVFC1-1P60608 527 aa16.21■□□□□ 0.19
SMC4-221ENST00000489573 OR10G8Q8NGN5 311 aa16.21■□□□□ 0.19
SMC4-221ENST00000489573 NDFIP1Q9BT67 221 aa16.21■□□□□ 0.19
SMC4-221ENST00000489573 PRR27Q6MZM9 219 aa16.21■□□□□ 0.18
SMC4-221ENST00000489573 C15orf54Q8N8G6 183 aa16.21■□□□□ 0.18
SMC4-221ENST00000489573 OR8A1Q8NGG7 326 aa16.21■□□□□ 0.18
SMC4-221ENST00000489573 PRR25Q96S07 402 aa16.21■□□□□ 0.18
SMC4-221ENST00000489573 OSTCQ9NRP0 149 aa16.21■□□□□ 0.18
SMC4-221ENST00000489573 NPIPB6E9PJ23 425 aa16.2■□□□□ 0.18
SMC4-221ENST00000489573 ZNF138P52744 262 aa16.2■□□□□ 0.18
SMC4-221ENST00000489573 DEFB1P60022 68 aa16.2■□□□□ 0.18
SMC4-221ENST00000489573 ZNF747Q9BV97 191 aa16.2■□□□□ 0.18
SMC4-221ENST00000489573 OR4C46A6NHA9 309 aa16.19■□□□□ 0.18
SMC4-221ENST00000489573 F6UB75 175 aa16.19■□□□□ 0.18
SMC4-221ENST00000489573 ZNF705DP0CH99 300 aaPredicted RBP16.19■□□□□ 0.18
SMC4-221ENST00000489573 ZNF705BP0CI00 300 aaPredicted RBP16.19■□□□□ 0.18
SMC4-221ENST00000489573 HIST1H1AQ02539 215 aaPredicted RBP16.19■□□□□ 0.18
SMC4-221ENST00000489573 IBA57Q5T440 356 aaKnown RBP16.19■□□□□ 0.18
SMC4-221ENST00000489573 FAM231DQ6ZW35 169 aa16.19■□□□□ 0.18
SMC4-221ENST00000489573 ZC2HC1AQ96GY0 325 aa16.19■□□□□ 0.18
SMC4-221ENST00000489573 C8orf49Q96NF6 230 aa16.19■□□□□ 0.18
SMC4-221ENST00000489573 GPR61Q9BZJ8 451 aa16.19■□□□□ 0.18
SMC4-221ENST00000489573 RNASE7Q9H1E1 156 aaKnown RBP16.19■□□□□ 0.18
SMC4-221ENST00000489573 TUBA4BQ9H853 241 aa16.19■□□□□ 0.18
SMC4-221ENST00000489573 PPP1R14DQ9NXH3 145 aa16.19■□□□□ 0.18
SMC4-221ENST00000489573 ZNF492Q9P255 531 aa16.19■□□□□ 0.18
SMC4-221ENST00000489573 CXorf65A6NEN9 183 aa16.18■□□□□ 0.18
SMC4-221ENST00000489573 COX8CQ7Z4L0 72 aa16.18■□□□□ 0.18
SMC4-221ENST00000489573 OR2K2Q8NGT1 345 aa16.18■□□□□ 0.18
SMC4-221ENST00000489573 LINC00477Q96M19 166 aa16.18■□□□□ 0.18
SMC4-221ENST00000489573 MDFIQ99750 246 aa16.18■□□□□ 0.18
SMC4-221ENST00000489573 IZUMO1RA6ND01 250 aa16.17■□□□□ 0.18
SMC4-221ENST00000489573 IGLV1-51P01701 117 aa16.17■□□□□ 0.18
SMC4-221ENST00000489573 CT45A10P0DMU9 189 aa16.17■□□□□ 0.18
SMC4-221ENST00000489573 LINC00322Q6ZN03 302 aaPredicted RBP16.17■□□□□ 0.18
SMC4-221ENST00000489573 TMEM158Q8WZ71 300 aa16.17■□□□□ 0.18
SMC4-221ENST00000489573 NUDT10Q8NFP7 164 aa16.16■□□□□ 0.18
SMC4-221ENST00000489573 NUDT11Q96G61 164 aa16.16■□□□□ 0.18
SMC4-221ENST00000489573 ZNF256Q9Y2P7 627 aaPredicted RBP16.16■□□□□ 0.18
SMC4-221ENST00000489573 LENEPQ9Y5L5 61 aa16.16■□□□□ 0.18
SMC4-221ENST00000489573 V9GYV3 84 aa16.16■□□□□ 0.18
SMC4-221ENST00000489573 WNK1Q9H4A3 2382 aa16.15■□□□□ 0.18
SMC4-221ENST00000489573 C19orf71A6NCJ1 209 aa16.15■□□□□ 0.18
SMC4-221ENST00000489573 SMUG1Q53HV7 270 aa16.15■□□□□ 0.18
SMC4-221ENST00000489573 C12orf54Q6X4T0 127 aa16.15■□□□□ 0.18
SMC4-221ENST00000489573 C3orf56Q8N813 242 aa16.15■□□□□ 0.18
SMC4-221ENST00000489573 DAZAP1Q96EP5 407 aaKnown RBP16.15■□□□□ 0.18
SMC4-221ENST00000489573 A0A0J9YX75 114 aa16.14■□□□□ 0.17
SMC4-221ENST00000489573 ZNF705GA8MUZ8 300 aaPredicted RBP16.14■□□□□ 0.17
SMC4-221ENST00000489573 GATCO43716 136 aaKnown RBP16.14■□□□□ 0.17
SMC4-221ENST00000489573 DEFB131AP59861 70 aa16.14■□□□□ 0.17
SMC4-221ENST00000489573 EBLN2Q6P2I7 272 aa16.14■□□□□ 0.17
SMC4-221ENST00000489573 FOXI2Q6ZQN5 318 aa16.14■□□□□ 0.17
SMC4-221ENST00000489573 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.14■□□□□ 0.17
SMC4-221ENST00000489573 P01737 135 aa16.13■□□□□ 0.17
SMC4-221ENST00000489573 GDF5OSQ5U4N7 250 aa16.13■□□□□ 0.17
SMC4-221ENST00000489573 SAV1Q9H4B6 383 aaPredicted RBP16.13■□□□□ 0.17
SMC4-221ENST00000489573 MAP6D1Q9H9H5 199 aa16.13■□□□□ 0.17
SMC4-221ENST00000489573 URGCP-MRPS24S4R325 110 aa16.13■□□□□ 0.17
SMC4-221ENST00000489573 CD33P20138 364 aa16.13■□□□□ 0.17
SMC4-221ENST00000489573 CRIP1P50238 77 aa16.13■□□□□ 0.17
SMC4-221ENST00000489573 SHISA2Q6UWI4 295 aa16.13■□□□□ 0.17
SMC4-221ENST00000489573 TRBV7-9A0A0J9YWB2 115 aa16.12■□□□□ 0.17
SMC4-221ENST00000489573 DUSP14O95147 198 aaKnown RBP16.12■□□□□ 0.17
SMC4-221ENST00000489573 S100PP25815 95 aa16.12■□□□□ 0.17
SMC4-221ENST00000489573 FAM162BQ5T6X4 162 aa16.12■□□□□ 0.17
SMC4-221ENST00000489573 FAM19A4Q96LR4 140 aa16.12■□□□□ 0.17
SMC4-221ENST00000489573 YPEL4Q96NS1 127 aa16.12■□□□□ 0.17
SMC4-221ENST00000489573 IMMP2LQ96T52 175 aa16.12■□□□□ 0.17
SMC4-221ENST00000489573 RPP21Q9H633 154 aaKnown RBP16.12■□□□□ 0.17
SMC4-221ENST00000489573 IL36BQ9NZH7 164 aa16.12■□□□□ 0.17
SMC4-221ENST00000489573 INSL3P51460 131 aa16.11■□□□□ 0.17
SMC4-221ENST00000489573 KCNIP4Q6PIL6 250 aa16.11■□□□□ 0.17
SMC4-221ENST00000489573 OR4B1Q8NGF8 309 aa16.11■□□□□ 0.17
SMC4-221ENST00000489573 SH2D1AO60880 128 aa16.1■□□□□ 0.17
SMC4-221ENST00000489573 PFN1P07737 140 aaKnown RBP16.1■□□□□ 0.17
SMC4-221ENST00000489573 ZNF80P51504 273 aaPredicted RBP16.1■□□□□ 0.17
SMC4-221ENST00000489573 ELOBQ15370 118 aa16.1■□□□□ 0.17
SMC4-221ENST00000489573 C9orf66Q5T8R8 295 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms