RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, human

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4A-208	ENST00000489247	ABCA1	O95477	2261 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	SVEP1	Q4LDE5	3571 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	PRRC2A	P48634	2157 aa	Known RBP	4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247		A0A1B0GXF2	115 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	IZUMO1R	A6ND01	250 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	IFITM10	A6NMD0	228 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247		K7EMT4	169 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247		K7EQM0	130 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	GATC	O43716	136 aa	Known RBP	4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	IGHV3-23	P01764	117 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	IGHV4-59	P01825	116 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	TRGV3	P03979	118 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	NHLRC4	P0CG21	123 aa	Predicted RBP	4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	ESD	P10768	282 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	LY6E	Q16553	131 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	WDR73	Q6P4I2	378 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	CLEC19A	Q6UXS0	136 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	GOLT1A	Q6ZVE7	132 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	PRIMA1	Q86XR5	153 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	OR8I2	Q8N0Y5	310 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	HIST3H2BB	Q8N257	126 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	EXOC3-AS1	Q8N2X6	119 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	GATD1	Q8NB37	220 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	NTN5	Q8WTR8	489 aa	Predicted RBP	4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	METTL26	Q96S19	204 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	FOXC2	Q99958	501 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	RPP21	Q9H633	154 aa	Known RBP	4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	NAT8B	Q9UHF3	227 aa		4.23	□□□□□ -1.73
ATG4A-208	ENST00000489247	WNK2	Q9Y3S1	2297 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	NBPF19	A0A087WUL8	3843 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	ZNF705G	A8MUZ8	300 aa	Predicted RBP	4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247		A8MWL6	223 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247		H3BTX0	84 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247		M0R3E3	92 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	HLA-DQA1	P01909	254 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	MGST1	P10620	155 aa	Known RBP	4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	HNF1A	P20823	631 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	ARL3	P36405	182 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	CSN1S1	P47710	185 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	TPPP2	P59282	170 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247		Q0VG73	95 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	SAPCD1	Q5SSQ6	148 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	SAMD13	Q5VXD3	122 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	LINC00322	Q6ZN03	302 aa	Predicted RBP	4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	TMEM136	Q6ZRR5	245 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	GPHB5	Q86YW7	130 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	CIART	Q8N365	385 aa	Predicted RBP	4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	NUP35	Q8NFH5	326 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	PACRG	Q96M98	296 aa	Predicted RBP	4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	MS4A10	Q96PG2	267 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	ZNF702P	Q9H963	129 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	PSG8	Q9UQ74	426 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	TRAPPC1	Q9Y5R8	145 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	CHD6	Q8TD26	2715 aa		4.22	□□□□□ -1.73
ATG4A-208	ENST00000489247	TRAV8-1	A0A0A6YYK1	113 aa		4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	TRAV8-2	A0A0B4J237	113 aa		4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	TRBV7-9	A0A0J9YWB2	115 aa		4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247		A0A1W2PS18	150 aa		4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	SOCS3	O14543	225 aa		4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	CHEK1	O14757	476 aa		4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247		P01737	135 aa		4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	APOH	P02749	345 aa	Predicted RBP	4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	SNRPC	P09234	159 aa	Known RBP	4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	NDUFA6	P56556	154 aa		4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	C9orf152	Q5JTZ5	239 aa		4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247		Q6AWC8	147 aa		4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	GBGT1	Q8N5D6	347 aa		4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	NHLRC2	Q8NBF2	726 aa		4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	GTSF1	Q8WW33	167 aa		4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	ZC2HC1A	Q96GY0	325 aa		4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	NOL4L	Q96MY1	436 aa	Predicted RBP	4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	NPFFR1	Q9GZQ6	430 aa		4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	LENEP	Q9Y5L5	61 aa		4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	AKAP9	Q99996	3911 aa		4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	ASH1L	Q9NR48	2969 aa	Known RBP	4.21	□□□□□ -1.74
ATG4A-208	ENST00000489247	TACC2	O95359	2948 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	IGHV7-4-1	A0A0J9YVY3	117 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247		A0A1B0GW15	77 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	XKRY2	A2RUG3	117 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	HIGD1C	A8MV81	97 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247		A8MWP6	167 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	SNURFL	B1AK76	121 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	LGALS9	O00182	355 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	TRBV12-3	P01733	135 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	CBLN1	P23435	193 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	CRIP1	P50238	77 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	PROK1	P58294	105 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	OR10J3	Q5JRS4	329 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	LCN12	Q6JVE5	192 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	UNQ9165/PRO28630	Q6UXU0	137 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	RBPMS2	Q6ZRY4	209 aa	Known RBP	4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	C9orf47	Q6ZRZ4	202 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	PRNT	Q86SH4	94 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	APRG1	Q8IVJ8	170 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	MAPK1IP1L	Q8NDC0	245 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	OR4X2	Q8NGF9	303 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	HIST1H2BL	Q99880	126 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	GNB4	Q9HAV0	340 aa		4.2	□□□□□ -1.74
ATG4A-208	ENST00000489247	PEF1	Q9UBV8	284 aa	Known RBP	4.2	□□□□□ -1.74

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