RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 SAPCD1Q5SSQ6 148 aa12.02□□□□□ -0.49
SYNE1-227ENST00000489156 IGFL4Q6B9Z1 124 aa12.02□□□□□ -0.49
SYNE1-227ENST00000489156 SOCS3O14543 225 aa12.01□□□□□ -0.49
SYNE1-227ENST00000489156 CBLN1P23435 193 aa12.01□□□□□ -0.49
SYNE1-227ENST00000489156 HLA-DMBP28068 263 aa12.01□□□□□ -0.49
SYNE1-227ENST00000489156 RPL11P62913 178 aaKnown RBP12.01□□□□□ -0.49
SYNE1-227ENST00000489156 DLX4Q92988 240 aaPredicted RBP12.01□□□□□ -0.49
SYNE1-227ENST00000489156 RNASE7Q9H1E1 156 aaKnown RBP12.01□□□□□ -0.49
SYNE1-227ENST00000489156 IL36BQ9NZH7 164 aa12.01□□□□□ -0.49
SYNE1-227ENST00000489156 ZNF492Q9P255 531 aa12.01□□□□□ -0.49
SYNE1-227ENST00000489156 PEMTQ9UBM1 199 aa12.01□□□□□ -0.49
SYNE1-227ENST00000489156 ANK2Q01484 3957 aa12□□□□□ -0.49
SYNE1-227ENST00000489156 TRAV9-1A0A075B6T8 112 aa12□□□□□ -0.49
SYNE1-227ENST00000489156 TGIF2-C20orf24A0A0A6YYL0 155 aa12□□□□□ -0.49
SYNE1-227ENST00000489156 ZNF705FA8MVS1 300 aaPredicted RBP12□□□□□ -0.49
SYNE1-227ENST00000489156 M0QZ24 198 aa12□□□□□ -0.49
SYNE1-227ENST00000489156 CXCL1P09341 107 aa12□□□□□ -0.49
SYNE1-227ENST00000489156 TCF24Q7RTU0 167 aa12□□□□□ -0.49
SYNE1-227ENST00000489156 COX8CQ7Z4L0 72 aa12□□□□□ -0.49
SYNE1-227ENST00000489156 RNF182Q8N6D2 247 aa12□□□□□ -0.49
SYNE1-227ENST00000489156 FAM210BQ96KR6 192 aa12□□□□□ -0.49
SYNE1-227ENST00000489156 IGKV2-40A0A087WW87 121 aaPredicted RBP12□□□□□ -0.49
SYNE1-227ENST00000489156 C2orf70A6NJV1 201 aa12□□□□□ -0.49
SYNE1-227ENST00000489156 IGKV2D-40P01614 121 aaPredicted RBP12□□□□□ -0.49
SYNE1-227ENST00000489156 NUDT10Q8NFP7 164 aa12□□□□□ -0.49
SYNE1-227ENST00000489156 SPATA3Q8NHX4 192 aa12□□□□□ -0.49
SYNE1-227ENST00000489156 NUDT11Q96G61 164 aa12□□□□□ -0.49
SYNE1-227ENST00000489156 NOTCH3Q9UM47 2321 aa11.99□□□□□ -0.49
SYNE1-227ENST00000489156 ZNF705GA8MUZ8 300 aaPredicted RBP11.99□□□□□ -0.49
SYNE1-227ENST00000489156 C19orf71A6NCJ1 209 aa11.98□□□□□ -0.49
SYNE1-227ENST00000489156 PRR27Q6MZM9 219 aa11.98□□□□□ -0.49
SYNE1-227ENST00000489156 OR9G4Q8NGQ1 327 aa11.98□□□□□ -0.49
SYNE1-227ENST00000489156 DAZAP1Q96EP5 407 aaKnown RBP11.98□□□□□ -0.49
SYNE1-227ENST00000489156 PPP1R14DQ9NXH3 145 aa11.98□□□□□ -0.49
SYNE1-227ENST00000489156 A0A1W2PPQ1 181 aa11.97□□□□□ -0.49
SYNE1-227ENST00000489156 GATCO43716 136 aaKnown RBP11.97□□□□□ -0.49
SYNE1-227ENST00000489156 ID1P41134 155 aa11.97□□□□□ -0.49
SYNE1-227ENST00000489156 FAM3BP58499 235 aaPredicted RBP11.97□□□□□ -0.49
SYNE1-227ENST00000489156 LINC00482Q8N8I6 264 aa11.97□□□□□ -0.49
SYNE1-227ENST00000489156 DCANP1Q8TF63 244 aa11.97□□□□□ -0.49
SYNE1-227ENST00000489156 PRR25Q96S07 402 aa11.97□□□□□ -0.49
SYNE1-227ENST00000489156 VGLL1Q99990 258 aa11.97□□□□□ -0.49
SYNE1-227ENST00000489156 CT45A10P0DMU9 189 aa11.97□□□□□ -0.49
SYNE1-227ENST00000489156 EDN2P20800 178 aa11.97□□□□□ -0.49
SYNE1-227ENST00000489156 CT83Q5H943 113 aa11.97□□□□□ -0.49
SYNE1-227ENST00000489156 C9orf47Q6ZRZ4 202 aa11.97□□□□□ -0.49
SYNE1-227ENST00000489156 GBGT1Q8N5D6 347 aa11.97□□□□□ -0.49
SYNE1-227ENST00000489156 NDFIP1Q9BT67 221 aa11.97□□□□□ -0.49
SYNE1-227ENST00000489156 SMIM27A0A1W2PRY6 76 aa11.96□□□□□ -0.49
SYNE1-227ENST00000489156 PRAC2D3DTV9 90 aa11.96□□□□□ -0.49
SYNE1-227ENST00000489156 NPIPB6E9PJ23 425 aa11.96□□□□□ -0.49
SYNE1-227ENST00000489156 OVOL1O14753 267 aa11.96□□□□□ -0.49
SYNE1-227ENST00000489156 P01737 135 aa11.96□□□□□ -0.49
SYNE1-227ENST00000489156 TYMSP04818 313 aa11.96□□□□□ -0.49
SYNE1-227ENST00000489156 RPS10P46783 165 aaKnown RBP11.96□□□□□ -0.49
SYNE1-227ENST00000489156 OR4B1Q8NGF8 309 aa11.96□□□□□ -0.49
SYNE1-227ENST00000489156 ZC2HC1AQ96GY0 325 aa11.96□□□□□ -0.49
SYNE1-227ENST00000489156 PKD1L1Q8TDX9 2849 aa11.96□□□□□ -0.5
SYNE1-227ENST00000489156 RPL19P84098 196 aaKnown RBP11.95□□□□□ -0.5
SYNE1-227ENST00000489156 LINC00322Q6ZN03 302 aaPredicted RBP11.95□□□□□ -0.5
SYNE1-227ENST00000489156 ZNF738Q8NE65 137 aa11.95□□□□□ -0.5
SYNE1-227ENST00000489156 MS4A6AQ9H2W1 248 aa11.95□□□□□ -0.5
SYNE1-227ENST00000489156 SRD5A3Q9H8P0 318 aa11.95□□□□□ -0.5
SYNE1-227ENST00000489156 C1orf196B1AJZ1 125 aa11.95□□□□□ -0.5
SYNE1-227ENST00000489156 TMEM78Q5T7P6 136 aa11.95□□□□□ -0.5
SYNE1-227ENST00000489156 C20orf173Q96LM9 149 aa11.95□□□□□ -0.5
SYNE1-227ENST00000489156 RPP21Q9H633 154 aaKnown RBP11.95□□□□□ -0.5
SYNE1-227ENST00000489156 LENEPQ9Y5L5 61 aa11.95□□□□□ -0.5
SYNE1-227ENST00000489156 A8MWL6 223 aa11.94□□□□□ -0.5
SYNE1-227ENST00000489156 PAFAH1B2P68402 229 aa11.94□□□□□ -0.5
SYNE1-227ENST00000489156 ADAMTSL5Q6ZMM2 481 aa11.94□□□□□ -0.5
SYNE1-227ENST00000489156 TSKUQ8WUA8 353 aa11.94□□□□□ -0.5
SYNE1-227ENST00000489156 LINC00477Q96M19 166 aa11.94□□□□□ -0.5
SYNE1-227ENST00000489156 AGPAT4-IT1Q9H0P7 198 aa11.94□□□□□ -0.5
SYNE1-227ENST00000489156 IGKV3-7A0A075B6H7 116 aa11.93□□□□□ -0.5
SYNE1-227ENST00000489156 FAM231BA6NCW3 169 aa11.93□□□□□ -0.5
SYNE1-227ENST00000489156 ZNF138P52744 262 aa11.93□□□□□ -0.5
SYNE1-227ENST00000489156 RAB5BP61020 215 aa11.93□□□□□ -0.5
SYNE1-227ENST00000489156 C8orf49Q96NF6 230 aa11.93□□□□□ -0.5
SYNE1-227ENST00000489156 PRB4P10163 310 aaPredicted RBP11.93□□□□□ -0.5
SYNE1-227ENST00000489156 CD33P20138 364 aa11.93□□□□□ -0.5
SYNE1-227ENST00000489156 SNRPD3P62318 126 aaKnown RBP11.93□□□□□ -0.5
SYNE1-227ENST00000489156 ERCC8Q13216 396 aa11.93□□□□□ -0.5
SYNE1-227ENST00000489156 SMUG1Q53HV7 270 aa11.93□□□□□ -0.5
SYNE1-227ENST00000489156 FAM162BQ5T6X4 162 aa11.93□□□□□ -0.5
SYNE1-227ENST00000489156 OR10J6PQ8NGY7 276 aa11.93□□□□□ -0.5
SYNE1-227ENST00000489156 Q8TAT8 98 aa11.93□□□□□ -0.5
SYNE1-227ENST00000489156 GFRA4Q9GZZ7 299 aa11.93□□□□□ -0.5
SYNE1-227ENST00000489156 TRAV2A0A0B4J234 112 aa11.92□□□□□ -0.5
SYNE1-227ENST00000489156 K7EQG2 157 aa11.92□□□□□ -0.5
SYNE1-227ENST00000489156 CSN3P07498 182 aa11.92□□□□□ -0.5
SYNE1-227ENST00000489156 CRIP1P50238 77 aa11.92□□□□□ -0.5
SYNE1-227ENST00000489156 SIGLEC8Q9NYZ4 499 aa11.92□□□□□ -0.5
SYNE1-227ENST00000489156 NAT8BQ9UHF3 227 aa11.92□□□□□ -0.5
SYNE1-227ENST00000489156 TRBV7-9A0A0J9YWB2 115 aa11.91□□□□□ -0.5
SYNE1-227ENST00000489156 WFDC9Q8NEX5 89 aa11.91□□□□□ -0.5
SYNE1-227ENST00000489156 SELENOKQ9Y6D0 94 aa11.91□□□□□ -0.5
SYNE1-227ENST00000489156 IZUMO1RA6ND01 250 aa11.91□□□□□ -0.5
SYNE1-227ENST00000489156 CA1P00915 261 aaPredicted RBP11.91□□□□□ -0.5
SYNE1-227ENST00000489156 OR8A1Q8NGG7 326 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms