RNA–Protein interactions for RNA: ENST00000488801.5

PTCD3-217, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-217ENST00000488801 CRISP2P16562 243 aa13.41□□□□□ -0.26
PTCD3-217ENST00000488801 TSPOP30536 169 aa13.41□□□□□ -0.26
PTCD3-217ENST00000488801 EIF5AP63241 154 aaKnown RBP13.41□□□□□ -0.26
PTCD3-217ENST00000488801 ERCC8Q13216 396 aa13.41□□□□□ -0.26
PTCD3-217ENST00000488801 GFI1BQ5VTD9 330 aa13.41□□□□□ -0.26
PTCD3-217ENST00000488801 TMEM256Q8N2U0 113 aa13.41□□□□□ -0.26
PTCD3-217ENST00000488801 C9orf62Q8N4C0 152 aa13.41□□□□□ -0.26
PTCD3-217ENST00000488801 TMEM167BQ9NRX6 74 aa13.41□□□□□ -0.26
PTCD3-217ENST00000488801 PPP1R14DQ9NXH3 145 aa13.41□□□□□ -0.26
PTCD3-217ENST00000488801 TRBV7-9A0A0J9YWB2 115 aa13.4□□□□□ -0.26
PTCD3-217ENST00000488801 UMAD1C9J7I0 102 aa13.4□□□□□ -0.26
PTCD3-217ENST00000488801 TPT1P13693 172 aaKnown RBP13.4□□□□□ -0.26
PTCD3-217ENST00000488801 LEPP41159 167 aa13.4□□□□□ -0.26
PTCD3-217ENST00000488801 FHITP49789 147 aa13.4□□□□□ -0.26
PTCD3-217ENST00000488801 RXFP4Q8TDU9 374 aa13.4□□□□□ -0.26
PTCD3-217ENST00000488801 ZNF492Q9P255 531 aa13.4□□□□□ -0.26
PTCD3-217ENST00000488801 PGPA6NDG6 321 aa13.39□□□□□ -0.27
PTCD3-217ENST00000488801 GGTLC3B5MD39 225 aa13.39□□□□□ -0.27
PTCD3-217ENST00000488801 ZFAND2AQ8N6M9 145 aa13.39□□□□□ -0.27
PTCD3-217ENST00000488801 TMED6Q8WW62 240 aa13.39□□□□□ -0.27
PTCD3-217ENST00000488801 PLECQ15149 4684 aaKnown RBP13.39□□□□□ -0.27
PTCD3-217ENST00000488801 IGHV3OR16-12A0A075B7B8 117 aa13.38□□□□□ -0.27
PTCD3-217ENST00000488801 A0A1W2PRE2 83 aa13.38□□□□□ -0.27
PTCD3-217ENST00000488801 MAP1LC3B2A6NCE7 125 aa13.38□□□□□ -0.27
PTCD3-217ENST00000488801 NMBP08949 121 aa13.38□□□□□ -0.27
PTCD3-217ENST00000488801 CSN1S1P47710 185 aa13.38□□□□□ -0.27
PTCD3-217ENST00000488801 DPPA3Q6W0C5 159 aa13.38□□□□□ -0.27
PTCD3-217ENST00000488801 C5orf17Q8NAS9 161 aa13.38□□□□□ -0.27
PTCD3-217ENST00000488801 MAP1LC3BQ9GZQ8 125 aa13.38□□□□□ -0.27
PTCD3-217ENST00000488801 CELA1Q9UNI1 258 aa13.38□□□□□ -0.27
PTCD3-217ENST00000488801 PLAC8L1A1L4L8 177 aa13.37□□□□□ -0.27
PTCD3-217ENST00000488801 TMEM189A5PLL7 270 aa13.37□□□□□ -0.27
PTCD3-217ENST00000488801 HBE1P02100 147 aa13.37□□□□□ -0.27
PTCD3-217ENST00000488801 FGF8P55075 233 aaPredicted RBP13.37□□□□□ -0.27
PTCD3-217ENST00000488801 FAM74A1Q5RGS3 127 aa13.37□□□□□ -0.27
PTCD3-217ENST00000488801 TMEM78Q5T7P6 136 aa13.37□□□□□ -0.27
PTCD3-217ENST00000488801 PRR9Q5T870 116 aa13.37□□□□□ -0.27
PTCD3-217ENST00000488801 ZFAND6Q6FIF0 208 aa13.37□□□□□ -0.27
PTCD3-217ENST00000488801 MBD3L1Q8WWY6 194 aa13.37□□□□□ -0.27
PTCD3-217ENST00000488801 TMPRSS5Q9H3S3 457 aa13.37□□□□□ -0.27
PTCD3-217ENST00000488801 LENEPQ9Y5L5 61 aa13.37□□□□□ -0.27
PTCD3-217ENST00000488801 ZNF138P52744 262 aa13.36□□□□□ -0.27
PTCD3-217ENST00000488801 GNG5P63218 68 aa13.36□□□□□ -0.27
PTCD3-217ENST00000488801 RRN3P1Q2M238 152 aa13.36□□□□□ -0.27
PTCD3-217ENST00000488801 ZFP69Q49AA0 526 aa13.36□□□□□ -0.27
PTCD3-217ENST00000488801 SLC51BQ86UW2 128 aa13.36□□□□□ -0.27
PTCD3-217ENST00000488801 Q8TAT8 98 aa13.36□□□□□ -0.27
PTCD3-217ENST00000488801 C11orf45Q8TAV5 145 aa13.36□□□□□ -0.27
PTCD3-217ENST00000488801 YTHDF2Q9Y5A9 579 aaKnown RBP13.36□□□□□ -0.27
PTCD3-217ENST00000488801 LOC102723971A0A1B0GUV8 181 aa13.35□□□□□ -0.27
PTCD3-217ENST00000488801 H7BYZ3 331 aa13.35□□□□□ -0.27
PTCD3-217ENST00000488801 TAS2R60P59551 318 aa13.35□□□□□ -0.27
PTCD3-217ENST00000488801 NANOS2P60321 138 aaKnown RBP13.35□□□□□ -0.27
PTCD3-217ENST00000488801 CMTM2Q8TAZ6 248 aa13.35□□□□□ -0.27
PTCD3-217ENST00000488801 TMEM208Q9BTX3 173 aa13.35□□□□□ -0.27
PTCD3-217ENST00000488801 ARL2-SNX15V9GYD0 113 aa13.35□□□□□ -0.27
PTCD3-217ENST00000488801 ALMS1Q8TCU4 4167 aa13.34□□□□□ -0.27
PTCD3-217ENST00000488801 SERTM2A0A1B0GWG4 89 aa13.34□□□□□ -0.27
PTCD3-217ENST00000488801 C7orf71A4D174 169 aa13.34□□□□□ -0.27
PTCD3-217ENST00000488801 FAM74A7A6NL05 159 aa13.34□□□□□ -0.27
PTCD3-217ENST00000488801 ZNF705GA8MUZ8 300 aaPredicted RBP13.34□□□□□ -0.27
PTCD3-217ENST00000488801 ZNF324O75467 553 aaPredicted RBP13.34□□□□□ -0.27
PTCD3-217ENST00000488801 TCRAP04437 139 aa13.34□□□□□ -0.27
PTCD3-217ENST00000488801 PRM2P04554 102 aa13.34□□□□□ -0.27
PTCD3-217ENST00000488801 GOLT1AQ6ZVE7 132 aa13.34□□□□□ -0.27
PTCD3-217ENST00000488801 AZU1P20160 251 aa13.33□□□□□ -0.28
PTCD3-217ENST00000488801 BTN1A1Q13410 526 aa13.33□□□□□ -0.28
PTCD3-217ENST00000488801 FAM213BQ8TBF2 198 aa13.33□□□□□ -0.28
PTCD3-217ENST00000488801 RNASE8Q8TDE3 154 aaKnown RBP13.33□□□□□ -0.28
PTCD3-217ENST00000488801 LINC00467Q9BRT7 94 aa13.33□□□□□ -0.28
PTCD3-217ENST00000488801 DKK2Q9UBU2 259 aa13.33□□□□□ -0.28
PTCD3-217ENST00000488801 TRAV12-3A0A0B4J271 114 aa13.32□□□□□ -0.28
PTCD3-217ENST00000488801 NUPR2A6NF83 97 aa13.32□□□□□ -0.28
PTCD3-217ENST00000488801 IGLV2-11P01706 119 aa13.32□□□□□ -0.28
PTCD3-217ENST00000488801 SULT1A2P50226 295 aa13.32□□□□□ -0.28
PTCD3-217ENST00000488801 RAB5CP51148 216 aa13.32□□□□□ -0.28
PTCD3-217ENST00000488801 SUMO1P63165 101 aaKnown RBP13.32□□□□□ -0.28
PTCD3-217ENST00000488801 PMS2P11Q13670 270 aa13.32□□□□□ -0.28
PTCD3-217ENST00000488801 CCDC28AQ8IWP9 274 aa13.32□□□□□ -0.28
PTCD3-217ENST00000488801 TMEM263Q8WUH6 116 aaKnown RBP13.32□□□□□ -0.28
PTCD3-217ENST00000488801 LINC01587Q99440 93 aa13.32□□□□□ -0.28
PTCD3-217ENST00000488801 EPDR1Q9UM22 224 aa13.32□□□□□ -0.28
PTCD3-217ENST00000488801 RPH3ALQ9UNE2 315 aa13.32□□□□□ -0.28
PTCD3-217ENST00000488801 DNAH1Q9P2D7 4330 aa13.31□□□□□ -0.28
PTCD3-217ENST00000488801 MUC4Q99102 2169 aa13.31□□□□□ -0.28
PTCD3-217ENST00000488801 TRAV8-1A0A0A6YYK1 113 aa13.31□□□□□ -0.28
PTCD3-217ENST00000488801 TEX48A0A1B0GUV7 120 aa13.31□□□□□ -0.28
PTCD3-217ENST00000488801 J3KRW8 73 aa13.31□□□□□ -0.28
PTCD3-217ENST00000488801 C12orf74Q32Q52 190 aa13.31□□□□□ -0.28
PTCD3-217ENST00000488801 Q6AWC8 147 aa13.31□□□□□ -0.28
PTCD3-217ENST00000488801 EIF5AL1Q6IS14 154 aaKnown RBP13.31□□□□□ -0.28
PTCD3-217ENST00000488801 IQCF2Q8IXL9 164 aa13.31□□□□□ -0.28
PTCD3-217ENST00000488801 TVP23CQ96ET8 276 aa13.31□□□□□ -0.28
PTCD3-217ENST00000488801 PYGO2Q9BRQ0 406 aa13.31□□□□□ -0.28
PTCD3-217ENST00000488801 NIPSNAP3BQ9BS92 247 aa13.31□□□□□ -0.28
PTCD3-217ENST00000488801 NKX6-2Q9C056 277 aaPredicted RBP13.31□□□□□ -0.28
PTCD3-217ENST00000488801 SACSQ9NZJ4 4579 aa13.3□□□□□ -0.28
PTCD3-217ENST00000488801 NACAE9PAV3 2078 aa13.3□□□□□ -0.28
PTCD3-217ENST00000488801 TRAV1-1A0A0B4J248 108 aa13.3□□□□□ -0.28
PTCD3-217ENST00000488801 CXorf65A6NEN9 183 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms