RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 TPSG1Q9NRR2 321 aa13.14□□□□□ -0.31
COL7A1-210ENST00000487017 NPSP0C0P6 89 aa13.14□□□□□ -0.31
COL7A1-210ENST00000487017 TMEM141Q96I45 108 aa13.14□□□□□ -0.31
COL7A1-210ENST00000487017 C9orf118A6NHY6 69 aa13.13□□□□□ -0.31
COL7A1-210ENST00000487017 PRR20EP86478 221 aa13.13□□□□□ -0.31
COL7A1-210ENST00000487017 PRR20CP86479 221 aa13.13□□□□□ -0.31
COL7A1-210ENST00000487017 PRR20DP86480 221 aa13.13□□□□□ -0.31
COL7A1-210ENST00000487017 PRR20BP86481 221 aa13.13□□□□□ -0.31
COL7A1-210ENST00000487017 PRR20AP86496 221 aa13.13□□□□□ -0.31
COL7A1-210ENST00000487017 LGALS9BQ3B8N2 356 aa13.13□□□□□ -0.31
COL7A1-210ENST00000487017 LGALS9CQ6DKI2 356 aa13.13□□□□□ -0.31
COL7A1-210ENST00000487017 COX8AP10176 69 aa13.13□□□□□ -0.31
COL7A1-210ENST00000487017 EP300Q09472 2414 aaPredicted RBP13.13□□□□□ -0.31
COL7A1-210ENST00000487017 KNCNA6PVL3 124 aa13.13□□□□□ -0.31
COL7A1-210ENST00000487017 DKK1O94907 266 aa13.13□□□□□ -0.31
COL7A1-210ENST00000487017 OVOL2Q9BRP0 275 aa13.13□□□□□ -0.31
COL7A1-210ENST00000487017 CFHR3Q02985 330 aa13.12□□□□□ -0.31
COL7A1-210ENST00000487017 IGLV3-9A0A075B6K5 115 aa13.12□□□□□ -0.31
COL7A1-210ENST00000487017 CEACAM8P31997 349 aaPredicted RBP13.12□□□□□ -0.31
COL7A1-210ENST00000487017 POU2AF1Q16633 256 aa13.12□□□□□ -0.31
COL7A1-210ENST00000487017 RUSC1-AS1Q66K80 236 aa13.12□□□□□ -0.31
COL7A1-210ENST00000487017 C9JAW5 83 aa13.12□□□□□ -0.31
COL7A1-210ENST00000487017 IGFL3Q6UXB1 125 aa13.12□□□□□ -0.31
COL7A1-210ENST00000487017 K7EN84 100 aa13.12□□□□□ -0.31
COL7A1-210ENST00000487017 SYNJ2BPP57105 145 aa13.12□□□□□ -0.31
COL7A1-210ENST00000487017 PRSS57Q6UWY2 283 aa13.12□□□□□ -0.31
COL7A1-210ENST00000487017 RNF166Q96A37 237 aaPredicted RBP13.12□□□□□ -0.31
COL7A1-210ENST00000487017 ZC2HC1AQ96GY0 325 aa13.12□□□□□ -0.31
COL7A1-210ENST00000487017 MSRB2Q9Y3D2 182 aa13.12□□□□□ -0.31
COL7A1-210ENST00000487017 NEGR1Q7Z3B1 354 aa13.12□□□□□ -0.31
COL7A1-210ENST00000487017 SIGLEC8Q9NYZ4 499 aa13.12□□□□□ -0.31
COL7A1-210ENST00000487017 CNOT1A5YKK6 2376 aaKnown RBP13.11□□□□□ -0.31
COL7A1-210ENST00000487017 RPL32P62910 135 aaKnown RBP13.11□□□□□ -0.31
COL7A1-210ENST00000487017 C8orf86Q6ZUL3 223 aa13.11□□□□□ -0.31
COL7A1-210ENST00000487017 VWC2Q2TAL6 325 aa13.11□□□□□ -0.31
COL7A1-210ENST00000487017 CACNA1GO43497 2377 aa13.11□□□□□ -0.31
COL7A1-210ENST00000487017 YLPM1P49750 1951 aaKnown RBP13.11□□□□□ -0.31
COL7A1-210ENST00000487017 SS18Q15532 418 aa13.1□□□□□ -0.31
COL7A1-210ENST00000487017 G3V318 75 aa13.1□□□□□ -0.31
COL7A1-210ENST00000487017 SLC25A16P16260 332 aa13.1□□□□□ -0.31
COL7A1-210ENST00000487017 LINC01356Q8N9X3 169 aa13.1□□□□□ -0.31
COL7A1-210ENST00000487017 IGLC1P0CG04 106 aa13.1□□□□□ -0.31
COL7A1-210ENST00000487017 PMVKQ15126 192 aa13.1□□□□□ -0.31
COL7A1-210ENST00000487017 PRR30Q53SZ7 412 aaPredicted RBP13.1□□□□□ -0.31
COL7A1-210ENST00000487017 C1QTNF4Q9BXJ3 329 aa13.1□□□□□ -0.31
COL7A1-210ENST00000487017 SLX1AQ9BQ83 275 aa13.1□□□□□ -0.31
COL7A1-210ENST00000487017 DIAPH2-AS1Q14236 149 aa13.1□□□□□ -0.31
COL7A1-210ENST00000487017 DOCK11Q5JSL3 2073 aa13.09□□□□□ -0.31
COL7A1-210ENST00000487017 DEFB131AP59861 70 aa13.09□□□□□ -0.31
COL7A1-210ENST00000487017 K7EM74 188 aa13.09□□□□□ -0.31
COL7A1-210ENST00000487017 IGHV3-16A0A0C4DH30 117 aa13.09□□□□□ -0.31
COL7A1-210ENST00000487017 TRAV26-2A0A0B4J265 109 aa13.09□□□□□ -0.31
COL7A1-210ENST00000487017 LTAP01374 205 aa13.09□□□□□ -0.31
COL7A1-210ENST00000487017 ASPHD1Q5U4P2 390 aa13.09□□□□□ -0.31
COL7A1-210ENST00000487017 NPYP01303 97 aa13.08□□□□□ -0.32
COL7A1-210ENST00000487017 GAGE1Q13065 139 aa13.08□□□□□ -0.32
COL7A1-210ENST00000487017 IGHV2-70DA0A0C4DH43 119 aa13.08□□□□□ -0.32
COL7A1-210ENST00000487017 I3L3M4 83 aa13.08□□□□□ -0.32
COL7A1-210ENST00000487017 MYO7BQ6PIF6 2116 aa13.08□□□□□ -0.32
COL7A1-210ENST00000487017 MAPK1IP1LQ8NDC0 245 aa13.08□□□□□ -0.32
COL7A1-210ENST00000487017 XCL2Q9UBD3 114 aa13.08□□□□□ -0.32
COL7A1-210ENST00000487017 FRMPD3Q5JV73 1810 aa13.07□□□□□ -0.32
COL7A1-210ENST00000487017 TANC1Q9C0D5 1861 aa13.07□□□□□ -0.32
COL7A1-210ENST00000487017 IGHV1-69DA0A0B4J2H0 117 aa13.07□□□□□ -0.32
COL7A1-210ENST00000487017 IGHV1-69P01742 117 aa13.07□□□□□ -0.32
COL7A1-210ENST00000487017 KLF12Q9Y4X4 402 aa13.07□□□□□ -0.32
COL7A1-210ENST00000487017 RHODO00212 210 aa13.07□□□□□ -0.32
COL7A1-210ENST00000487017 GAGE12JA6NER3 117 aa13.07□□□□□ -0.32
COL7A1-210ENST00000487017 K7EP34 96 aa13.07□□□□□ -0.32
COL7A1-210ENST00000487017 GAGE4Q13068 117 aa13.07□□□□□ -0.32
COL7A1-210ENST00000487017 GAGE5Q13069 117 aa13.07□□□□□ -0.32
COL7A1-210ENST00000487017 BVES-AS1Q5T3Y7 98 aa13.07□□□□□ -0.32
COL7A1-210ENST00000487017 TRBV20-1A0A075B6N2 111 aa13.07□□□□□ -0.32
COL7A1-210ENST00000487017 MSMBP08118 114 aa13.07□□□□□ -0.32
COL7A1-210ENST00000487017 SPINK13Q1W4C9 94 aa13.07□□□□□ -0.32
COL7A1-210ENST00000487017 SUMO4Q6EEV6 95 aa13.07□□□□□ -0.32
COL7A1-210ENST00000487017 WIPF2Q8TF74 440 aaPredicted RBP13.07□□□□□ -0.32
COL7A1-210ENST00000487017 NDUFA4O00483 81 aa13.06□□□□□ -0.32
COL7A1-210ENST00000487017 ANXA2RQ3ZCQ2 193 aa13.06□□□□□ -0.32
COL7A1-210ENST00000487017 SDHAF1A6NFY7 115 aa13.06□□□□□ -0.32
COL7A1-210ENST00000487017 OR11H6Q8NGC7 330 aa13.06□□□□□ -0.32
COL7A1-210ENST00000487017 KLK9Q9UKQ9 250 aa13.06□□□□□ -0.32
COL7A1-210ENST00000487017 DOCK8Q8NF50 2099 aa13.06□□□□□ -0.32
COL7A1-210ENST00000487017 C11orf53Q8IXP5 236 aa13.05□□□□□ -0.32
COL7A1-210ENST00000487017 K7ENP7 123 aa13.05□□□□□ -0.32
COL7A1-210ENST00000487017 MRPL35Q9NZE8 188 aaKnown RBP13.05□□□□□ -0.32
COL7A1-210ENST00000487017 GATA3P23771 443 aa13.05□□□□□ -0.32
COL7A1-210ENST00000487017 DNAJC30Q96LL9 226 aa13.05□□□□□ -0.32
COL7A1-210ENST00000487017 FAM215AQ9Y5M1 114 aa13.05□□□□□ -0.32
COL7A1-210ENST00000487017 HLA-DRB4P13762 266 aa13.05□□□□□ -0.32
COL7A1-210ENST00000487017 PFN2P35080 140 aa13.05□□□□□ -0.32
COL7A1-210ENST00000487017 KLF5Q13887 457 aaPredicted RBP13.05□□□□□ -0.32
COL7A1-210ENST00000487017 C3orf56Q8N813 242 aa13.05□□□□□ -0.32
COL7A1-210ENST00000487017 KAAG1Q9UBP8 84 aa13.05□□□□□ -0.32
COL7A1-210ENST00000487017 HLA-DRB4X5D2U9 266 aa13.05□□□□□ -0.32
COL7A1-210ENST00000487017 IGHV1OR15-1A0A075B7D0 117 aa13.05□□□□□ -0.32
COL7A1-210ENST00000487017 Q6ZSR3 168 aa13.05□□□□□ -0.32
COL7A1-210ENST00000487017 F5H768 121 aa13.04□□□□□ -0.32
COL7A1-210ENST00000487017 KRTAP27-1Q3LI81 207 aa13.04□□□□□ -0.32
COL7A1-210ENST00000487017 C8orf31Q8N9H6 132 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms