RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 CELSR1Q9NYQ6 3014 aa12.72□□□□□ -0.37
TMEM53-208ENST00000476724 J3QKU1 62 aa12.71□□□□□ -0.37
TMEM53-208ENST00000476724 DSCR9P59020 149 aa12.71□□□□□ -0.37
TMEM53-208ENST00000476724 CLEC19AQ6UXS0 136 aa12.71□□□□□ -0.37
TMEM53-208ENST00000476724 Q6ZN92 141 aa12.71□□□□□ -0.37
TMEM53-208ENST00000476724 CCDC140Q96MF4 163 aa12.71□□□□□ -0.37
TMEM53-208ENST00000476724 MOB4Q9Y3A3 225 aa12.71□□□□□ -0.37
TMEM53-208ENST00000476724 A0A096LNT2 108 aa12.71□□□□□ -0.38
TMEM53-208ENST00000476724 G3V318 75 aa12.71□□□□□ -0.38
TMEM53-208ENST00000476724 HNRNPA3P51991 378 aaKnown RBP12.71□□□□□ -0.38
TMEM53-208ENST00000476724 PET117Q6UWS5 81 aa12.71□□□□□ -0.38
TMEM53-208ENST00000476724 ATOH7Q8N100 152 aa12.71□□□□□ -0.38
TMEM53-208ENST00000476724 VGLL1Q99990 258 aa12.71□□□□□ -0.38
TMEM53-208ENST00000476724 MAP1LC3CQ9BXW4 147 aa12.71□□□□□ -0.38
TMEM53-208ENST00000476724 AP5S1Q9NUS5 200 aa12.71□□□□□ -0.38
TMEM53-208ENST00000476724 ABCA12Q86UK0 2595 aa12.71□□□□□ -0.38
TMEM53-208ENST00000476724 TRAV40A0A0B4J280 105 aa12.7□□□□□ -0.38
TMEM53-208ENST00000476724 IGHV3-35A0A0C4DH35 117 aa12.7□□□□□ -0.38
TMEM53-208ENST00000476724 MSMBP08118 114 aa12.7□□□□□ -0.38
TMEM53-208ENST00000476724 PRB4P10163 310 aaPredicted RBP12.7□□□□□ -0.38
TMEM53-208ENST00000476724 CRIP2P52943 208 aaPredicted RBP12.7□□□□□ -0.38
TMEM53-208ENST00000476724 FAM104BQ5XKR9 115 aa12.7□□□□□ -0.38
TMEM53-208ENST00000476724 BRD3OSQ6XYD6 125 aa12.7□□□□□ -0.38
TMEM53-208ENST00000476724 TMEM191AQ9H0A3 160 aa12.7□□□□□ -0.38
TMEM53-208ENST00000476724 IGHV1-69DA0A0B4J2H0 117 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 CLPSL1A2RUU4 121 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 OR4C46A6NHA9 309 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 LINC01548A6NM66 108 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 FABP5P3A8MUU1 101 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 IGHV1-69P01742 117 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 ATP5G2Q06055 141 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 MAPK1IP1LQ8NDC0 245 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 PRSS3P2Q8NHM4 247 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 METTL26Q96S19 204 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 MRPS16Q9Y3D3 137 aaKnown RBP12.69□□□□□ -0.38
TMEM53-208ENST00000476724 U3KQK5 164 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 FAM223BA6NKX1 122 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 SLC25A16P16260 332 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 COL5A1-AS1Q5SY13 56 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 FA2HQ7L5A8 372 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 FAM223AQ8IWN6 122 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 FER1L6-AS1Q8NA97 138 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 MEGF9Q9H1U4 602 aa12.69□□□□□ -0.38
TMEM53-208ENST00000476724 IGHV3OR16-8A0A075B7F1 116 aa12.68□□□□□ -0.38
TMEM53-208ENST00000476724 TMSB15BA0A087X1C1 80 aa12.68□□□□□ -0.38
TMEM53-208ENST00000476724 CSN3P07498 182 aa12.68□□□□□ -0.38
TMEM53-208ENST00000476724 IGHV4-38-2P0DP08 117 aa12.68□□□□□ -0.38
TMEM53-208ENST00000476724 IGLL1P15814 213 aa12.68□□□□□ -0.38
TMEM53-208ENST00000476724 HLA-DMBP28068 263 aa12.68□□□□□ -0.38
TMEM53-208ENST00000476724 ZNF138P52744 262 aa12.68□□□□□ -0.38
TMEM53-208ENST00000476724 IGFL4Q6B9Z1 124 aa12.68□□□□□ -0.38
TMEM53-208ENST00000476724 MRPL53Q96EL3 112 aaKnown RBP12.68□□□□□ -0.38
TMEM53-208ENST00000476724 TRAV41A0A0B4J266 112 aa12.68□□□□□ -0.38
TMEM53-208ENST00000476724 IGLC6P0CF74 106 aa12.68□□□□□ -0.38
TMEM53-208ENST00000476724 ZNF80P51504 273 aaPredicted RBP12.68□□□□□ -0.38
TMEM53-208ENST00000476724 MAJINQ3KP22 176 aa12.68□□□□□ -0.38
TMEM53-208ENST00000476724 ORMDL3Q8N138 153 aa12.68□□□□□ -0.38
TMEM53-208ENST00000476724 Q8TAT8 98 aa12.68□□□□□ -0.38
TMEM53-208ENST00000476724 ST20Q9HBF5 79 aa12.68□□□□□ -0.38
TMEM53-208ENST00000476724 HIF1ANQ9NWT6 349 aa12.68□□□□□ -0.38
TMEM53-208ENST00000476724 U3KQE9 123 aa12.68□□□□□ -0.38
TMEM53-208ENST00000476724 AVPP01185 164 aa12.67□□□□□ -0.38
TMEM53-208ENST00000476724 TSPOP30536 169 aa12.67□□□□□ -0.38
TMEM53-208ENST00000476724 DEFB113Q30KQ7 82 aa12.67□□□□□ -0.38
TMEM53-208ENST00000476724 C19orf54Q5BKX5 351 aa12.67□□□□□ -0.38
TMEM53-208ENST00000476724 SPATA12Q7Z6I5 190 aa12.67□□□□□ -0.38
TMEM53-208ENST00000476724 OR10AG1Q8NH19 301 aa12.67□□□□□ -0.38
TMEM53-208ENST00000476724 LAMTOR2Q9Y2Q5 125 aa12.67□□□□□ -0.38
TMEM53-208ENST00000476724 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.67□□□□□ -0.38
TMEM53-208ENST00000476724 TMEM213A2RRL7 107 aa12.66□□□□□ -0.38
TMEM53-208ENST00000476724 B4DSR2 109 aa12.66□□□□□ -0.38
TMEM53-208ENST00000476724 CR1P17927 2039 aa12.66□□□□□ -0.38
TMEM53-208ENST00000476724 D6R8Y8 96 aa12.66□□□□□ -0.38
TMEM53-208ENST00000476724 BATFQ16520 125 aa12.66□□□□□ -0.38
TMEM53-208ENST00000476724 LINC00173Q6ZV60 143 aa12.66□□□□□ -0.38
TMEM53-208ENST00000476724 PIFOQ8TCI5 191 aa12.66□□□□□ -0.38
TMEM53-208ENST00000476724 PRELID3AQ96N28 172 aa12.66□□□□□ -0.38
TMEM53-208ENST00000476724 PSMG3-AS1Q96PY0 264 aa12.66□□□□□ -0.38
TMEM53-208ENST00000476724 CNFNQ9BYD5 112 aa12.66□□□□□ -0.38
TMEM53-208ENST00000476724 LINC01559Q495D7 138 aa12.65□□□□□ -0.38
TMEM53-208ENST00000476724 AMN1Q8IY45 258 aa12.65□□□□□ -0.38
TMEM53-208ENST00000476724 HSBP1L1C9JCN9 74 aa12.65□□□□□ -0.39
TMEM53-208ENST00000476724 RNF223E7ERA6 249 aa12.65□□□□□ -0.39
TMEM53-208ENST00000476724 BRI3O95415 125 aa12.65□□□□□ -0.39
TMEM53-208ENST00000476724 ORM1P02763 201 aa12.65□□□□□ -0.39
TMEM53-208ENST00000476724 TWIST1Q15672 202 aa12.65□□□□□ -0.39
TMEM53-208ENST00000476724 TMEM219Q86XT9 240 aa12.65□□□□□ -0.39
TMEM53-208ENST00000476724 BEX4Q9NWD9 120 aaPredicted RBP12.65□□□□□ -0.39
TMEM53-208ENST00000476724 APCP25054 2843 aa12.64□□□□□ -0.39
TMEM53-208ENST00000476724 ZNF469Q96JG9 3925 aaPredicted RBP12.64□□□□□ -0.39
TMEM53-208ENST00000476724 HIST1H1AQ02539 215 aaPredicted RBP12.64□□□□□ -0.39
TMEM53-208ENST00000476724 ERCC8Q13216 396 aa12.64□□□□□ -0.39
TMEM53-208ENST00000476724 MRPL51Q4U2R6 128 aaKnown RBP12.64□□□□□ -0.39
TMEM53-208ENST00000476724 ZNF747Q9BV97 191 aa12.64□□□□□ -0.39
TMEM53-208ENST00000476724 PRAC2D3DTV9 90 aa12.63□□□□□ -0.39
TMEM53-208ENST00000476724 IGF1P05019 195 aa12.63□□□□□ -0.39
TMEM53-208ENST00000476724 Q5PR19 223 aa12.63□□□□□ -0.39
TMEM53-208ENST00000476724 LINC01545Q5VT33 79 aa12.63□□□□□ -0.39
TMEM53-208ENST00000476724 PPP1R14DQ9NXH3 145 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms