RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 MIR17HGQ75NE6 70 aa11.36□□□□□ -0.59
COL9A3-208ENST00000469802 EXOC3-AS1Q8N2X6 119 aa11.36□□□□□ -0.59
COL9A3-208ENST00000469802 C11orf72Q8NBR9 251 aa11.36□□□□□ -0.59
COL9A3-208ENST00000469802 ZNF503Q96F45 646 aa11.36□□□□□ -0.59
COL9A3-208ENST00000469802 LINC00477Q96M19 166 aa11.36□□□□□ -0.59
COL9A3-208ENST00000469802 LINC00467Q9BRT7 94 aa11.36□□□□□ -0.59
COL9A3-208ENST00000469802 AGPAT4-IT1Q9H0P7 198 aa11.36□□□□□ -0.59
COL9A3-208ENST00000469802 TIMM9Q9Y5J7 89 aa11.36□□□□□ -0.59
COL9A3-208ENST00000469802 NBDYA0A0U1RRE5 68 aa11.35□□□□□ -0.59
COL9A3-208ENST00000469802 INMT-MINDY4F8WBC2 141 aa11.35□□□□□ -0.59
COL9A3-208ENST00000469802 RLN2P04090 185 aa11.35□□□□□ -0.59
COL9A3-208ENST00000469802 MED14OSP0DP75 135 aa11.35□□□□□ -0.59
COL9A3-208ENST00000469802 CRISP2P16562 243 aa11.35□□□□□ -0.59
COL9A3-208ENST00000469802 M6PRP20645 277 aa11.35□□□□□ -0.59
COL9A3-208ENST00000469802 CYCSP99999 105 aaKnown RBP11.35□□□□□ -0.59
COL9A3-208ENST00000469802 CLINT1Q14677 625 aa11.35□□□□□ -0.59
COL9A3-208ENST00000469802 BLNKQ8WV28 456 aa11.35□□□□□ -0.59
COL9A3-208ENST00000469802 MARVELD1Q9BSK0 173 aa11.35□□□□□ -0.59
COL9A3-208ENST00000469802 MRPL32Q9BYC8 188 aaKnown RBP11.35□□□□□ -0.59
COL9A3-208ENST00000469802 WDR61Q9GZS3 305 aaKnown RBP11.35□□□□□ -0.59
COL9A3-208ENST00000469802 KCNIP2Q9NS61 270 aa11.35□□□□□ -0.59
COL9A3-208ENST00000469802 MUC4Q99102 2169 aa11.35□□□□□ -0.59
COL9A3-208ENST00000469802 TRAV26-1A0A087WT03 109 aa11.34□□□□□ -0.59
COL9A3-208ENST00000469802 GAGE12BA1L429 117 aa11.34□□□□□ -0.59
COL9A3-208ENST00000469802 H3BNG1 76 aa11.34□□□□□ -0.59
COL9A3-208ENST00000469802 ZNF324O75467 553 aaPredicted RBP11.34□□□□□ -0.59
COL9A3-208ENST00000469802 GAGE7O76087 117 aa11.34□□□□□ -0.59
COL9A3-208ENST00000469802 GAGE12FP0CL80 117 aa11.34□□□□□ -0.59
COL9A3-208ENST00000469802 GAGE12GP0CL81 117 aa11.34□□□□□ -0.59
COL9A3-208ENST00000469802 GAGE12IP0CL82 117 aa11.34□□□□□ -0.59
COL9A3-208ENST00000469802 CCL18P55774 89 aa11.34□□□□□ -0.59
COL9A3-208ENST00000469802 CD300CQ08708 224 aa11.34□□□□□ -0.59
COL9A3-208ENST00000469802 Q6ZTI0 123 aa11.34□□□□□ -0.59
COL9A3-208ENST00000469802 ZNF680Q8NEM1 530 aa11.34□□□□□ -0.59
COL9A3-208ENST00000469802 RXFP4Q8TDU9 374 aa11.34□□□□□ -0.59
COL9A3-208ENST00000469802 FXYD5Q96DB9 178 aa11.34□□□□□ -0.59
COL9A3-208ENST00000469802 C18orf15Q96N68 181 aa11.34□□□□□ -0.59
COL9A3-208ENST00000469802 AAMDCQ9H7C9 122 aa11.34□□□□□ -0.59
COL9A3-208ENST00000469802 IGKV2-40A0A087WW87 121 aaPredicted RBP11.33□□□□□ -0.6
COL9A3-208ENST00000469802 IGKV2D-40P01614 121 aaPredicted RBP11.33□□□□□ -0.6
COL9A3-208ENST00000469802 NMBP08949 121 aa11.33□□□□□ -0.6
COL9A3-208ENST00000469802 NBEAP1P0C6P0 100 aa11.33□□□□□ -0.6
COL9A3-208ENST00000469802 BTN1A1Q13410 526 aa11.33□□□□□ -0.6
COL9A3-208ENST00000469802 ICAM4Q14773 271 aa11.33□□□□□ -0.6
COL9A3-208ENST00000469802 ANXA2RQ3ZCQ2 193 aa11.33□□□□□ -0.6
COL9A3-208ENST00000469802 SSX7Q7RTT5 188 aa11.33□□□□□ -0.6
COL9A3-208ENST00000469802 ZFAND2AQ8N6M9 145 aa11.33□□□□□ -0.6
COL9A3-208ENST00000469802 PPP1R1CQ8WVI7 109 aa11.33□□□□□ -0.6
COL9A3-208ENST00000469802 GNPNAT1Q96EK6 184 aaPredicted RBP11.33□□□□□ -0.6
COL9A3-208ENST00000469802 TMPRSS5Q9H3S3 457 aa11.33□□□□□ -0.6
COL9A3-208ENST00000469802 OR5I1Q13606 314 aa11.32□□□□□ -0.6
COL9A3-208ENST00000469802 PRR9Q5T870 116 aa11.32□□□□□ -0.6
COL9A3-208ENST00000469802 PHYHIPLQ96FC7 376 aa11.32□□□□□ -0.6
COL9A3-208ENST00000469802 ATP5SQ99766 215 aa11.32□□□□□ -0.6
COL9A3-208ENST00000469802 VGLL1Q99990 258 aa11.32□□□□□ -0.6
COL9A3-208ENST00000469802 OR51M1Q9H341 326 aa11.32□□□□□ -0.6
COL9A3-208ENST00000469802 FUT9Q9Y231 359 aa11.32□□□□□ -0.6
COL9A3-208ENST00000469802 OR10J4P0C629 311 aa11.31□□□□□ -0.6
COL9A3-208ENST00000469802 FAM122CQ6P4D5 195 aa11.31□□□□□ -0.6
COL9A3-208ENST00000469802 C6orf223Q8N319 242 aa11.31□□□□□ -0.6
COL9A3-208ENST00000469802 EIF4E3Q8N5X7 224 aaKnown RBP11.31□□□□□ -0.6
COL9A3-208ENST00000469802 PAXXQ9BUH6 204 aa11.31□□□□□ -0.6
COL9A3-208ENST00000469802 GSN-AS1Q9NRJ2 163 aa11.31□□□□□ -0.6
COL9A3-208ENST00000469802 ZNF492Q9P255 531 aa11.31□□□□□ -0.6
COL9A3-208ENST00000469802 TRBV7-9A0A0J9YWB2 115 aa11.3□□□□□ -0.6
COL9A3-208ENST00000469802 A0A0J9YY99 117 aa11.3□□□□□ -0.6
COL9A3-208ENST00000469802 C17orf112F2Z3M2 114 aa11.3□□□□□ -0.6
COL9A3-208ENST00000469802 MPC2O95563 127 aa11.3□□□□□ -0.6
COL9A3-208ENST00000469802 RNASE4P34096 147 aaKnown RBP11.3□□□□□ -0.6
COL9A3-208ENST00000469802 TCL1AP56279 114 aa11.3□□□□□ -0.6
COL9A3-208ENST00000469802 TNP2Q05952 138 aa11.3□□□□□ -0.6
COL9A3-208ENST00000469802 TMEM78Q5T7P6 136 aa11.3□□□□□ -0.6
COL9A3-208ENST00000469802 UPK3BQ9BT76 320 aa11.3□□□□□ -0.6
COL9A3-208ENST00000469802 HSPB11Q9Y547 144 aa11.3□□□□□ -0.6
COL9A3-208ENST00000469802 RYR1P21817 5038 aa11.3□□□□□ -0.6
COL9A3-208ENST00000469802 SPINK4O60575 86 aa11.29□□□□□ -0.6
COL9A3-208ENST00000469802 GPX1P07203 203 aa11.29□□□□□ -0.6
COL9A3-208ENST00000469802 PET100P0DJ07 73 aa11.29□□□□□ -0.6
COL9A3-208ENST00000469802 IBA57Q5T440 356 aaKnown RBP11.29□□□□□ -0.6
COL9A3-208ENST00000469802 ZNF575Q86XF7 245 aa11.29□□□□□ -0.6
COL9A3-208ENST00000469802 VSIG2Q96IQ7 327 aa11.29□□□□□ -0.6
COL9A3-208ENST00000469802 KRTAP1-5Q9BYS1 174 aa11.29□□□□□ -0.6
COL9A3-208ENST00000469802 OR7C2O60412 319 aa11.28□□□□□ -0.6
COL9A3-208ENST00000469802 ZNF138P52744 262 aa11.28□□□□□ -0.6
COL9A3-208ENST00000469802 ESRGQ1W209 222 aa11.28□□□□□ -0.6
COL9A3-208ENST00000469802 Q6ZQT7 251 aa11.28□□□□□ -0.6
COL9A3-208ENST00000469802 Q8TAT8 98 aa11.28□□□□□ -0.6
COL9A3-208ENST00000469802 Q9H8V8 135 aa11.28□□□□□ -0.6
COL9A3-208ENST00000469802 MRPS16Q9Y3D3 137 aaKnown RBP11.28□□□□□ -0.6
COL9A3-208ENST00000469802 KLF12Q9Y4X4 402 aa11.28□□□□□ -0.6
COL9A3-208ENST00000469802 TRGV2A0A075B6R0 118 aa11.27□□□□□ -0.61
COL9A3-208ENST00000469802 TRGV1A0A0A0MS02 117 aa11.27□□□□□ -0.61
COL9A3-208ENST00000469802 RBAKDNA6NC62 111 aa11.27□□□□□ -0.61
COL9A3-208ENST00000469802 SSNA1O43805 119 aa11.27□□□□□ -0.61
COL9A3-208ENST00000469802 UBE2L3P68036 154 aaKnown RBP11.27□□□□□ -0.61
COL9A3-208ENST00000469802 FFAR4Q5NUL3 377 aa11.27□□□□□ -0.61
COL9A3-208ENST00000469802 LYPD1Q8N2G4 141 aa11.27□□□□□ -0.61
COL9A3-208ENST00000469802 Q9H3A6 140 aa11.27□□□□□ -0.61
COL9A3-208ENST00000469802 MBD2Q9UBB5 411 aa11.27□□□□□ -0.61
COL9A3-208ENST00000469802 TP53TG3Q9ULZ0 132 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms