RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 SUN5Q8TC36 379 aa12.82□□□□□ -0.36
COL7A1-205ENST00000465238 LINC00477Q96M19 166 aa12.82□□□□□ -0.36
COL7A1-205ENST00000465238 PLA2G2EQ9NZK7 142 aa12.82□□□□□ -0.36
COL7A1-205ENST00000465238 GOLT1BQ9Y3E0 138 aa12.82□□□□□ -0.36
COL7A1-205ENST00000465238 FRAS1Q86XX4 4008 aa12.81□□□□□ -0.36
COL7A1-205ENST00000465238 MAP1LC3B2A6NCE7 125 aa12.81□□□□□ -0.36
COL7A1-205ENST00000465238 FGF8P55075 233 aaPredicted RBP12.81□□□□□ -0.36
COL7A1-205ENST00000465238 ERCC8Q13216 396 aa12.81□□□□□ -0.36
COL7A1-205ENST00000465238 DPPA3Q6W0C5 159 aa12.81□□□□□ -0.36
COL7A1-205ENST00000465238 C11orf45Q8TAV5 145 aa12.81□□□□□ -0.36
COL7A1-205ENST00000465238 FAM213BQ8TBF2 198 aa12.81□□□□□ -0.36
COL7A1-205ENST00000465238 IGF2BP2-AS1Q96M15 143 aa12.81□□□□□ -0.36
COL7A1-205ENST00000465238 MAP1LC3BQ9GZQ8 125 aa12.81□□□□□ -0.36
COL7A1-205ENST00000465238 IGHV3OR16-12A0A075B7B8 117 aa12.8□□□□□ -0.36
COL7A1-205ENST00000465238 IGKV2-40A0A087WW87 121 aaPredicted RBP12.8□□□□□ -0.36
COL7A1-205ENST00000465238 ZNF705EA8MWA4 302 aaPredicted RBP12.8□□□□□ -0.36
COL7A1-205ENST00000465238 INSP01308 110 aa12.8□□□□□ -0.36
COL7A1-205ENST00000465238 IGKV2D-40P01614 121 aaPredicted RBP12.8□□□□□ -0.36
COL7A1-205ENST00000465238 CT45A10P0DMU9 189 aa12.8□□□□□ -0.36
COL7A1-205ENST00000465238 CDKN1BP46527 198 aa12.8□□□□□ -0.36
COL7A1-205ENST00000465238 FHITP49789 147 aa12.8□□□□□ -0.36
COL7A1-205ENST00000465238 TMEM78Q5T7P6 136 aa12.8□□□□□ -0.36
COL7A1-205ENST00000465238 LGALS9CQ6DKI2 356 aa12.8□□□□□ -0.36
COL7A1-205ENST00000465238 AGPAT4-IT1Q9H0P7 198 aa12.8□□□□□ -0.36
COL7A1-205ENST00000465238 TMPRSS5Q9H3S3 457 aa12.8□□□□□ -0.36
COL7A1-205ENST00000465238 TRAV12-2A0A075B6T6 113 aa12.79□□□□□ -0.36
COL7A1-205ENST00000465238 MIFP14174 115 aa12.79□□□□□ -0.36
COL7A1-205ENST00000465238 LEPP41159 167 aa12.79□□□□□ -0.36
COL7A1-205ENST00000465238 C9orf47Q6ZRZ4 202 aa12.79□□□□□ -0.36
COL7A1-205ENST00000465238 ODF3Q96PU9 254 aa12.79□□□□□ -0.36
COL7A1-205ENST00000465238 TMEM208Q9BTX3 173 aa12.79□□□□□ -0.36
COL7A1-205ENST00000465238 RPH3ALQ9UNE2 315 aa12.79□□□□□ -0.36
COL7A1-205ENST00000465238 X6R8D5 127 aa12.79□□□□□ -0.36
COL7A1-205ENST00000465238 RBAKDNA6NC62 111 aa12.78□□□□□ -0.36
COL7A1-205ENST00000465238 DIRC3C9JPN6 131 aa12.78□□□□□ -0.36
COL7A1-205ENST00000465238 CRXO43186 299 aaPredicted RBP12.78□□□□□ -0.36
COL7A1-205ENST00000465238 SLC25A5P05141 298 aaKnown RBP12.78□□□□□ -0.36
COL7A1-205ENST00000465238 RAB5CP51148 216 aa12.78□□□□□ -0.36
COL7A1-205ENST00000465238 NKX2-5P52952 324 aaPredicted RBP12.78□□□□□ -0.36
COL7A1-205ENST00000465238 NANOS2P60321 138 aaKnown RBP12.78□□□□□ -0.36
COL7A1-205ENST00000465238 ZNF705AQ6ZN79 300 aaPredicted RBP12.78□□□□□ -0.36
COL7A1-205ENST00000465238 C1orf158Q8N1D5 194 aa12.78□□□□□ -0.36
COL7A1-205ENST00000465238 ARL6IP6Q8N6S5 226 aa12.78□□□□□ -0.36
COL7A1-205ENST00000465238 SFT2D1Q8WV19 159 aa12.78□□□□□ -0.36
COL7A1-205ENST00000465238 MBD3L1Q8WWY6 194 aa12.78□□□□□ -0.36
COL7A1-205ENST00000465238 VGLL1Q99990 258 aa12.78□□□□□ -0.36
COL7A1-205ENST00000465238 A0A1W2PRE2 83 aa12.77□□□□□ -0.37
COL7A1-205ENST00000465238 SMIM9A6NGZ8 99 aa12.77□□□□□ -0.37
COL7A1-205ENST00000465238 H2AFB1P0C5Y9 115 aa12.77□□□□□ -0.37
COL7A1-205ENST00000465238 SUMO1P63165 101 aaKnown RBP12.77□□□□□ -0.37
COL7A1-205ENST00000465238 NEU1Q99519 415 aa12.77□□□□□ -0.37
COL7A1-205ENST00000465238 IGHV4-28A0A0C4DH34 117 aa12.76□□□□□ -0.37
COL7A1-205ENST00000465238 J3KRW8 73 aa12.76□□□□□ -0.37
COL7A1-205ENST00000465238 DEFB4AO15263 64 aa12.76□□□□□ -0.37
COL7A1-205ENST00000465238 ZNF138P52744 262 aa12.76□□□□□ -0.37
COL7A1-205ENST00000465238 UBE2G2P60604 165 aa12.76□□□□□ -0.37
COL7A1-205ENST00000465238 C5orf17Q8NAS9 161 aa12.76□□□□□ -0.37
COL7A1-205ENST00000465238 HBE1P02100 147 aa12.75□□□□□ -0.37
COL7A1-205ENST00000465238 TCTAP57738 103 aa12.75□□□□□ -0.37
COL7A1-205ENST00000465238 GNG5P63218 68 aa12.75□□□□□ -0.37
COL7A1-205ENST00000465238 GOLT1AQ6ZVE7 132 aa12.75□□□□□ -0.37
COL7A1-205ENST00000465238 TMEM256Q8N2U0 113 aa12.75□□□□□ -0.37
COL7A1-205ENST00000465238 Q8NAQ8 132 aa12.75□□□□□ -0.37
COL7A1-205ENST00000465238 C2CD4CQ8TF44 421 aa12.75□□□□□ -0.37
COL7A1-205ENST00000465238 LINC01587Q99440 93 aa12.75□□□□□ -0.37
COL7A1-205ENST00000465238 ZNF492Q9P255 531 aa12.75□□□□□ -0.37
COL7A1-205ENST00000465238 A0A1B0GV50 99 aa12.74□□□□□ -0.37
COL7A1-205ENST00000465238 K7EQM0 130 aa12.74□□□□□ -0.37
COL7A1-205ENST00000465238 IFNA7P01567 189 aa12.74□□□□□ -0.37
COL7A1-205ENST00000465238 SULT1A2P50226 295 aa12.74□□□□□ -0.37
COL7A1-205ENST00000465238 C20orf144Q9BQM9 153 aa12.74□□□□□ -0.37
COL7A1-205ENST00000465238 NKX6-2Q9C056 277 aaPredicted RBP12.74□□□□□ -0.37
COL7A1-205ENST00000465238 EPDR1Q9UM22 224 aa12.74□□□□□ -0.37
COL7A1-205ENST00000465238 YTHDF2Q9Y5A9 579 aaKnown RBP12.74□□□□□ -0.37
COL7A1-205ENST00000465238 DNAH10Q8IVF4 4471 aa12.73□□□□□ -0.37
COL7A1-205ENST00000465238 SERTM2A0A1B0GWG4 89 aa12.73□□□□□ -0.37
COL7A1-205ENST00000465238 FAM74A7A6NL05 159 aa12.73□□□□□ -0.37
COL7A1-205ENST00000465238 GGTLC3B5MD39 225 aa12.73□□□□□ -0.37
COL7A1-205ENST00000465238 TCRAP04437 139 aa12.73□□□□□ -0.37
COL7A1-205ENST00000465238 GPX1P07203 203 aa12.73□□□□□ -0.37
COL7A1-205ENST00000465238 NMBP08949 121 aa12.73□□□□□ -0.37
COL7A1-205ENST00000465238 RBMY1A1P0DJD3 496 aaKnown RBP12.73□□□□□ -0.37
COL7A1-205ENST00000465238 RBMY1CP0DJD4 496 aa12.73□□□□□ -0.37
COL7A1-205ENST00000465238 KIR3DS1Q14943 382 aa12.73□□□□□ -0.37
COL7A1-205ENST00000465238 RBMY1FQ15415 496 aaKnown RBP12.73□□□□□ -0.37
COL7A1-205ENST00000465238 RRN3P1Q2M238 152 aa12.73□□□□□ -0.37
COL7A1-205ENST00000465238 GFI1BQ5VTD9 330 aa12.73□□□□□ -0.37
COL7A1-205ENST00000465238 Q8TAT8 98 aa12.73□□□□□ -0.37
COL7A1-205ENST00000465238 FAM19A4Q96LR4 140 aa12.73□□□□□ -0.37
COL7A1-205ENST00000465238 TRAV12-3A0A0B4J271 114 aa12.72□□□□□ -0.37
COL7A1-205ENST00000465238 TRBV7-9A0A0J9YWB2 115 aa12.72□□□□□ -0.37
COL7A1-205ENST00000465238 C11orf94C9JXX5 98 aa12.72□□□□□ -0.37
COL7A1-205ENST00000465238 TEX46H3BTG2 121 aa12.72□□□□□ -0.37
COL7A1-205ENST00000465238 CRISP2P16562 243 aa12.72□□□□□ -0.37
COL7A1-205ENST00000465238 NIPSNAP3BQ9BS92 247 aa12.72□□□□□ -0.37
COL7A1-205ENST00000465238 BOLA1Q9Y3E2 137 aa12.72□□□□□ -0.37
COL7A1-205ENST00000465238 VPS13DQ5THJ4 4388 aa12.72□□□□□ -0.37
COL7A1-205ENST00000465238 C7orf71A4D174 169 aa12.71□□□□□ -0.37
COL7A1-205ENST00000465238 TMEM189A5PLL7 270 aa12.71□□□□□ -0.37
COL7A1-205ENST00000465238 ZNF705GA8MUZ8 300 aaPredicted RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 115.5 ms