RNA–Protein interactions for RNA: ENST00000461383.1

VCL-203, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 268 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-203ENST00000461383 RPL7P18124 248 aaKnown RBP0.94□□□□□ -2.26
VCL-203ENST00000461383 SRP9P49458 86 aaKnown RBP0.94□□□□□ -2.26
VCL-203ENST00000461383 MAXP61244 160 aa0.94□□□□□ -2.26
VCL-203ENST00000461383 LSM3P62310 102 aaKnown RBP0.94□□□□□ -2.26
VCL-203ENST00000461383 MIR22HGQ0VDD5 57 aa0.94□□□□□ -2.26
VCL-203ENST00000461383 FOXI2Q6ZQN5 318 aa0.94□□□□□ -2.26
VCL-203ENST00000461383 DIRC1Q969H9 104 aa0.94□□□□□ -2.26
VCL-203ENST00000461383 CCDC115Q96NT0 180 aa0.94□□□□□ -2.26
VCL-203ENST00000461383 FRMPD1Q5SYB0 1578 aa0.94□□□□□ -2.26
VCL-203ENST00000461383 KMT2BQ9UMN6 2715 aaPredicted RBP0.94□□□□□ -2.26
VCL-203ENST00000461383 BCL9O00512 1426 aa0.93□□□□□ -2.26
VCL-203ENST00000461383 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.93□□□□□ -2.26
VCL-203ENST00000461383 TRBV27A0A0K0K1C4 114 aa0.93□□□□□ -2.26
VCL-203ENST00000461383 C3orf85A0A1B0GTC6 90 aa0.93□□□□□ -2.26
VCL-203ENST00000461383 SPATA45Q537H7 98 aa0.93□□□□□ -2.26
VCL-203ENST00000461383 CASC2Q6XLA1 102 aa0.93□□□□□ -2.26
VCL-203ENST00000461383 TAC4Q86UU9 113 aa0.93□□□□□ -2.26
VCL-203ENST00000461383 CLEC2BQ92478 149 aa0.93□□□□□ -2.26
VCL-203ENST00000461383 TAF9BQ9HBM6 251 aa0.93□□□□□ -2.26
VCL-203ENST00000461383 NIT2Q9NQR4 276 aa0.93□□□□□ -2.26
VCL-203ENST00000461383 XIRP1Q702N8 1843 aaKnown RBP0.93□□□□□ -2.26
VCL-203ENST00000461383 DLC1Q96QB1 1528 aa0.93□□□□□ -2.26
VCL-203ENST00000461383 RFX7Q2KHR2 1363 aa0.93□□□□□ -2.26
VCL-203ENST00000461383 LOC107984156A0A0G2JMH3 177 aa0.92□□□□□ -2.26
VCL-203ENST00000461383 LOC107986453A0A1B0GWG9 222 aa0.92□□□□□ -2.26
VCL-203ENST00000461383 PRORSD1PA6NEY8 169 aa0.92□□□□□ -2.26
VCL-203ENST00000461383 SAA1P0DJI8 122 aaPredicted RBP0.92□□□□□ -2.26
VCL-203ENST00000461383 NEDD8Q15843 81 aa0.92□□□□□ -2.26
VCL-203ENST00000461383 AKAP14Q86UN6 197 aa0.92□□□□□ -2.26
VCL-203ENST00000461383 ARL17AQ8IVW1 177 aa0.92□□□□□ -2.26
VCL-203ENST00000461383 CCL4L1Q8NHW4 92 aa0.92□□□□□ -2.26
VCL-203ENST00000461383 BRK1Q8WUW1 75 aa0.92□□□□□ -2.26
VCL-203ENST00000461383 AP1S3Q96PC3 154 aa0.92□□□□□ -2.26
VCL-203ENST00000461383 GINS2Q9Y248 185 aa0.92□□□□□ -2.26
VCL-203ENST00000461383 CITO14578 2027 aa0.92□□□□□ -2.26
VCL-203ENST00000461383 ANK1P16157 1881 aa0.92□□□□□ -2.26
VCL-203ENST00000461383 A2MP01023 1474 aa0.92□□□□□ -2.26
VCL-203ENST00000461383 LAMA4Q16363 1823 aa0.92□□□□□ -2.26
VCL-203ENST00000461383 TRPM7Q96QT4 1865 aa0.91□□□□□ -2.26
VCL-203ENST00000461383 TRBV7-6A0A0J9YX20 115 aa0.91□□□□□ -2.26
VCL-203ENST00000461383 LOC107984640A0A0U1RRK4 108 aa0.91□□□□□ -2.26
VCL-203ENST00000461383 M0QZK8 103 aa0.91□□□□□ -2.26
VCL-203ENST00000461383 CRYGSP22914 178 aa0.91□□□□□ -2.26
VCL-203ENST00000461383 GLIPR1L1Q6UWM5 242 aa0.91□□□□□ -2.26
VCL-203ENST00000461383 LINC00299Q6ZSB3 139 aa0.91□□□□□ -2.26
VCL-203ENST00000461383 TMEM229BQ8NBD8 167 aa0.91□□□□□ -2.26
VCL-203ENST00000461383 SPANXA1Q9NS26 97 aa0.91□□□□□ -2.26
VCL-203ENST00000461383 CBLN4Q9NTU7 201 aa0.91□□□□□ -2.26
VCL-203ENST00000461383 FKBP11Q9NYL4 201 aa0.91□□□□□ -2.26
VCL-203ENST00000461383 BOKQ9UMX3 212 aaPredicted RBP0.91□□□□□ -2.26
VCL-203ENST00000461383 ATG2AQ2TAZ0 1938 aa0.9□□□□□ -2.27
VCL-203ENST00000461383 BBIP1A8MTZ0 92 aa0.9□□□□□ -2.27
VCL-203ENST00000461383 J3KT08 172 aa0.9□□□□□ -2.27
VCL-203ENST00000461383 SULT1C4O75897 302 aa0.9□□□□□ -2.27
VCL-203ENST00000461383 IGLV3-1P01715 115 aa0.9□□□□□ -2.27
VCL-203ENST00000461383 IGHV3-33P01772 117 aa0.9□□□□□ -2.27
VCL-203ENST00000461383 RPS3P23396 243 aaKnown RBP eCLIP0.9□□□□□ -2.27
VCL-203ENST00000461383 EFNA4P52798 201 aa0.9□□□□□ -2.27
VCL-203ENST00000461383 ZCCHC23Q6ZST2 131 aa0.9□□□□□ -2.27
VCL-203ENST00000461383 LINC00269Q8N2A0 174 aa0.9□□□□□ -2.27
VCL-203ENST00000461383 MORN4Q8NDC4 146 aa0.9□□□□□ -2.27
VCL-203ENST00000461383 PYDC1Q8WXC3 89 aa0.9□□□□□ -2.27
VCL-203ENST00000461383 CIB3Q96Q77 187 aaPredicted RBP0.9□□□□□ -2.27
VCL-203ENST00000461383 AIF1LQ9BQI0 150 aa0.9□□□□□ -2.27
VCL-203ENST00000461383 CNTRLQ7Z7A1 2325 aa0.9□□□□□ -2.27
VCL-203ENST00000461383 TCOF1Q13428 1488 aaKnown RBP0.9□□□□□ -2.27
VCL-203ENST00000461383 PHRF1Q9P1Y6 1649 aaKnown RBP0.89□□□□□ -2.27
VCL-203ENST00000461383 KIAA1549LQ6ZVL6 1849 aa0.89□□□□□ -2.27
VCL-203ENST00000461383 ANKRD30AQ9BXX3 1397 aa0.89□□□□□ -2.27
VCL-203ENST00000461383 NBEAP1P0C6P0 100 aa0.89□□□□□ -2.27
VCL-203ENST00000461383 ETV6P41212 452 aa0.89□□□□□ -2.27
VCL-203ENST00000461383 FOXA3P55318 350 aaPredicted RBP0.89□□□□□ -2.27
VCL-203ENST00000461383 RPS28P62857 69 aaKnown RBP0.89□□□□□ -2.27
VCL-203ENST00000461383 OCIAD2Q56VL3 154 aa0.89□□□□□ -2.27
VCL-203ENST00000461383 C3orf62Q6ZUJ4 267 aa0.89□□□□□ -2.27
VCL-203ENST00000461383 OR8I2Q8N0Y5 310 aa0.89□□□□□ -2.27
VCL-203ENST00000461383 C5orf17Q8NAS9 161 aa0.89□□□□□ -2.27
VCL-203ENST00000461383 OR5A2Q8NGI9 324 aa0.89□□□□□ -2.27
VCL-203ENST00000461383 OR51A4Q8NGJ6 313 aa0.89□□□□□ -2.27
VCL-203ENST00000461383 OR10AC1Q8NH08 325 aa0.89□□□□□ -2.27
VCL-203ENST00000461383 NABP2Q9BQ15 211 aa0.89□□□□□ -2.27
VCL-203ENST00000461383 SPANXCQ9NY87 97 aa0.89□□□□□ -2.27
VCL-203ENST00000461383 CALML5Q9NZT1 146 aa0.89□□□□□ -2.27
VCL-203ENST00000461383 ERBINQ96RT1 1412 aa0.89□□□□□ -2.27
VCL-203ENST00000461383 EDF1O60869 148 aaKnown RBP0.88□□□□□ -2.27
VCL-203ENST00000461383 DPM2O94777 84 aa0.88□□□□□ -2.27
VCL-203ENST00000461383 CD14P08571 375 aa0.88□□□□□ -2.27
VCL-203ENST00000461383 SLC25A4P12235 298 aa0.88□□□□□ -2.27
VCL-203ENST00000461383 CMPK1P30085 196 aa0.88□□□□□ -2.27
VCL-203ENST00000461383 RPL22P35268 128 aaKnown RBP0.88□□□□□ -2.27
VCL-203ENST00000461383 DNAJB13P59910 316 aa0.88□□□□□ -2.27
VCL-203ENST00000461383 BLCAPP62952 87 aa0.88□□□□□ -2.27
VCL-203ENST00000461383 PSPHP78330 225 aa0.88□□□□□ -2.27
VCL-203ENST00000461383 LINC00575Q6W349 94 aa0.88□□□□□ -2.27
VCL-203ENST00000461383 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.88□□□□□ -2.27
VCL-203ENST00000461383 FAM135BQ49AJ0 1406 aa0.88□□□□□ -2.27
VCL-203ENST00000461383 USP54Q70EL1 1684 aa0.88□□□□□ -2.27
VCL-203ENST00000461383 VIRMAQ69YN4 1812 aaKnown RBP0.87□□□□□ -2.27
VCL-203ENST00000461383 FBN3Q75N90 2809 aa0.87□□□□□ -2.27
VCL-203ENST00000461383 A0A1W2PPM0 123 aa0.87□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms