RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 CMTM2Q8TAZ6 248 aa6.39□□□□□ -1.39
COL28A1-205ENST00000453441 FAM213BQ8TBF2 198 aa6.39□□□□□ -1.39
COL28A1-205ENST00000453441 CDIP1Q9H305 208 aa6.39□□□□□ -1.39
COL28A1-205ENST00000453441 Q9H3A6 140 aa6.39□□□□□ -1.39
COL28A1-205ENST00000453441 PPP1R14DQ9NXH3 145 aa6.39□□□□□ -1.39
COL28A1-205ENST00000453441 TRAV1-1A0A0B4J248 108 aa6.38□□□□□ -1.39
COL28A1-205ENST00000453441 BOLA2-SMG1P6H3BVE0 249 aa6.38□□□□□ -1.39
COL28A1-205ENST00000453441 K7EQM0 130 aa6.38□□□□□ -1.39
COL28A1-205ENST00000453441 HMGB3O15347 200 aaKnown RBP6.38□□□□□ -1.39
COL28A1-205ENST00000453441 NMBP08949 121 aa6.38□□□□□ -1.39
COL28A1-205ENST00000453441 HLA-DMBP28068 263 aa6.38□□□□□ -1.39
COL28A1-205ENST00000453441 FHITP49789 147 aa6.38□□□□□ -1.39
COL28A1-205ENST00000453441 GDF5OSQ5U4N7 250 aa6.38□□□□□ -1.39
COL28A1-205ENST00000453441 IGFL4Q6B9Z1 124 aa6.38□□□□□ -1.39
COL28A1-205ENST00000453441 C9orf47Q6ZRZ4 202 aa6.38□□□□□ -1.39
COL28A1-205ENST00000453441 IQCF2Q8IXL9 164 aa6.38□□□□□ -1.39
COL28A1-205ENST00000453441 EXOC3-AS1Q8N2X6 119 aa6.38□□□□□ -1.39
COL28A1-205ENST00000453441 C5orf17Q8NAS9 161 aa6.38□□□□□ -1.39
COL28A1-205ENST00000453441 RNF183Q96D59 192 aa6.38□□□□□ -1.39
COL28A1-205ENST00000453441 LINC00477Q96M19 166 aa6.38□□□□□ -1.39
COL28A1-205ENST00000453441 RCHY1Q96PM5 261 aa6.38□□□□□ -1.39
COL28A1-205ENST00000453441 ASCL2Q99929 193 aa6.38□□□□□ -1.39
COL28A1-205ENST00000453441 U3KQK5 164 aa6.38□□□□□ -1.39
COL28A1-205ENST00000453441 PGPA6NDG6 321 aa6.37□□□□□ -1.39
COL28A1-205ENST00000453441 F6UB75 175 aa6.37□□□□□ -1.39
COL28A1-205ENST00000453441 M0R3E3 92 aa6.37□□□□□ -1.39
COL28A1-205ENST00000453441 SPRY2O43597 315 aa6.37□□□□□ -1.39
COL28A1-205ENST00000453441 SNRPCP09234 159 aaKnown RBP6.37□□□□□ -1.39
COL28A1-205ENST00000453441 LEPP41159 167 aa6.37□□□□□ -1.39
COL28A1-205ENST00000453441 TMEM78Q5T7P6 136 aa6.37□□□□□ -1.39
COL28A1-205ENST00000453441 AMTNQ6UX39 209 aa6.37□□□□□ -1.39
COL28A1-205ENST00000453441 SSX7Q7RTT5 188 aa6.37□□□□□ -1.39
COL28A1-205ENST00000453441 SFT2D1Q8WV19 159 aa6.37□□□□□ -1.39
COL28A1-205ENST00000453441 C20orf144Q9BQM9 153 aa6.37□□□□□ -1.39
COL28A1-205ENST00000453441 LENEPQ9Y5L5 61 aa6.37□□□□□ -1.39
COL28A1-205ENST00000453441 HUWE1Q7Z6Z7 4374 aaKnown RBP6.36□□□□□ -1.39
COL28A1-205ENST00000453441 SMIM9A6NGZ8 99 aa6.36□□□□□ -1.39
COL28A1-205ENST00000453441 ZNF705FA8MVS1 300 aaPredicted RBP6.36□□□□□ -1.39
COL28A1-205ENST00000453441 DIRC3C9JPN6 131 aa6.36□□□□□ -1.39
COL28A1-205ENST00000453441 F6UZH7 168 aa6.36□□□□□ -1.39
COL28A1-205ENST00000453441 INSP01308 110 aa6.36□□□□□ -1.39
COL28A1-205ENST00000453441 TAGLN2P37802 199 aaKnown RBP6.36□□□□□ -1.39
COL28A1-205ENST00000453441 CDKN1BP46527 198 aa6.36□□□□□ -1.39
COL28A1-205ENST00000453441 NKX2-5P52952 324 aaPredicted RBP6.36□□□□□ -1.39
COL28A1-205ENST00000453441 BLOC1S1P78537 153 aa6.36□□□□□ -1.39
COL28A1-205ENST00000453441 PMS2P11Q13670 270 aa6.36□□□□□ -1.39
COL28A1-205ENST00000453441 DEFB135Q30KP9 77 aa6.36□□□□□ -1.39
COL28A1-205ENST00000453441 TMEM256Q8N2U0 113 aa6.36□□□□□ -1.39
COL28A1-205ENST00000453441 HIST1H2BAQ96A08 127 aa6.36□□□□□ -1.39
COL28A1-205ENST00000453441 IGF2BP2-AS1Q96M15 143 aa6.36□□□□□ -1.39
COL28A1-205ENST00000453441 TXNDC17Q9BRA2 123 aa6.36□□□□□ -1.39
COL28A1-205ENST00000453441 OVOL2Q9BRP0 275 aa6.36□□□□□ -1.39
COL28A1-205ENST00000453441 MANBALQ9NQG1 85 aa6.36□□□□□ -1.39
COL28A1-205ENST00000453441 GOLT1BQ9Y3E0 138 aa6.36□□□□□ -1.39
COL28A1-205ENST00000453441 STAB2Q8WWQ8 2551 aa6.36□□□□□ -1.39
COL28A1-205ENST00000453441 ZNF705EA8MWA4 302 aaPredicted RBP6.35□□□□□ -1.39
COL28A1-205ENST00000453441 PRAC2D3DTV9 90 aa6.35□□□□□ -1.39
COL28A1-205ENST00000453441 EIF3GO75821 320 aaKnown RBP eCLIP6.35□□□□□ -1.39
COL28A1-205ENST00000453441 IFNA1P01562 189 aa6.35□□□□□ -1.39
COL28A1-205ENST00000453441 IGKV3-20P01619 116 aa6.35□□□□□ -1.39
COL28A1-205ENST00000453441 GIG44P09565 113 aaPredicted RBP6.35□□□□□ -1.39
COL28A1-205ENST00000453441 CRISP2P16562 243 aa6.35□□□□□ -1.39
COL28A1-205ENST00000453441 ZNF138P52744 262 aa6.35□□□□□ -1.39
COL28A1-205ENST00000453441 FGF8P55075 233 aaPredicted RBP6.35□□□□□ -1.39
COL28A1-205ENST00000453441 DEFB1P60022 68 aa6.35□□□□□ -1.39
COL28A1-205ENST00000453441 CYB561D1Q8N8Q1 229 aa6.35□□□□□ -1.39
COL28A1-205ENST00000453441 SYT8Q8NBV8 401 aa6.35□□□□□ -1.39
COL28A1-205ENST00000453441 CSNK1G2-AS1Q8NCQ2 148 aa6.35□□□□□ -1.39
COL28A1-205ENST00000453441 NEU1Q99519 415 aa6.35□□□□□ -1.39
COL28A1-205ENST00000453441 ATG101Q9BSB4 218 aa6.35□□□□□ -1.39
COL28A1-205ENST00000453441 TGP01266 2768 aa6.35□□□□□ -1.39
COL28A1-205ENST00000453441 NBEAL2Q6ZNJ1 2754 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 FAM74A7A6NL05 159 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 KRTAP9-7A8MTY7 169 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 GGTLC3B5MD39 225 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 IFNA7P01567 189 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 TCRAP04437 139 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 CT45A10P0DMU9 189 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 MIFP14174 115 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 SUMO1P63165 101 aaKnown RBP6.34□□□□□ -1.39
COL28A1-205ENST00000453441 SPINK13Q1W4C9 94 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 ZNF705AQ6ZN79 300 aaPredicted RBP6.34□□□□□ -1.39
COL28A1-205ENST00000453441 OR11H2Q8NH07 326 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 FAM19A4Q96LR4 140 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 RARRES2Q99969 163 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 NDFIP1Q9BT67 221 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 AGPAT4-IT1Q9H0P7 198 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 SLC35B3Q9H1N7 401 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 ZNF492Q9P255 531 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 XCL2Q9UBD3 114 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 EPDR1Q9UM22 224 aa6.34□□□□□ -1.39
COL28A1-205ENST00000453441 IGKV2-40A0A087WW87 121 aaPredicted RBP6.33□□□□□ -1.4
COL28A1-205ENST00000453441 TMEM189A5PLL7 270 aa6.33□□□□□ -1.4
COL28A1-205ENST00000453441 KLLNB2CW77 178 aa6.33□□□□□ -1.4
COL28A1-205ENST00000453441 IGKV2D-40P01614 121 aaPredicted RBP6.33□□□□□ -1.4
COL28A1-205ENST00000453441 S100A9P06702 114 aaKnown RBP6.33□□□□□ -1.4
COL28A1-205ENST00000453441 ZNF705DP0CH99 300 aaPredicted RBP6.33□□□□□ -1.4
COL28A1-205ENST00000453441 ZNF705BP0CI00 300 aaPredicted RBP6.33□□□□□ -1.4
COL28A1-205ENST00000453441 CST9LP1Q5W188 147 aa6.33□□□□□ -1.4
COL28A1-205ENST00000453441 ALKAL2Q6UX46 152 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms