RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 HMGB3O15347 200 aaKnown RBP6.3□□□□□ -1.4
CCDC39-201ENST00000442201 KLK9Q2XQG4 91 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 BAGE3Q86Y29 109 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 BAGE2Q86Y30 109 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 CITED1Q99966 193 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 KLK9Q9UKQ9 250 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 C19orf54Q5BKX5 351 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 GATAD1Q8WUU5 269 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 RNF183Q96D59 192 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 MRPL18Q9H0U6 180 aaKnown RBP6.3□□□□□ -1.4
CCDC39-201ENST00000442201 S4R3C0 116 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 MYO9AB2RTY4 2548 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 SLC17A3O00476 420 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 ZNF207O43670 478 aaKnown RBP6.3□□□□□ -1.4
CCDC39-201ENST00000442201 SCGB2A1O75556 95 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 AMTP48728 403 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 C15orf32Q32M92 178 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 Q56UQ5 140 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 Q6ZS46 218 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 OR1L4Q8NGR5 311 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 GNB4Q9HAV0 340 aa6.3□□□□□ -1.4
CCDC39-201ENST00000442201 TRAV25A0A0B4J276 109 aa6.29□□□□□ -1.4
CCDC39-201ENST00000442201 COX7A2P2O60397 106 aa6.29□□□□□ -1.4
CCDC39-201ENST00000442201 IGKV1-17P01599 117 aa6.29□□□□□ -1.4
CCDC39-201ENST00000442201 TMEM86BQ8N661 226 aa6.29□□□□□ -1.4
CCDC39-201ENST00000442201 OR2K2Q8NGT1 345 aa6.29□□□□□ -1.4
CCDC39-201ENST00000442201 C18orf32Q8TCD1 76 aa6.29□□□□□ -1.4
CCDC39-201ENST00000442201 PRSS22Q9GZN4 317 aa6.29□□□□□ -1.4
CCDC39-201ENST00000442201 ACANP16112 2415 aa6.29□□□□□ -1.4
CCDC39-201ENST00000442201 CRXO43186 299 aaPredicted RBP6.29□□□□□ -1.4
CCDC39-201ENST00000442201 TIGITQ495A1 244 aa6.29□□□□□ -1.4
CCDC39-201ENST00000442201 C5orf47Q569G3 176 aa6.29□□□□□ -1.4
CCDC39-201ENST00000442201 FA2HQ7L5A8 372 aa6.29□□□□□ -1.4
CCDC39-201ENST00000442201 ZNF580Q9UK33 172 aa6.29□□□□□ -1.4
CCDC39-201ENST00000442201 UFC1Q9Y3C8 167 aa6.29□□□□□ -1.4
CCDC39-201ENST00000442201 ORM2P19652 201 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 CRYBB3P26998 211 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 PPIFP30405 207 aaKnown RBP6.28□□□□□ -1.4
CCDC39-201ENST00000442201 FCGR2BP31994 310 aaPredicted RBP6.28□□□□□ -1.4
CCDC39-201ENST00000442201 C10orf113Q5VZT2 155 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 MRPL32Q9BYC8 188 aaKnown RBP6.28□□□□□ -1.4
CCDC39-201ENST00000442201 TMEM160Q9NX00 188 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 SONP18583 2426 aaKnown RBP6.28□□□□□ -1.4
CCDC39-201ENST00000442201 FBLL1A6NHQ2 334 aaKnown RBP6.28□□□□□ -1.4
CCDC39-201ENST00000442201 FAM223BA6NKX1 122 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 H3BUA1 57 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 J3QR89 54 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 CXorf1O96002 111 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 IGHV3-23P01764 117 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 TRGV3P03979 118 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 TAS2R45P59539 299 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 MIR17HGQ75NE6 70 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 SPATA12Q7Z6I5 190 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 FAM223AQ8IWN6 122 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 SMIM20Q8N5G0 67 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 GRAMD2BQ96HH9 432 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 DUX5Q96PT3 197 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 GNB1LQ9BYB4 327 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 SCRT2Q9NQ03 307 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 TECRQ9NZ01 308 aaKnown RBP6.28□□□□□ -1.4
CCDC39-201ENST00000442201 F8W735 103 aaPredicted RBP6.28□□□□□ -1.4
CCDC39-201ENST00000442201 ARL14EPLP0DKL9 152 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 PSMB3P49720 205 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 ATP5G2Q06055 141 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 SLC25A34Q6PIV7 304 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 ZNF502Q8TBZ5 544 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 EEF1AKMT3Q96AZ1 226 aa6.28□□□□□ -1.4
CCDC39-201ENST00000442201 SPANXB1Q9NS25 103 aaPredicted RBP6.28□□□□□ -1.4
CCDC39-201ENST00000442201 PATE2Q6UY27 113 aa6.27□□□□□ -1.41
CCDC39-201ENST00000442201 ZC2HC1AQ96GY0 325 aa6.27□□□□□ -1.41
CCDC39-201ENST00000442201 SMR3AQ99954 134 aa6.27□□□□□ -1.41
CCDC39-201ENST00000442201 NDFIP1Q9BT67 221 aa6.27□□□□□ -1.41
CCDC39-201ENST00000442201 HSPB8Q9UJY1 196 aa6.27□□□□□ -1.41
CCDC39-201ENST00000442201 A0A087WX48 190 aa6.27□□□□□ -1.41
CCDC39-201ENST00000442201 TRBV7-1A0A0A6YYK4 115 aa6.27□□□□□ -1.41
CCDC39-201ENST00000442201 C8orf88P0DMB2 117 aa6.27□□□□□ -1.41
CCDC39-201ENST00000442201 CBLN1P23435 193 aa6.27□□□□□ -1.41
CCDC39-201ENST00000442201 GPR183P32249 361 aa6.27□□□□□ -1.41
CCDC39-201ENST00000442201 LYZP61626 148 aa6.27□□□□□ -1.41
CCDC39-201ENST00000442201 PQLC2Q6ZP29 291 aa6.27□□□□□ -1.41
CCDC39-201ENST00000442201 ATOH7Q8N100 152 aa6.27□□□□□ -1.41
CCDC39-201ENST00000442201 TSKUQ8WUA8 353 aa6.27□□□□□ -1.41
CCDC39-201ENST00000442201 A6NDN8 102 aa6.26□□□□□ -1.41
CCDC39-201ENST00000442201 C2orf70A6NJV1 201 aa6.26□□□□□ -1.41
CCDC39-201ENST00000442201 LY6G6DO95868 133 aa6.26□□□□□ -1.41
CCDC39-201ENST00000442201 CTSGP08311 255 aa6.26□□□□□ -1.41
CCDC39-201ENST00000442201 LINC00305Q7Z4B0 112 aa6.26□□□□□ -1.41
CCDC39-201ENST00000442201 OR10AG1Q8NH19 301 aa6.26□□□□□ -1.41
CCDC39-201ENST00000442201 BORCS7Q96B45 105 aa6.26□□□□□ -1.41
CCDC39-201ENST00000442201 USMG5Q96IX5 58 aa6.26□□□□□ -1.41
CCDC39-201ENST00000442201 RCHY1Q96PM5 261 aa6.26□□□□□ -1.41
CCDC39-201ENST00000442201 FLNBO75369 2602 aaKnown RBP6.26□□□□□ -1.41
CCDC39-201ENST00000442201 MXRA5Q9NR99 2828 aa6.26□□□□□ -1.41
CCDC39-201ENST00000442201 A0A1W2PPM0 123 aa6.26□□□□□ -1.41
CCDC39-201ENST00000442201 IGLV1-40P01703 118 aa6.26□□□□□ -1.41
CCDC39-201ENST00000442201 MT-ND6P03923 174 aa6.26□□□□□ -1.41
CCDC39-201ENST00000442201 SRD5A1P18405 259 aa6.26□□□□□ -1.41
CCDC39-201ENST00000442201 GCHFRP30047 84 aa6.26□□□□□ -1.41
CCDC39-201ENST00000442201 CFHR3Q02985 330 aa6.26□□□□□ -1.41
CCDC39-201ENST00000442201 C8orf86Q6ZUL3 223 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms