RNA–Protein interactions for RNA: ENST00000433888.5

PTPN4-205, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 954 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-205	ENST00000433888	RPS28	P62857	69 aa	Known RBP	0.94	□□□□□ -2.26
PTPN4-205	ENST00000433888	PSPH	P78330	225 aa		0.94	□□□□□ -2.26
PTPN4-205	ENST00000433888	MRPS36	P82909	103 aa	Known RBP	0.94	□□□□□ -2.26
PTPN4-205	ENST00000433888	NEDD8	Q15843	81 aa		0.94	□□□□□ -2.26
PTPN4-205	ENST00000433888	CCDC153	Q494R4	210 aa		0.94	□□□□□ -2.26
PTPN4-205	ENST00000433888	C2orf82	Q6UX34	121 aa		0.94	□□□□□ -2.26
PTPN4-205	ENST00000433888	UNQ6190/PRO20217	Q6UXQ8	127 aa		0.94	□□□□□ -2.26
PTPN4-205	ENST00000433888	FOXI2	Q6ZQN5	318 aa		0.94	□□□□□ -2.26
PTPN4-205	ENST00000433888	TEN1	Q86WV5	123 aa		0.94	□□□□□ -2.26
PTPN4-205	ENST00000433888	MORN4	Q8NDC4	146 aa		0.94	□□□□□ -2.26
PTPN4-205	ENST00000433888	TSTD1	Q8NFU3	115 aa		0.94	□□□□□ -2.26
PTPN4-205	ENST00000433888	C10orf105	Q8TEF2	133 aa		0.94	□□□□□ -2.26
PTPN4-205	ENST00000433888	PATE1	Q8WXA2	126 aa		0.94	□□□□□ -2.26
PTPN4-205	ENST00000433888	BANF2	Q9H503	90 aa		0.94	□□□□□ -2.26
PTPN4-205	ENST00000433888	ORMDL1	Q9P0S3	153 aa		0.94	□□□□□ -2.26
PTPN4-205	ENST00000433888	SI	P14410	1827 aa		0.94	□□□□□ -2.26
PTPN4-205	ENST00000433888	ALPK3	Q96L96	1907 aa		0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888	DSPP	Q9NZW4	1301 aa		0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888	TRBV6-4	A0A1B0GX49	114 aa		0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888		F8W036	122 aa		0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888		H3BRM9	83 aa		0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888	CDC42EP2	O14613	210 aa		0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888	GEMIN2	O14893	280 aa	Known RBP	0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888	IL9	P15248	144 aa		0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888	ARPC4	P59998	168 aa		0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888	SNRPD3	P62318	126 aa	Known RBP	0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888	HSD17B12	Q53GQ0	312 aa		0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888	TCTE3	Q8IZS6	198 aa		0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888	LINC00269	Q8N2A0	174 aa		0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888	C5orf17	Q8NAS9	161 aa		0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888	PSMF1	Q92530	271 aa		0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888	TNFSF18	Q9UNG2	199 aa		0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888	SOX21	Q9Y651	276 aa	Predicted RBP	0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888	PIK3C2A	O00443	1686 aa		0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888	NCOA6	Q14686	2063 aa	Predicted RBP	0.93	□□□□□ -2.26
PTPN4-205	ENST00000433888	CDK5RAP2	Q96SN8	1893 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	MCM3AP	O60318	1980 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	FHAD1	B1AJZ9	1412 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	PTPRD	P23468	1912 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	TRBV7-6	A0A0J9YX20	115 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888		A0A1B0GX51	115 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	PPY	P01298	95 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	IGKV2D-40	P01614	121 aa	Predicted RBP	0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	TRAC	P01848	142 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	PCBD1	P61457	104 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	SMCO1	Q147U7	214 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	IQCJ	Q1A5X6	159 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	MPV17L	Q2QL34	196 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	SMIM21	Q3B7S5	101 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	KRTAP26-1	Q6PEX3	210 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	OR5AK2	Q8NH90	309 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	CCL4L1	Q8NHW4	92 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	NAT14	Q8WUY8	206 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	COMMD3	Q9UBI1	195 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	POLE	Q07864	2286 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	UNC13C	Q8NB66	2214 aa		0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	TCOF1	Q13428	1488 aa	Known RBP	0.92	□□□□□ -2.26
PTPN4-205	ENST00000433888	TRPM1	Q7Z4N2	1603 aa		0.91	□□□□□ -2.26
PTPN4-205	ENST00000433888		A0A087WSZ3	146 aa		0.91	□□□□□ -2.26
PTPN4-205	ENST00000433888	EDF1	O60869	148 aa	Known RBP	0.91	□□□□□ -2.26
PTPN4-205	ENST00000433888	IL7	P13232	177 aa		0.91	□□□□□ -2.26
PTPN4-205	ENST00000433888	CKS2	P33552	79 aa		0.91	□□□□□ -2.26
PTPN4-205	ENST00000433888	GTF2A1	P52655	376 aa	Predicted RBP	0.91	□□□□□ -2.26
PTPN4-205	ENST00000433888	PSG9	Q00887	426 aa		0.91	□□□□□ -2.26
PTPN4-205	ENST00000433888	CASC2	Q6XLA1	102 aa		0.91	□□□□□ -2.26
PTPN4-205	ENST00000433888	OR5AS1	Q8N127	324 aa		0.91	□□□□□ -2.26
PTPN4-205	ENST00000433888	OR5A2	Q8NGI9	324 aa		0.91	□□□□□ -2.26
PTPN4-205	ENST00000433888	OR10AC1	Q8NH08	325 aa		0.91	□□□□□ -2.26
PTPN4-205	ENST00000433888	OTOS	Q8NHW6	89 aa		0.91	□□□□□ -2.26
PTPN4-205	ENST00000433888	MCEE	Q96PE7	176 aa		0.91	□□□□□ -2.26
PTPN4-205	ENST00000433888	MED9	Q9NWA0	146 aa		0.91	□□□□□ -2.26
PTPN4-205	ENST00000433888	TMEM14C	Q9P0S9	112 aa		0.91	□□□□□ -2.26
PTPN4-205	ENST00000433888	MED23	Q9ULK4	1368 aa		0.91	□□□□□ -2.26
PTPN4-205	ENST00000433888	CECR2	Q9BXF3	1484 aa		0.91	□□□□□ -2.26
PTPN4-205	ENST00000433888	FGD6	Q6ZV73	1430 aa		0.9	□□□□□ -2.26
PTPN4-205	ENST00000433888	ZCCHC11	Q5TAX3	1644 aa	Known RBP	0.9	□□□□□ -2.26
PTPN4-205	ENST00000433888	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	HELZ	P42694	1942 aa	Known RBP	0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	DLG5	Q8TDM6	1919 aa		0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	LOC107986453	A0A1B0GWG9	222 aa		0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	ZNF727	A8MUV8	499 aa		0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	UQCRQ	O14949	82 aa		0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	IGKC	P01834	107 aa		0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	LINC00694	P0DN24	101 aa		0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	COX7C	P15954	63 aa		0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	CLLU1	Q5K131	121 aa		0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	GDF5OS	Q5U4N7	250 aa		0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	CSAG1	Q6PB30	78 aa		0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	C4orf3	Q8WVX3	66 aa		0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	ODF3	Q96PU9	254 aa		0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	C22orf24	Q9Y442	160 aa		0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	NCAPD3	P42695	1498 aa		0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	KDM5C	P41229	1560 aa		0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	ANK1	P16157	1881 aa		0.9	□□□□□ -2.27
PTPN4-205	ENST00000433888	USP54	Q70EL1	1684 aa		0.89	□□□□□ -2.27
PTPN4-205	ENST00000433888	ARAP1	Q96P48	1450 aa		0.89	□□□□□ -2.27
PTPN4-205	ENST00000433888	LOC110117498	A0A087WWA1	95 aa		0.89	□□□□□ -2.27
PTPN4-205	ENST00000433888	IGHV1-24	A0A0C4DH33	117 aa		0.89	□□□□□ -2.27
PTPN4-205	ENST00000433888	FAM236A	A0A1B0GUQ0	79 aa		0.89	□□□□□ -2.27

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