RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 HIST1H2BLQ99880 126 aa1.61□□□□□ -2.15
CLK1-204ENST00000432425 B9D2Q9BPU9 175 aa1.61□□□□□ -2.15
CLK1-204ENST00000432425 LINC00597Q9H2U6 94 aa1.61□□□□□ -2.15
CLK1-204ENST00000432425 BCL2L10Q9HD36 194 aa1.61□□□□□ -2.15
CLK1-204ENST00000432425 SLC39A9Q9NUM3 307 aa1.61□□□□□ -2.15
CLK1-204ENST00000432425 ZNRD1Q9P1U0 126 aa1.61□□□□□ -2.15
CLK1-204ENST00000432425 HHLA3Q9XRX5 114 aa1.61□□□□□ -2.15
CLK1-204ENST00000432425 TPRKBQ9Y3C4 175 aa1.61□□□□□ -2.15
CLK1-204ENST00000432425 TMEM14AQ9Y6G1 99 aa1.61□□□□□ -2.15
CLK1-204ENST00000432425 FYCO1Q9BQS8 1478 aa1.61□□□□□ -2.15
CLK1-204ENST00000432425 NLRP1Q9C000 1473 aa1.61□□□□□ -2.15
CLK1-204ENST00000432425 TRPM7Q96QT4 1865 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 PATJQ8NI35 1801 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 MADDQ8WXG6 1647 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 HFM1A2PYH4 1435 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 RTEL1-TNFRSF6BF6WH68 1400 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 PLXNA3P51805 1871 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 TET3O43151 1660 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 MLH3Q9UHC1 1453 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 IGLV3-12A0A075B6K2 115 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 IGLC7A0M8Q6 106 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 RBAKDNA6NC62 111 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 G3V3Q6 166 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 M0R2P5 195 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 NDUFB6O95139 128 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 HBDP02042 147 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 LINC00032P0C843 101 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 HINT1P49773 126 aaPredicted RBP1.6□□□□□ -2.15
CLK1-204ENST00000432425 TAS2R45P59539 299 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 SPRNQ5BIV9 151 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 RNASE13Q5GAN3 156 aaKnown RBP1.6□□□□□ -2.15
CLK1-204ENST00000432425 FP248Q71RG6 208 aaPredicted RBP1.6□□□□□ -2.15
CLK1-204ENST00000432425 Q8N2B8 174 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 ZNF714Q96N38 554 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 SLC35B3Q9H1N7 401 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 FAM60AQ9NP50 221 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 UQCR10Q9UDW1 63 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 AP4S1Q9Y587 144 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 SERP1Q9Y6X1 66 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 ARHGEF28Q8N1W1 1705 aaKnown RBP1.6□□□□□ -2.15
CLK1-204ENST00000432425 MYO5CQ9NQX4 1742 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 GPATCH8Q9UKJ3 1502 aaKnown RBP1.6□□□□□ -2.15
CLK1-204ENST00000432425 SHROOM3Q8TF72 1996 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 SCN11AQ9UI33 1791 aa1.6□□□□□ -2.15
CLK1-204ENST00000432425 MED1Q15648 1581 aaPredicted RBP1.6□□□□□ -2.15
CLK1-204ENST00000432425 ABCC5O15440 1437 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 CRB1P82279 1406 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 PTPRSQ13332 1948 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 SDK2Q58EX2 2172 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 NWD2Q9ULI1 1742 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 MARF1Q9Y4F3 1742 aaKnown RBP1.59□□□□□ -2.15
CLK1-204ENST00000432425 TOP2AP11388 1531 aaKnown RBP1.59□□□□□ -2.15
CLK1-204ENST00000432425 IGKV3D-11A0A0A0MRZ8 115 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 TRGV5A0A0B4J1U4 118 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 NDUFB2O95178 105 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 SLC25A14O95258 325 aaPredicted RBP1.59□□□□□ -2.15
CLK1-204ENST00000432425 SFT2D2O95562 160 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 CYB5AP00167 134 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 IGLV3-25P01717 112 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 RBP4P02753 201 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 SYCNQ0VAF6 134 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 LUZP6Q538Z0 58 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 C10orf91Q5T1B1 145 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 OR2T2Q6IF00 324 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 BRD3OSQ6XYD6 125 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 NTM-AS1Q6ZSK4 140 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 ARPINQ7Z6K5 226 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 ORMDL3Q8N138 153 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 C10orf111Q8N326 155 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 CIRBP-AS1Q8TBR5 109 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 DIRC1Q969H9 104 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 RAB37Q96AX2 223 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 C20orf78Q9BR46 151 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 SPANXDQ9BXN6 97 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 OSTCQ9NRP0 149 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 PHLDA3Q9Y5J5 127 aa1.59□□□□□ -2.15
CLK1-204ENST00000432425 PLXNA2O75051 1894 aa1.59□□□□□ -2.16
CLK1-204ENST00000432425 SHANK1Q9Y566 2161 aa1.59□□□□□ -2.16
CLK1-204ENST00000432425 KIF1AQ12756 1690 aa1.59□□□□□ -2.16
CLK1-204ENST00000432425 SCN3AQ9NY46 2000 aa1.59□□□□□ -2.16
CLK1-204ENST00000432425 ADGRB3O60242 1522 aa1.58□□□□□ -2.16
CLK1-204ENST00000432425 EPRSP07814 1512 aaKnown RBP1.58□□□□□ -2.16
CLK1-204ENST00000432425 UGGT2Q9NYU1 1516 aa1.58□□□□□ -2.16
CLK1-204ENST00000432425 IGHV1OR15-9A0A0B4J2B8 117 aa1.58□□□□□ -2.16
CLK1-204ENST00000432425 GNGT2O14610 69 aa1.58□□□□□ -2.16
CLK1-204ENST00000432425 SNCGO76070 127 aa1.58□□□□□ -2.16
CLK1-204ENST00000432425 TCL1BO95988 128 aa1.58□□□□□ -2.16
CLK1-204ENST00000432425 IGHV3-11P01762 117 aa1.58□□□□□ -2.16
CLK1-204ENST00000432425 HLA-DQA1P01909 254 aa1.58□□□□□ -2.16
CLK1-204ENST00000432425 GYPBP06028 91 aa1.58□□□□□ -2.16
CLK1-204ENST00000432425 FUSP35637 526 aaKnown RBP eCLIP1.58□□□□□ -2.16
CLK1-204ENST00000432425 TSPEAR-AS2P59090 65 aa1.58□□□□□ -2.16
CLK1-204ENST00000432425 YPEL3P61236 119 aaPredicted RBP1.58□□□□□ -2.16
CLK1-204ENST00000432425 PCBD1P61457 104 aa1.58□□□□□ -2.16
CLK1-204ENST00000432425 NPC2P61916 151 aa1.58□□□□□ -2.16
CLK1-204ENST00000432425 RPL18Q07020 188 aaKnown RBP1.58□□□□□ -2.16
CLK1-204ENST00000432425 TMEM155Q4W5P6 130 aa1.58□□□□□ -2.16
CLK1-204ENST00000432425 PATE2Q6UY27 113 aa1.58□□□□□ -2.16
CLK1-204ENST00000432425 LINC00304Q8N9R0 145 aa1.58□□□□□ -2.16
CLK1-204ENST00000432425 AQP10Q96PS8 301 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms