RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 MORN5Q5VZ52 161 aa12.29□□□□□ -0.44
PTPRF-206ENST00000429895 PRSS57Q6UWY2 283 aa12.29□□□□□ -0.44
PTPRF-206ENST00000429895 H3BMM0 161 aa12.29□□□□□ -0.44
PTPRF-206ENST00000429895 Q8TCH9 128 aa12.29□□□□□ -0.44
PTPRF-206ENST00000429895 UBE2WQ96B02 151 aa12.29□□□□□ -0.44
PTPRF-206ENST00000429895 CYYR1Q96J86 154 aa12.29□□□□□ -0.44
PTPRF-206ENST00000429895 NDUFS5O43920 106 aa12.28□□□□□ -0.44
PTPRF-206ENST00000429895 CRLF1O75462 422 aa12.28□□□□□ -0.44
PTPRF-206ENST00000429895 J3QLI3 93 aa12.28□□□□□ -0.44
PTPRF-206ENST00000429895 SPINK8P0C7L1 97 aa12.28□□□□□ -0.44
PTPRF-206ENST00000429895 HAMPP81172 84 aa12.28□□□□□ -0.44
PTPRF-206ENST00000429895 YLPM1P49750 1951 aaKnown RBP12.28□□□□□ -0.44
PTPRF-206ENST00000429895 Q6ZS49 121 aa12.28□□□□□ -0.44
PTPRF-206ENST00000429895 Q8N8P6 123 aa12.28□□□□□ -0.44
PTPRF-206ENST00000429895 CACNA1DQ01668 2161 aa12.28□□□□□ -0.44
PTPRF-206ENST00000429895 A0A1B0GUS0 222 aa12.28□□□□□ -0.44
PTPRF-206ENST00000429895 Q6ZQT7 251 aa12.28□□□□□ -0.44
PTPRF-206ENST00000429895 NOP10Q9NPE3 64 aaKnown RBP12.27□□□□□ -0.44
PTPRF-206ENST00000429895 LRRK1Q38SD2 2015 aa12.27□□□□□ -0.45
PTPRF-206ENST00000429895 TRAV12-1A0A0B4J245 112 aa12.27□□□□□ -0.45
PTPRF-206ENST00000429895 FAM104BQ5XKR9 115 aa12.27□□□□□ -0.45
PTPRF-206ENST00000429895 DEFB105AQ8NG35 78 aa12.27□□□□□ -0.45
PTPRF-206ENST00000429895 CD5LO43866 347 aa12.27□□□□□ -0.45
PTPRF-206ENST00000429895 MRPL51Q4U2R6 128 aaKnown RBP12.27□□□□□ -0.45
PTPRF-206ENST00000429895 DKK4Q9UBT3 224 aa12.27□□□□□ -0.45
PTPRF-206ENST00000429895 MYO7BQ6PIF6 2116 aa12.27□□□□□ -0.45
PTPRF-206ENST00000429895 FANCMQ8IYD8 2048 aa12.26□□□□□ -0.45
PTPRF-206ENST00000429895 DEFB136Q30KP8 78 aa12.26□□□□□ -0.45
PTPRF-206ENST00000429895 IGFBPL1Q8WX77 278 aa12.26□□□□□ -0.45
PTPRF-206ENST00000429895 WDR86Q86TI4 376 aa12.26□□□□□ -0.45
PTPRF-206ENST00000429895 CEP250Q9BV73 2442 aa12.26□□□□□ -0.45
PTPRF-206ENST00000429895 EP300Q09472 2414 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-206ENST00000429895 IGLV3-9A0A075B6K5 115 aa12.26□□□□□ -0.45
PTPRF-206ENST00000429895 GREB1LQ9C091 1923 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-206ENST00000429895 ZNF503-AS2A6NEH8 195 aa12.26□□□□□ -0.45
PTPRF-206ENST00000429895 ZNF492Q9P255 531 aa12.26□□□□□ -0.45
PTPRF-206ENST00000429895 TP53BP1Q12888 1972 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-206ENST00000429895 H3BRN7 92 aa12.25□□□□□ -0.45
PTPRF-206ENST00000429895 XCL1P47992 114 aa12.25□□□□□ -0.45
PTPRF-206ENST00000429895 POLEQ07864 2286 aa12.25□□□□□ -0.45
PTPRF-206ENST00000429895 IGHV7-4-1A0A0J9YVY3 117 aa12.25□□□□□ -0.45
PTPRF-206ENST00000429895 DEFB112Q30KQ8 113 aa12.25□□□□□ -0.45
PTPRF-206ENST00000429895 TRPM7Q96QT4 1865 aa12.25□□□□□ -0.45
PTPRF-206ENST00000429895 MED12Q93074 2177 aa12.25□□□□□ -0.45
PTPRF-206ENST00000429895 hADV29S1A0JD25 119 aa12.25□□□□□ -0.45
PTPRF-206ENST00000429895 IGHV4-59P01825 116 aa12.24□□□□□ -0.45
PTPRF-206ENST00000429895 PRB1P04280 392 aa12.24□□□□□ -0.45
PTPRF-206ENST00000429895 NDUFA12Q9UI09 145 aa12.24□□□□□ -0.45
PTPRF-206ENST00000429895 NDUFS7O75251 213 aa12.24□□□□□ -0.45
PTPRF-206ENST00000429895 PRR25Q96S07 402 aa12.24□□□□□ -0.45
PTPRF-206ENST00000429895 F6UB75 175 aa12.24□□□□□ -0.45
PTPRF-206ENST00000429895 ZNF134P52741 427 aa12.23□□□□□ -0.45
PTPRF-206ENST00000429895 IGFL3Q6UXB1 125 aa12.23□□□□□ -0.45
PTPRF-206ENST00000429895 DSCR8Q96T75 97 aa12.23□□□□□ -0.45
PTPRF-206ENST00000429895 SMIM2Q9BVW6 85 aa12.23□□□□□ -0.45
PTPRF-206ENST00000429895 TSSC4Q9Y5U2 329 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-206ENST00000429895 COX11Q9Y6N1 276 aa12.23□□□□□ -0.45
PTPRF-206ENST00000429895 IGHV4-4A0A075B6R2 117 aa12.22□□□□□ -0.45
PTPRF-206ENST00000429895 LY6G6EA0A0G2JKS1 128 aa12.22□□□□□ -0.45
PTPRF-206ENST00000429895 U3KQA8 63 aa12.22□□□□□ -0.45
PTPRF-206ENST00000429895 HEATR1Q9H583 2144 aaKnown RBP12.22□□□□□ -0.45
PTPRF-206ENST00000429895 IGHV1-24A0A0C4DH33 117 aa12.22□□□□□ -0.45
PTPRF-206ENST00000429895 RPL18AQ02543 176 aaKnown RBP12.22□□□□□ -0.45
PTPRF-206ENST00000429895 C18orf32Q8TCD1 76 aa12.22□□□□□ -0.45
PTPRF-206ENST00000429895 TINCRA0A1B0GVN0 87 aa12.22□□□□□ -0.45
PTPRF-206ENST00000429895 WISP1O95388 367 aa12.22□□□□□ -0.45
PTPRF-206ENST00000429895 HOXB4P17483 251 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-206ENST00000429895 LMO1P25800 156 aa12.22□□□□□ -0.45
PTPRF-206ENST00000429895 DOPEY2Q9Y3R5 2298 aa12.22□□□□□ -0.45
PTPRF-206ENST00000429895 WT1-ASQ06250 92 aa12.22□□□□□ -0.45
PTPRF-206ENST00000429895 PROK2Q9HC23 129 aa12.22□□□□□ -0.45
PTPRF-206ENST00000429895 CRYGCP07315 174 aa12.22□□□□□ -0.45
PTPRF-206ENST00000429895 GRNP28799 593 aaKnown RBP12.22□□□□□ -0.45
PTPRF-206ENST00000429895 ARFGEF3Q5TH69 2177 aa12.21□□□□□ -0.45
PTPRF-206ENST00000429895 CCL24O00175 119 aa12.21□□□□□ -0.45
PTPRF-206ENST00000429895 DLEU1O43261 78 aa12.21□□□□□ -0.45
PTPRF-206ENST00000429895 APRG1Q8IVJ8 170 aa12.21□□□□□ -0.45
PTPRF-206ENST00000429895 LYL1P12980 280 aa12.21□□□□□ -0.45
PTPRF-206ENST00000429895 LTBP1Q14766 1721 aa12.21□□□□□ -0.45
PTPRF-206ENST00000429895 HLA-DMBP28068 263 aa12.21□□□□□ -0.45
PTPRF-206ENST00000429895 PYY3Q5JQD4 70 aa12.21□□□□□ -0.45
PTPRF-206ENST00000429895 ZNF664Q8N3J9 261 aa12.21□□□□□ -0.45
PTPRF-206ENST00000429895 UBL5Q9BZL1 73 aa12.21□□□□□ -0.46
PTPRF-206ENST00000429895 FGF6P10767 208 aa12.21□□□□□ -0.46
PTPRF-206ENST00000429895 ZC2HC1AQ96GY0 325 aa12.21□□□□□ -0.46
PTPRF-206ENST00000429895 U3KQE9 123 aa12.21□□□□□ -0.46
PTPRF-206ENST00000429895 GBF1Q92538 1859 aa12.21□□□□□ -0.46
PTPRF-206ENST00000429895 PI4KAP42356 2102 aa12.2□□□□□ -0.46
PTPRF-206ENST00000429895 COL6A6A6NMZ7 2263 aa12.2□□□□□ -0.46
PTPRF-206ENST00000429895 GNRH2O43555 120 aa12.2□□□□□ -0.46
PTPRF-206ENST00000429895 ELANEP08246 267 aa12.2□□□□□ -0.46
PTPRF-206ENST00000429895 FAM231BA6NCW3 169 aa12.2□□□□□ -0.46
PTPRF-206ENST00000429895 FAM215AQ9Y5M1 114 aa12.2□□□□□ -0.46
PTPRF-206ENST00000429895 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-206ENST00000429895 IGKV2-29A2NJV5 120 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-206ENST00000429895 SPRY2O43597 315 aa12.19□□□□□ -0.46
PTPRF-206ENST00000429895 FHL1Q13642 323 aa12.19□□□□□ -0.46
PTPRF-206ENST00000429895 UBE2V1Q13404 147 aa12.19□□□□□ -0.46
PTPRF-206ENST00000429895 ARTNQ5T4W7 220 aa12.19□□□□□ -0.46
PTPRF-206ENST00000429895 C9orf153Q5TBE3 101 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms