RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 SDF2Q99470 211 aa2.4□□□□□ -2.03
BRCA1-204ENST00000412061 NABP2Q9BQ15 211 aa2.4□□□□□ -2.03
BRCA1-204ENST00000412061 SLC35B3Q9H1N7 401 aa2.4□□□□□ -2.03
BRCA1-204ENST00000412061 METTL1Q9UBP6 276 aaKnown RBP2.4□□□□□ -2.03
BRCA1-204ENST00000412061 LSM2Q9Y333 95 aaKnown RBP2.4□□□□□ -2.03
BRCA1-204ENST00000412061 COL11A1P12107 1806 aaPredicted RBP2.39□□□□□ -2.03
BRCA1-204ENST00000412061 KIF13AQ9H1H9 1805 aa2.39□□□□□ -2.03
BRCA1-204ENST00000412061 MICAL3Q7RTP6 2002 aa2.39□□□□□ -2.03
BRCA1-204ENST00000412061 MBD5Q9P267 1494 aa2.39□□□□□ -2.03
BRCA1-204ENST00000412061 SCN3AQ9NY46 2000 aa2.39□□□□□ -2.03
BRCA1-204ENST00000412061 IGKV3D-11A0A0A0MRZ8 115 aa2.39□□□□□ -2.03
BRCA1-204ENST00000412061 C9orf170A2RU37 121 aa2.39□□□□□ -2.03
BRCA1-204ENST00000412061 BBIP1A8MTZ0 92 aa2.39□□□□□ -2.03
BRCA1-204ENST00000412061 C5orf67F2Z3F1 127 aa2.39□□□□□ -2.03
BRCA1-204ENST00000412061 APODP05090 189 aa2.39□□□□□ -2.03
BRCA1-204ENST00000412061 MRPS10P82664 201 aaKnown RBP2.39□□□□□ -2.03
BRCA1-204ENST00000412061 CIRBPQ14011 172 aaKnown RBP2.39□□□□□ -2.03
BRCA1-204ENST00000412061 C10orf111Q8N326 155 aa2.39□□□□□ -2.03
BRCA1-204ENST00000412061 TCTEX1D1Q8N7M0 179 aa2.39□□□□□ -2.03
BRCA1-204ENST00000412061 ZNF436-AS1Q8NC38 126 aaPredicted RBP2.39□□□□□ -2.03
BRCA1-204ENST00000412061 CST11Q9H112 138 aa2.39□□□□□ -2.03
BRCA1-204ENST00000412061 CST9LQ9H4G1 147 aa2.39□□□□□ -2.03
BRCA1-204ENST00000412061 CCDC167Q9P0B6 97 aa2.39□□□□□ -2.03
BRCA1-204ENST00000412061 RGS12O14924 1447 aa2.38□□□□□ -2.03
BRCA1-204ENST00000412061 RRBP1Q9P2E9 1410 aaKnown RBP2.38□□□□□ -2.03
BRCA1-204ENST00000412061 LOC100130705A0A1B0GUX0 176 aa2.38□□□□□ -2.03
BRCA1-204ENST00000412061 CDC42EP2O14613 210 aa2.38□□□□□ -2.03
BRCA1-204ENST00000412061 RBP4P02753 201 aa2.38□□□□□ -2.03
BRCA1-204ENST00000412061 CKS2P33552 79 aa2.38□□□□□ -2.03
BRCA1-204ENST00000412061 KRTAP10-8P60410 259 aa2.38□□□□□ -2.03
BRCA1-204ENST00000412061 OR5AS1Q8N127 324 aa2.38□□□□□ -2.03
BRCA1-204ENST00000412061 OTOSQ8NHW6 89 aa2.38□□□□□ -2.03
BRCA1-204ENST00000412061 CIB3Q96Q77 187 aaPredicted RBP2.38□□□□□ -2.03
BRCA1-204ENST00000412061 PDCD10Q9BUL8 212 aa2.38□□□□□ -2.03
BRCA1-204ENST00000412061 CLIP1P30622 1438 aa2.38□□□□□ -2.03
BRCA1-204ENST00000412061 VPS8Q8N3P4 1428 aa2.38□□□□□ -2.03
BRCA1-204ENST00000412061 MGAMO43451 1857 aa2.38□□□□□ -2.03
BRCA1-204ENST00000412061 USP54Q70EL1 1684 aa2.37□□□□□ -2.03
BRCA1-204ENST00000412061 ADAMTS7Q9UKP4 1686 aa2.37□□□□□ -2.03
BRCA1-204ENST00000412061 LTBP2Q14767 1821 aa2.37□□□□□ -2.03
BRCA1-204ENST00000412061 BCL9LQ86UU0 1499 aa2.37□□□□□ -2.03
BRCA1-204ENST00000412061 NAIPQ13075 1403 aa2.37□□□□□ -2.03
BRCA1-204ENST00000412061 PNMA8CA0A1B0GUJ8 204 aa2.37□□□□□ -2.03
BRCA1-204ENST00000412061 ETV6P41212 452 aa2.37□□□□□ -2.03
BRCA1-204ENST00000412061 DSCR4P56555 118 aaPredicted RBP2.37□□□□□ -2.03
BRCA1-204ENST00000412061 TPRXLQ17RH7 258 aa2.37□□□□□ -2.03
BRCA1-204ENST00000412061 CCSMST1Q4G0I0 132 aa2.37□□□□□ -2.03
BRCA1-204ENST00000412061 ARPINQ7Z6K5 226 aa2.37□□□□□ -2.03
BRCA1-204ENST00000412061 C14orf144Q96I85 54 aa2.37□□□□□ -2.03
BRCA1-204ENST00000412061 SCN3BQ9NY72 215 aa2.37□□□□□ -2.03
BRCA1-204ENST00000412061 SHROOM3Q8TF72 1996 aa2.37□□□□□ -2.03
BRCA1-204ENST00000412061 KIAA1549Q9HCM3 1950 aa2.37□□□□□ -2.03
BRCA1-204ENST00000412061 MPDZO75970 2070 aa2.37□□□□□ -2.03
BRCA1-204ENST00000412061 NOTCH2Q04721 2471 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 HELZP42694 1942 aaKnown RBP2.36□□□□□ -2.03
BRCA1-204ENST00000412061 ATG2AQ2TAZ0 1938 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 RP1P56715 2156 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 TRBV20-1A0A075B6N2 111 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 TRAV12-1A0A0B4J245 112 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 LOC107984156A0A0G2JMH3 177 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 SPAARA0A1B0GVQ0 90 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 TCRBV4S1A1TA0A5B7 111 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 C2orf70A6NJV1 201 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 E7EUB6 86 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 CORTO00230 105 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 SMIM6P0DI80 62 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 PYYP10082 97 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 ELOBQ15370 118 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 MEIG1Q5JSS6 88 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 ARL17AQ8IVW1 177 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 CLECL1Q8IZS7 167 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 ATOH7Q8N100 152 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 SFT2D1Q8WV19 159 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 PSMG3Q9BT73 122 aaPredicted RBP2.36□□□□□ -2.03
BRCA1-204ENST00000412061 CCNB3Q8WWL7 1395 aa2.36□□□□□ -2.03
BRCA1-204ENST00000412061 GOLGA3Q08378 1498 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 MRC2Q9UBG0 1479 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 SDK2Q58EX2 2172 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 RTEL1-TNFRSF6BF6WH68 1400 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 TRAV10A0A0B4J240 114 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 C3orf85A0A1B0GTC6 90 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 C20orf202A1L168 122 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 ERC2-IT1O76042 136 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 IGLV3-19P01714 112 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 CD2P06729 351 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 AKAIN1P0CW23 69 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 RNASE2P10153 161 aaKnown RBP2.35□□□□□ -2.03
BRCA1-204ENST00000412061 FGF7P21781 194 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 FAM19A2Q8N3H0 131 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 KCNRGQ8N5I3 272 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 LINC00304Q8N9R0 145 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 PSMF1Q92530 271 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 HEATR5BQ9P2D3 2071 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 COL24A1Q17RW2 1714 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 MYO9BQ13459 2157 aa2.35□□□□□ -2.03
BRCA1-204ENST00000412061 MAPKBP1O60336 1514 aa2.34□□□□□ -2.03
BRCA1-204ENST00000412061 WDR97A6NE52 1622 aa2.34□□□□□ -2.03
BRCA1-204ENST00000412061 COL4A2P08572 1712 aa2.34□□□□□ -2.03
BRCA1-204ENST00000412061 IGHV1-24A0A0C4DH33 117 aa2.34□□□□□ -2.04
BRCA1-204ENST00000412061 YPEL1O60688 119 aa2.34□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms